From c57d4e23242219f7d7eb4efb9b690698945425c3 Mon Sep 17 00:00:00 2001 From: =?UTF-8?q?Ra=C3=BAl=20Cumplido?= Date: Fri, 23 Feb 2024 13:08:25 +0000 Subject: [PATCH] --- .circleci/config.yml | 1 + .github/workflows/cache_vcpkg.yml | 109 -- .github/workflows/crossbow.yml | 187 +++ .github/workflows/nightly_dashboard.yml | 93 -- .../workflows/nightly_packaging_report.yml | 25 - .../workflows/nightly_packaging_submit.yml | 21 - .github/workflows/nightly_release_report.yml | 25 - .github/workflows/nightly_release_submit.yml | 21 - .github/workflows/nightly_tests_report.yml | 25 - .github/workflows/nightly_tests_submit.yml | 21 - .../workflows/performance-release-report.yml | 96 -- .github/workflows/prune_branches.yml | 43 - .github/workflows/prune_previews.yml | 65 - .github/workflows/report.yml | 105 -- .github/workflows/submit.yml | 49 - .github/workflows/token_expiration.yml | 50 - .github/workflows/windows_docker.yml | 79 -- .gitignore | 7 - .travis.yml | 4 +- LICENSE | 201 --- 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performance-release-report/R/functions.R delete mode 100644 performance-release-report/performance-release-report.qmd delete mode 100644 performance-release-report/renv.lock delete mode 100644 performance-release-report/renv/.gitignore delete mode 100644 performance-release-report/renv/activate.R delete mode 100644 performance-release-report/renv/settings.json diff --git a/.circleci/config.yml b/.circleci/config.yml index 60d386e53df..6c155ea9868 100644 --- a/.circleci/config.yml +++ b/.circleci/config.yml @@ -1,3 +1,4 @@ + version: 2 jobs: diff --git a/.github/workflows/cache_vcpkg.yml b/.github/workflows/cache_vcpkg.yml deleted file mode 100644 index 13f544ba1f8..00000000000 --- a/.github/workflows/cache_vcpkg.yml +++ /dev/null @@ -1,109 +0,0 @@ -# Licensed to the Apache Software Foundation (ASF) under one -# or more contributor license agreements. See the NOTICE file -# distributed with this work for additional information -# regarding copyright ownership. The ASF licenses this file -# to you under the Apache License, Version 2.0 (the -# "License"); you may not use this file except in compliance -# with the License. You may obtain a copy of the License at -# -# http://www.apache.org/licenses/LICENSE-2.0 -# -# Unless required by applicable law or agreed to in writing, -# software distributed under the License is distributed on an -# "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY -# KIND, either express or implied. See the License for the -# specific language governing permissions and limitations -# under the License. - -name: Crossbow Cache - -on: - workflow_dispatch: - inputs: - vcpkg-version: - description: 'VCPKG Version to use in building the cache.' - required: true - default: '' - arrow-repo: - description: 'Repository to checkout arrow from.' - required: true - default: 'apache/arrow' - arrow-ref: - description: 'Ref to checkout from arrow-repo.' - required: true - default: 'main' - # perhaps daily one for keeping the cache warm - push: - paths: - - '.github/workflows/cache_vcpkg.yml' - schedule: - - cron: | - 0 12 * * * - -env: - VCPKG_ROOT: ${{ github.workspace }}/vcpkg - VCPKG_OVERLAY_TRIPLETS: ${{ github.workspace }}/arrow/ci/vcpkg - VCPKG_DEFAULT_TRIPLET: amd64-osx-static-release - VCPKG_FEATURE_FLAGS: "manifests" - -jobs: - vcpkg: - name: Cache Vcpkg Packages - runs-on: macos-latest - strategy: - fail-fast: false - matrix: - macos_version: - - "10.9" - - "10.13" - env: - MACOSX_DEPLOYMENT_TARGET: ${{ matrix.macos_version }} - steps: - - name: Checkout Arrow - uses: actions/checkout@v3 - with: - repository: ${{ github.event.inputs.arrow-repo || 'apache/arrow'}} - path: arrow - ref: ${{ github.event.inputs.arrow-ref || 'main'}} - - name: Retrieve VCPKG version from arrow/.env - shell: bash - run: | - if [ -z "${{ github.event.inputs.vcpkg-version }}" ]; then - vcpkg_version=$(cat "arrow/.env" | grep "VCPKG" | cut -d "=" -f2 | tr -d '"') - else - vcpkg_version="${{ github.event.inputs.vcpkg-version }}" - fi - echo "VCPKG_VERSION=$vcpkg_version" >> $GITHUB_ENV - - - name: Install System Dependencies - run: brew install bison coreutils ninja cmake - - - uses: actions/cache@v2 - id: vcpkg-cache - with: - path: vcpkg - key: vcpkg-${{ matrix.macos_version }}-${{ env.VCPKG_VERSION }}-${{ hashFiles('arrow/ci/vcpkg/vcpkg.json', 'arrow/ci/vcpkg/*.patch', 'arrow/ci/vcpkg/*osx*.cmake') }}-1 - - - name: Install Vcpkg - shell: bash - run: | - [ -d "vcpkg" ] || arrow/ci/scripts/install_vcpkg.sh $VCPKG_ROOT $VCPKG_VERSION - - - name: Add Vcpkg to PATH - shell: bash - run: echo ${VCPKG_ROOT} >> $GITHUB_PATH - - # workaround for https://github.com/apache/arrow/pull/11569#issuecomment-979592053 - - name: Install OpenSSL - run: vcpkg install openssl - - - name: Install Packages - run: | - vcpkg install \ - --x-manifest-root=arrow/ci/vcpkg/ \ - --x-install-root=$VCPKG_ROOT/installed \ - --x-no-default-features \ - --x-feature=flight \ - --x-feature=gcs \ - --x-feature=parquet \ - --x-feature=json diff --git a/.github/workflows/crossbow.yml b/.github/workflows/crossbow.yml new file mode 100644 index 00000000000..0108554564d --- /dev/null +++ b/.github/workflows/crossbow.yml @@ -0,0 +1,187 @@ +# Licensed to the Apache Software Foundation (ASF) under one +# or more contributor license agreements. See the NOTICE file +# distributed with this work for additional information +# regarding copyright ownership. The ASF licenses this file +# to you under the Apache License, Version 2.0 (the +# "License"); you may not use this file except in compliance +# with the License. You may obtain a copy of the License at +# +# http://www.apache.org/licenses/LICENSE-2.0 +# +# Unless required by applicable law or agreed to in writing, software +# distributed under the License is distributed on an "AS IS" BASIS, +# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied. +# See the License for the specific language governing permissions and +# limitations under the License. + + +# NOTE: must set "Crossbow" as name to have the badge links working in the +# github comment reports! +name: Crossbow +on: + push: + branches: + - "*-github-*" + + +env: + CC: "clang" + CXX: "clang++" + MACOSX_DEPLOYMENT_TARGET: "10.15" + PYARROW_BUILD_VERBOSE: 1 + PYARROW_VERSION: "15.0.1" + PYTHON_VERSION: "3.12" + PYTHON: "/Library/Frameworks/Python.framework/Versions/3.12/bin/python3.12" + VCPKG_DEFAULT_TRIPLET: amd64-osx-static-release + VCPKG_FEATURE_FLAGS: "manifests" + VCPKG_OVERLAY_TRIPLETS: ${{ github.workspace }}/arrow/ci/vcpkg + VCPKG_ROOT: ${{ github.workspace }}/vcpkg + +jobs: + build: + name: Build wheel for Python 3.12 on macOS + runs-on: macos-latest + env: + VCPKG_BINARY_SOURCES: 'clear;nuget,GitHub,readwrite' + steps: + - name: Checkout Arrow + uses: actions/checkout@v4 + with: + fetch-depth: 1 + path: arrow + repository: apache/arrow + ref: 5ce6ff434c1e7daaa2d7f134349f3ce4c22683da + submodules: recursive + + + - name: Install System Dependencies + run: brew install bash bison coreutils ninja + + - name: Install Specific CMake version + uses: lukka/get-cmake@v3.21.2 + + - name: Retrieve VCPKG version from arrow/.env + shell: bash + run: | + vcpkg_version=$(cat "arrow/.env" | grep "VCPKG" | cut -d "=" -f2 | tr -d '"') + echo "VCPKG_VERSION=$vcpkg_version" >> $GITHUB_ENV + + - name: Install Vcpkg + shell: bash + env: + MACOSX_DEPLOYMENT_TARGET: "10.15" + run: arrow/ci/scripts/install_vcpkg.sh $VCPKG_ROOT $VCPKG_VERSION + + - name: Add Vcpkg to PATH + shell: bash + run: echo ${VCPKG_ROOT} >> $GITHUB_PATH + + - name: Setup NuGet Credentials + shell: bash + env: + GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} + run: | + mono `vcpkg fetch nuget | tail -n 1` \ + sources add \ + -source "https://nuget.pkg.github.com/$GITHUB_REPOSITORY_OWNER/index.json" \ + -storepasswordincleartext \ + -name "GitHub" \ + -username "$GITHUB_REPOSITORY_OWNER" \ + -password "$GITHUB_TOKEN" \ + + mono `vcpkg fetch nuget | tail -n 1` \ + setapikey "$GITHUB_TOKEN" \ + -source "https://nuget.pkg.github.com/$GITHUB_REPOSITORY_OWNER/index.json" + + - name: Install Packages + run: | + vcpkg install \ + --clean-after-build \ + --x-install-root=${VCPKG_ROOT}/installed \ + --x-manifest-root=arrow/ci/vcpkg \ + --x-feature=flight \ + --x-feature=gcs \ + --x-feature=json \ + --x-feature=parquet \ + --x-feature=s3 + + - name: Install Python 3.12 + shell: bash + run: sudo arrow/ci/scripts/install_python.sh macos 3.12 + + - name: Build Wheel + shell: bash + run: | + $PYTHON -m venv build-env + source build-env/bin/activate + pip install --upgrade pip wheel + PYTHON=python arrow/ci/scripts/python_wheel_macos_build.sh x86_64 $(pwd)/arrow $(pwd)/build + + - uses: actions/upload-artifact@v3 + with: + name: wheel + path: arrow/python/repaired_wheels/*.whl + + - name: Test Wheel on AMD64 + shell: bash + env: + PYTEST_ADDOPTS: "-k 'not test_cancellation'" + run: | + $PYTHON -m venv test-amd64-env + source test-amd64-env/bin/activate + pip install --upgrade pip wheel + arch -x86_64 pip install -r arrow/python/requirements-wheel-test.txt + PYTHON=python arch -x86_64 arrow/ci/scripts/install_gcs_testbench.sh default + arch -x86_64 arrow/ci/scripts/python_wheel_unix_test.sh $(pwd)/arrow + + - name: Set up Python by actions/setup-python + if: runner.arch == 'X64' + uses: actions/setup-python@v4 + with: + python-version: 3.8 + - name: Set up Python by apt + if: runner.os == 'Linux' && runner.arch != 'X64' + run: | + sudo apt update + sudo apt install -y \ + libgit2-dev \ + libpython3-dev \ + python3-pip + sudo python3 -m pip install --upgrade pip + - name: Checkout Crossbow + uses: actions/checkout@v4 + with: + path: crossbow + ref: release-15.0.1-rc0-0 + - name: Setup Crossbow + shell: bash + run: | + python3 -m pip install -e arrow/dev/archery[crossbow] + echo "$HOME/.local/bin" >> $GITHUB_PATH + - name: Upload artifacts + shell: bash + run: | + archery crossbow \ + --queue-path $(pwd)/crossbow \ + --queue-remote https://github.com/ursacomputing/crossbow.git \ + upload-artifacts \ + --sha release-15.0.1-rc0-0-github-wheel-macos-catalina-cp312-amd64 \ + --tag release-15.0.1-rc0-0-github-wheel-macos-catalina-cp312-amd64 \ + "arrow/python/repaired_wheels/*.whl" + env: + CROSSBOW_GITHUB_TOKEN: ${{ secrets.CROSSBOW_GITHUB_TOKEN || secrets.GITHUB_TOKEN }} + - name: Verify uploaded artifacts + shell: bash + run: | + archery crossbow \ + --queue-path $(pwd)/crossbow \ + --queue-remote https://github.com/ursacomputing/crossbow.git \ + status \ + --task-filter 'wheel-macos-catalina-cp312-amd64' \ + --no-fetch \ + --validate \ + release-15.0.1-rc0-0 + env: + CROSSBOW_GITHUB_TOKEN: ${{ secrets.CROSSBOW_GITHUB_TOKEN || secrets.GITHUB_TOKEN }} + + \ No newline at end of file diff --git a/.github/workflows/nightly_dashboard.yml b/.github/workflows/nightly_dashboard.yml deleted file mode 100644 index dbb4bfd0994..00000000000 --- a/.github/workflows/nightly_dashboard.yml +++ /dev/null @@ -1,93 +0,0 @@ -name: Generate Nightly Dashboard - -concurrency: - group: ${{ github.workflow }} - cancel-in-progress: true - -on: - workflow_dispatch: - pull_request: - paths: - - "csv_reports/*.csv" - - ".github/workflows/nightly_dashboard.yml" - - "crossbow-nightly-report/crossbow-nightly-report.qmd" - push: - branches: main - paths: - - "csv_reports/*.csv" - - ".github/workflows/nightly_dashboard.yml" - - "crossbow-nightly-report/crossbow-nightly-report.qmd" - -jobs: - build: - runs-on: ubuntu-20.04 - steps: - - - uses: actions/checkout@v3 - with: - repository: apache/arrow - path: arrow - - - uses: actions/checkout@v3 - with: - path: crossbow - - - name: Set up Python - uses: actions/setup-python@v4 - with: - cache: pip - python-version: 3.11 - - - name: Generate List of Crossbow Tasks - run: | - python -m pip install -e arrow/dev/archery[crossbow] - archery crossbow check-config > crossbow/all.yml - - - name: Setup Quarto - uses: quarto-dev/quarto-actions/setup@v2 - with: - version: '1.3.450' - - - uses: r-lib/actions/setup-r@v2 - with: - r-version: '4.3.1' - use-public-rspm: true - - # Needed due to https://github.com/r-lib/actions/issues/618 - - name: Link renv.lock - run: ln -sf 'crossbow/crossbow-nightly-report/renv.lock' - - - name: Setup renv - uses: r-lib/actions/setup-renv@v2 - env: - # This is set by setup-r - RENV_CONFIG_REPOS_OVERRIDE: "" - with: - cache-version: 1 - - name: Build Report - uses: quarto-dev/quarto-actions/render@v2 - env: - CROSSBOW_LOOKBACK_WINDOW: 120 - with: - to: html - path: 'crossbow/crossbow-nightly-report/crossbow-nightly-report.qmd' - - - name: Upload Rendered Dashboard - if: github.event_name == 'pull_request' - uses: actions/upload-artifact@v3 - with: - name: dashboard - path: | - crossbow/crossbow-nightly-report/crossbow-nightly-report.html - crossbow/all.yml - - name: Upload result - if: github.event_name == 'push' - working-directory: crossbow - shell: bash - env: - AWS_ACCESS_KEY_ID: ${{ secrets.CROSSBOW_DOCS_AWS_ACCESS_KEY_ID }} - AWS_SECRET_ACCESS_KEY: ${{ secrets.CROSSBOW_DOCS_AWS_SECRET_ACCESS_KEY }} - AWS_DEFAULT_REGION: ${{ secrets.CROSSBOW_DOCS_S3_BUCKET_REGION }} - BUCKET: ${{ secrets.CROSSBOW_DOCS_S3_BUCKET }} - run: | - aws s3 cp crossbow-nightly-report/crossbow-nightly-report.html $BUCKET/index.html diff --git a/.github/workflows/nightly_packaging_report.yml b/.github/workflows/nightly_packaging_report.yml deleted file mode 100644 index 57e4393d858..00000000000 --- a/.github/workflows/nightly_packaging_report.yml +++ /dev/null @@ -1,25 +0,0 @@ -name: Report packaging - -on: - workflow_dispatch: - inputs: - date: - description: 'ISO date string to use in the action. Format YYYY-MM-DD' - required: false - default: '' - - schedule: - - cron: '33 14 * * *' - -jobs: - nightly_packaging_report: - uses: ursacomputing/crossbow/.github/workflows/report.yml@main - with: - report_type: packaging - date: '${{ inputs.date }}' - secrets: - CROSSBOW_GITHUB_TOKEN: ${{ secrets.CROSSBOW_GITHUB_TOKEN }} - CROSSBOW_SMTP_USER: ${{ secrets.CROSSBOW_SMTP_USER }} - CROSSBOW_SMTP_PASSWORD: ${{ secrets.CROSSBOW_SMTP_PASSWORD }} - CROSSBOW_ZULIP_WEBHOOK: ${{ secrets.CROSSBOW_ZULIP_WEBHOOK }} - CROSSBOW_SLACK_WEBHOOK: ${{ secrets.CROSSBOW_SLACK_WEBHOOK }} diff --git a/.github/workflows/nightly_packaging_submit.yml b/.github/workflows/nightly_packaging_submit.yml deleted file mode 100644 index 169750b3c5e..00000000000 --- a/.github/workflows/nightly_packaging_submit.yml +++ /dev/null @@ -1,21 +0,0 @@ -name: Submit packaging - -on: - workflow_dispatch: - inputs: - date: - description: 'ISO date string to use in the action. Format YYYY-MM-DD' - required: false - default: '' - - schedule: - - cron: '27 8 * * *' - -jobs: - nightly_packaging_submit: - uses: ursacomputing/crossbow/.github/workflows/submit.yml@main - with: - report_type: packaging - date: '${{ inputs.date }}' - secrets: - CROSSBOW_GITHUB_TOKEN: ${{ secrets.CROSSBOW_GITHUB_TOKEN }} diff --git a/.github/workflows/nightly_release_report.yml b/.github/workflows/nightly_release_report.yml deleted file mode 100644 index 5942340b94b..00000000000 --- a/.github/workflows/nightly_release_report.yml +++ /dev/null @@ -1,25 +0,0 @@ -name: Report release - -on: - workflow_dispatch: - inputs: - date: - description: 'ISO date string to use in the action. Format YYYY-MM-DD' - required: false - default: '' - - schedule: - - cron: '49 18 * * *' - -jobs: - nightly_release_report: - uses: ursacomputing/crossbow/.github/workflows/report.yml@main - with: - report_type: release - date: '${{ inputs.date }}' - secrets: - CROSSBOW_GITHUB_TOKEN: ${{ secrets.CROSSBOW_GITHUB_TOKEN }} - CROSSBOW_SMTP_USER: ${{ secrets.CROSSBOW_SMTP_USER }} - CROSSBOW_SMTP_PASSWORD: ${{ secrets.CROSSBOW_SMTP_PASSWORD }} - CROSSBOW_ZULIP_WEBHOOK: ${{ secrets.CROSSBOW_ZULIP_WEBHOOK }} - CROSSBOW_SLACK_WEBHOOK: ${{ secrets.CROSSBOW_SLACK_WEBHOOK }} diff --git a/.github/workflows/nightly_release_submit.yml b/.github/workflows/nightly_release_submit.yml deleted file mode 100644 index c9dff1f5fab..00000000000 --- a/.github/workflows/nightly_release_submit.yml +++ /dev/null @@ -1,21 +0,0 @@ -name: Submit release - -on: - workflow_dispatch: - inputs: - date: - description: 'ISO date string to use in the action. Format YYYY-MM-DD' - required: false - default: '' - - schedule: - - cron: '41 12 * * *' - -jobs: - nightly_release_submit: - uses: ursacomputing/crossbow/.github/workflows/submit.yml@main - with: - report_type: release - date: '${{ inputs.date }}' - secrets: - CROSSBOW_GITHUB_TOKEN: ${{ secrets.CROSSBOW_GITHUB_TOKEN }} diff --git a/.github/workflows/nightly_tests_report.yml b/.github/workflows/nightly_tests_report.yml deleted file mode 100644 index 37fb9b88741..00000000000 --- a/.github/workflows/nightly_tests_report.yml +++ /dev/null @@ -1,25 +0,0 @@ -name: Report tests - -on: - workflow_dispatch: - inputs: - date: - description: 'ISO date string to use in the action. Format YYYY-MM-DD' - required: false - default: '' - - schedule: - - cron: '19 6 * * *' - -jobs: - nightly_tests_report: - uses: ursacomputing/crossbow/.github/workflows/report.yml@main - with: - report_type: tests - date: '${{ inputs.date }}' - secrets: - CROSSBOW_GITHUB_TOKEN: ${{ secrets.CROSSBOW_GITHUB_TOKEN }} - CROSSBOW_SMTP_USER: ${{ secrets.CROSSBOW_SMTP_USER }} - CROSSBOW_SMTP_PASSWORD: ${{ secrets.CROSSBOW_SMTP_PASSWORD }} - CROSSBOW_ZULIP_WEBHOOK: ${{ secrets.CROSSBOW_ZULIP_WEBHOOK }} - CROSSBOW_SLACK_WEBHOOK: ${{ secrets.CROSSBOW_SLACK_WEBHOOK }} diff --git a/.github/workflows/nightly_tests_submit.yml b/.github/workflows/nightly_tests_submit.yml deleted file mode 100644 index 5b40736ccd0..00000000000 --- a/.github/workflows/nightly_tests_submit.yml +++ /dev/null @@ -1,21 +0,0 @@ -name: Submit tests - -on: - workflow_dispatch: - inputs: - date: - description: 'ISO date string to use in the action. Format YYYY-MM-DD' - required: false - default: '' - - schedule: - - cron: '11 0 * * *' - -jobs: - nightly_tests_submit: - uses: ursacomputing/crossbow/.github/workflows/submit.yml@main - with: - report_type: tests - date: '${{ inputs.date }}' - secrets: - CROSSBOW_GITHUB_TOKEN: ${{ secrets.CROSSBOW_GITHUB_TOKEN }} diff --git a/.github/workflows/performance-release-report.yml b/.github/workflows/performance-release-report.yml deleted file mode 100644 index 3f7905c9a7e..00000000000 --- a/.github/workflows/performance-release-report.yml +++ /dev/null @@ -1,96 +0,0 @@ -name: Generate Performance Release Report - -concurrency: - group: ${{ github.workflow }} - cancel-in-progress: true - -on: - pull_request: - push: - branches: main - paths: - - ".github/workflows/performance-release-report.yml" - - "performance-release-report/performance-release-report.qmd" - workflow_dispatch: - inputs: - baseline_git_commit: - description: 'Baseline Git Commit' - required: false - contender_git_commit: - description: 'Contender Git Commit' - required: false - rc_label: - description: 'RC Label' - required: false - publish: - type: boolean - description: 'Publish to S3' - required: false - default: false - -permissions: - contents: read - -env: - ## payload vars - BASELINE_GIT_COMMIT: ${{ github.event.inputs.baseline_git_commit }} - CONTENDER_GIT_COMMIT: ${{ github.event.inputs.contender_git_commit }} - RC_LABEL: ${{ github.event.inputs.rc_label || 'manual' }} - -jobs: - build: - runs-on: ubuntu-22.04 - steps: - - - uses: actions/checkout@v3 - - - name: Setup Quarto - uses: quarto-dev/quarto-actions/setup@v2 - with: - version: 1.3.450 - - - name: Setup R - uses: r-lib/actions/setup-r@v2 - with: - r-version: '4.3.1' - use-public-rspm: true - - # Needed due to https://github.com/r-lib/actions/issues/618 - - name: Link renv.lock - run: ln -sf 'performance-release-report/renv.lock' - - - name: Setup renv - uses: r-lib/actions/setup-renv@v2 - env: - # This is set by setup-r - RENV_CONFIG_REPOS_OVERRIDE: "" - with: - cache-version: 1 - - - name: Build Report - uses: quarto-dev/quarto-actions/render@v2 - env: - BASELINE_GIT_COMMIT: ${{ env.BASELINE_GIT_COMMIT }} - CONTENDER_GIT_COMMIT: ${{ env.CONTENDER_GIT_COMMIT }} - with: - to: html - path: 'performance-release-report/performance-release-report.qmd' - - - name: Upload Rendered Perf Report - if: github.event_name == 'pull_request' - uses: actions/upload-artifact@v3 - with: - name: perf-report - path: 'performance-release-report/performance-release-report.html' - - - name: Upload result - if: ${{ github.event.inputs.publish == 'true' }} - working-directory: performance-release-report - shell: bash - env: - AWS_ACCESS_KEY_ID: ${{ secrets.CROSSBOW_DOCS_AWS_ACCESS_KEY_ID }} - AWS_SECRET_ACCESS_KEY: ${{ secrets.CROSSBOW_DOCS_AWS_SECRET_ACCESS_KEY }} - AWS_DEFAULT_REGION: ${{ secrets.CROSSBOW_DOCS_S3_BUCKET_REGION }} - BUCKET: ${{ secrets.CROSSBOW_DOCS_S3_BUCKET }} - run: | - aws s3 cp performance-release-report.html $BUCKET/release_reports/arrow-release-report-${{ env.RC_LABEL }}.html diff --git a/.github/workflows/prune_branches.yml b/.github/workflows/prune_branches.yml deleted file mode 100644 index 6bd6e53d539..00000000000 --- a/.github/workflows/prune_branches.yml +++ /dev/null @@ -1,43 +0,0 @@ -name: Prune Branches - -on: - workflow_dispatch: - inputs: - days: - description: 'Branches older than this amount of days will be deleted' - required: true - default: '90' - type: string - maximum: - description: 'Maximum limit of branches to delete for a single run' - required: true - default: '500' - type: string - push: - paths: - - '.github/workflows/prune_branches.yml' - schedule: - - cron: '0 */12 * * *' - -jobs: - remove: - name: Remove Old Branches - runs-on: ubuntu-latest - steps: - - name: Checkout Arrow - shell: bash - run: git clone https://github.com/apache/arrow - - name: Checkout Crossbow - shell: bash - run: git clone https://github.com/ursacomputing/crossbow - - uses: actions/setup-python@v4 - with: - python-version: '3.8' - - name: Install Archery - shell: bash - run: pip install -e arrow/dev/archery[crossbow] - - name: Delete Branches - shell: bash - env: - CROSSBOW_GITHUB_TOKEN: ${{ secrets.CROSSBOW_GITHUB_TOKEN }} - run: archery crossbow delete-old-branches --days ${{ github.event.inputs.days || '90'}} --maximum ${{ github.event.inputs.maximum || '500'}} diff --git a/.github/workflows/prune_previews.yml b/.github/workflows/prune_previews.yml deleted file mode 100644 index 1d30b4740e3..00000000000 --- a/.github/workflows/prune_previews.yml +++ /dev/null @@ -1,65 +0,0 @@ -name: Prune Previews - -on: - push: - paths: - - '.github/workflows/prune_previews.yml' - schedule: - - cron: '05 2 * * *' - -jobs: - remove: - name: Remove Stale Previews - runs-on: ubuntu-latest - steps: - - name: Find PRs - env: - AWS_ACCESS_KEY_ID: ${{ secrets.CROSSBOW_DOCS_AWS_ACCESS_KEY_ID }} - AWS_SECRET_ACCESS_KEY: ${{ secrets.CROSSBOW_DOCS_AWS_SECRET_ACCESS_KEY }} - AWS_DEFAULT_REGION: ${{ secrets.CROSSBOW_DOCS_S3_BUCKET_REGION }} - BUCKET: ${{ secrets.CROSSBOW_DOCS_S3_BUCKET }} - run: | - echo "PRs=$(aws s3 ls $BUCKET/pr_docs/ | sed 's/PRE//g' | tr -d '/' | tr '\n' ' ')" >> $GITHUB_ENV - - name: Find open PRs - uses: actions/github-script@v5 - id: find - with: - script: | - let prs = "${{ env.PRs }}".split(" ").filter(x => x) - async function not_open(id) { - let pr; - try { - pr = await github.rest.pulls.get({ - "owner": "apache", - "repo": "arrow", - "pull_number": id - }) - } - catch(err) { - //In case of error retrieving PR try to clean it. - //Example manually triggered job with different naming. - return(id) - } - if(pr.data.state !== "open") { - return(id) - } - return("") - } - - let del_prs = await Promise.all(prs.map(not_open)) - del_prs = del_prs.filter(x => x).join(" ") - console.log(`::set-output name=del_prs::${del_prs}`) - - name: Delete Dirs and Commit - if: steps.find.outputs.del_prs != '' - env: - pr_ids: ${{ steps.find.outputs.del_prs }} - AWS_ACCESS_KEY_ID: ${{ secrets.CROSSBOW_DOCS_AWS_ACCESS_KEY_ID }} - AWS_SECRET_ACCESS_KEY: ${{ secrets.CROSSBOW_DOCS_AWS_SECRET_ACCESS_KEY }} - AWS_DEFAULT_REGION: ${{ secrets.CROSSBOW_DOCS_S3_BUCKET_REGION }} - BUCKET: ${{ secrets.CROSSBOW_DOCS_S3_BUCKET }} - run: | - for id in ${pr_ids[@]} - do - aws s3 rm $BUCKET/pr_docs/$id --recursive - done - diff --git a/.github/workflows/report.yml b/.github/workflows/report.yml deleted file mode 100644 index fcf3019cc67..00000000000 --- a/.github/workflows/report.yml +++ /dev/null @@ -1,105 +0,0 @@ -name: Report - -on: - workflow_call: - inputs: - report_type: - required: true - type: string - date: - required: false - default: '' - type: string - secrets: - CROSSBOW_GITHUB_TOKEN: - required: true - CROSSBOW_SMTP_USER: - required: true - CROSSBOW_SMTP_PASSWORD: - required: true - CROSSBOW_ZULIP_WEBHOOK: - required: true - CROSSBOW_SLACK_WEBHOOK: - required: true - -jobs: - - nightly-report: - name: Send and build nightly ${{ inputs.report_type }} report - runs-on: ubuntu-latest - steps: - - name: Checkout Arrow - shell: bash - run: git clone https://github.com/apache/arrow - - name: Checkout Crossbow - uses: actions/checkout@v3 - with: - # If we use github.token then the push will not trigger CI - token: ${{ secrets.CROSSBOW_GITHUB_TOKEN }} - path: crossbow - fetch-depth: 0 - - uses: actions/setup-python@v4 - with: - python-version: '3.8' - - name: Install Archery - shell: bash - run: pip install -e arrow/dev/archery[crossbow] - - name: Get Date - id: date - shell: bash - env: - DATE: ${{ inputs.date }} - run: | - if [ -z $DATE ]; then - DATE=$(date -I) - fi - echo "::set-output name=date::$DATE" - - name: Send Report - shell: bash - env: - CROSSBOW_GITHUB_TOKEN: ${{ secrets.CROSSBOW_GITHUB_TOKEN }} - run: | - job_prefix=nightly-${{ inputs.report_type }}-${{ steps.date.outputs.date }} - job_id=$(archery crossbow latest-prefix ${job_prefix}) - echo "Sending report for job ${job_id}..." - archery crossbow report \ - --send \ - --sender-name Crossbow \ - --sender-email 'crossbow@ursacomputing.com' \ - --recipient-email 'builds@arrow.apache.org' \ - --smtp-user ${{ secrets.CROSSBOW_SMTP_USER }} \ - --smtp-password ${{ secrets.CROSSBOW_SMTP_PASSWORD }} \ - ${job_id} - echo "Sending Slack report for job ${job_id}..." - archery crossbow report-chat \ - --send \ - --no-fetch \ - --webhook ${{ secrets.CROSSBOW_SLACK_WEBHOOK }} \ - --extra-message-failure "@Jacob Wujciak @Raúl there has been some failures :cry:" \ - --extra-message-success "Well done! There are no failures! :tada:" \ - ${job_id} - echo "Sending Zulip report for job ${job_id}..." - archery crossbow report-chat \ - --send \ - --no-fetch \ - --webhook ${{ secrets.CROSSBOW_ZULIP_WEBHOOK }} \ - ${job_id} - echo "Generating ${job_id} CSV ..." - cd crossbow/csv_reports - archery crossbow report-csv \ - --save \ - --no-fetch \ - ${job_id} - - name: Commit CSV report - shell: bash - run: | - job_prefix=nightly-${{ inputs.report_type }}-${{ steps.date.outputs.date }} - cd crossbow - git pull - echo "Adding file to repo" - git add csv_reports/*.csv - echo "Commit CSV" - git -c user.name="github-actions[bot]" -c user.email="github-actions[bot]@users.noreply.github.com" \ - commit -m "Auto commit ${job_prefix} CSV" - echo "Pushing to repo" - git push origin diff --git a/.github/workflows/submit.yml b/.github/workflows/submit.yml deleted file mode 100644 index 09e7f199750..00000000000 --- a/.github/workflows/submit.yml +++ /dev/null @@ -1,49 +0,0 @@ -name: Submit - -on: - workflow_call: - inputs: - report_type: - required: true - type: string - date: - required: false - default: '' - type: string - secrets: - CROSSBOW_GITHUB_TOKEN: - required: true - -jobs: - - nightly-submit: - name: Submit nightly ${{ inputs.report_type }} builds - runs-on: ubuntu-latest - steps: - - name: Checkout Arrow - shell: bash - run: git clone https://github.com/apache/arrow - - name: Checkout Crossbow - shell: bash - run: git clone https://github.com/ursacomputing/crossbow - - uses: actions/setup-python@v4 - with: - python-version: '3.8' - - name: Install Archery - shell: bash - run: pip install -e arrow/dev/archery[crossbow] - - name: Get Date - id: date - shell: bash - env: - DATE: ${{ inputs.date }} - run: | - if [ -z $DATE ]; then - DATE=$(date -I) - fi - echo "::set-output name=date::$DATE" - - name: Submit Nightlies - shell: bash - env: - CROSSBOW_GITHUB_TOKEN: ${{ secrets.CROSSBOW_GITHUB_TOKEN }} - run: archery crossbow submit --job-prefix nightly-${{ inputs.report_type }}-${{ steps.date.outputs.date }} --group nightly-${{ inputs.report_type }} diff --git a/.github/workflows/token_expiration.yml b/.github/workflows/token_expiration.yml deleted file mode 100644 index cfc8e180e6e..00000000000 --- a/.github/workflows/token_expiration.yml +++ /dev/null @@ -1,50 +0,0 @@ -name: Token expiration check - -on: - workflow_dispatch: - inputs: - days: - description: 'Amount of days allowed for token validity.' - required: true - default: '30' - type: string - - schedule: - # Mondays - - cron: '0 0 * * 1' - -jobs: - token-expiration-check: - name: Validate token expiration date - runs-on: ubuntu-latest - steps: - - name: Checkout Arrow - shell: bash - run: git clone https://github.com/apache/arrow - - name: Checkout Crossbow - uses: actions/checkout@v3 - with: - # If we use github.token then the push will not trigger CI - token: ${{ secrets.CROSSBOW_GITHUB_TOKEN }} - path: crossbow - fetch-depth: 0 - - uses: actions/setup-python@v4 - with: - python-version: '3.11' - - name: Install Archery - shell: bash - run: pip install -e arrow/dev/archery[crossbow] - - name: Check token expiration - shell: bash - env: - CROSSBOW_GITHUB_TOKEN: ${{ secrets.CROSSBOW_GITHUB_TOKEN }} - run: | - echo "Checking whether to notify on token expiration date" - archery crossbow notify-token-expiration \ - --send \ - --sender-name Crossbow \ - --sender-email 'crossbow@ursacomputing.com' \ - --recipient-email 'builds@arrow.apache.org' \ - --smtp-user ${{ secrets.CROSSBOW_SMTP_USER }} \ - --smtp-password ${{ secrets.CROSSBOW_SMTP_PASSWORD }} \ - --days ${{ inputs.days || '30'}} diff --git a/.github/workflows/windows_docker.yml b/.github/workflows/windows_docker.yml deleted file mode 100644 index 136893f93ab..00000000000 --- a/.github/workflows/windows_docker.yml +++ /dev/null @@ -1,79 +0,0 @@ -name: Build Windows Base Images -on: - workflow_dispatch: - inputs: - vcpkg-version: - description: 'VCPKG Version to use in building the images.' - default: '' - arrow-repo: - description: 'Repository to checkout arrow from.' - required: true - default: 'apache/arrow' - arrow-ref: - description: 'Ref to checkout from arrow-repo.' - required: true - default: 'main' - -jobs: - build: - name: "Build Windows images" - runs-on: windows-2019 - permissions: - contents: read - packages: write - env: - # Turned on by default in .env but Windows does not support buildkit - # BUILDKIT_INLINE_CACHE: 1 - DOCKER_BUILDKIT: 0 - # archery uses this environment variable - PYTHON: "3.10" - # this is a private repository at the moment (mostly because of licensing - # consideration of windows images with visual studio), but anyone can - # recreate the image by manually building it via: - # `archery build python-wheel-windows-vs2017` - # note that we don't run docker build since there wouldn't be a cache hit - # and rebuilding the dependencies takes a fair amount of time - REPO: ghcr.io/ursacomputing/arrow - - steps: - - name: Checkout Arrow - uses: actions/checkout@v3 - with: - repository: ${{ github.event.inputs.arrow-repo || 'apache/arrow'}} - path: arrow - ref: ${{ github.event.inputs.arrow-ref || 'main'}} - - - name: Login to GitHub Container Registry - shell: bash - run: echo ${{secrets.GITHUB_TOKEN }} | docker login ghcr.io -u ${{ github.actor }} --password-stdin - - - name: Set up Python - uses: actions/setup-python@v4 - with: - python-version: 3.8 - - - name: Install Archery - shell: bash - run: pip install -e arrow/dev/archery[all] - - - name: Set custom VCPKG version - if: github.event.inputs.vcpkg-version != '' - shell: bash - run: | - echo "VCPKG=${{ github.event.inputs.vcpkg-version }}" >> $GITHUB_ENV - - - name: Build image - shell: cmd - run: | - set PYTHON=3.7&& archery docker build --no-pull python-wheel-windows-vs2017 - set PYTHON=3.8&& archery docker build --no-pull python-wheel-windows-vs2017 - set PYTHON=3.9&& archery docker build --no-pull python-wheel-windows-vs2017 - set PYTHON=3.10&& archery docker build --no-pull python-wheel-windows-vs2017 - - - name: Push Image - shell: cmd - run: | - set PYTHON=3.7&& archery docker push python-wheel-windows-vs2017 - set PYTHON=3.8&& archery docker push python-wheel-windows-vs2017 - set PYTHON=3.9&& archery docker push python-wheel-windows-vs2017 - set PYTHON=3.10&& archery docker push python-wheel-windows-vs2017 diff --git a/.gitignore b/.gitignore deleted file mode 100644 index 7034d740af7..00000000000 --- a/.gitignore +++ /dev/null @@ -1,7 +0,0 @@ -performance-release-report.html -performance-release-report_cache -performance-release-report_files -performance-release-report.html -crossbow-nightly-report.html -crossbow-nightly-report_cache -all.yml \ No newline at end of file diff --git a/.travis.yml b/.travis.yml index 56223d5a926..f4d0062a087 100644 --- a/.travis.yml +++ b/.travis.yml @@ -1,7 +1,9 @@ + branches: only: + - master - /.*-travis-.*/ os: linux dist: trusty -language: generic \ No newline at end of file +language: generic diff --git a/LICENSE b/LICENSE deleted file mode 100644 index 261eeb9e9f8..00000000000 --- a/LICENSE +++ /dev/null @@ -1,201 +0,0 @@ - Apache License - Version 2.0, January 2004 - http://www.apache.org/licenses/ - - TERMS AND CONDITIONS FOR USE, REPRODUCTION, AND DISTRIBUTION - - 1. Definitions. - - "License" shall mean the terms and conditions for use, reproduction, - and distribution as defined by Sections 1 through 9 of this document. - - "Licensor" shall mean the copyright owner or entity authorized by - the copyright owner that is granting the License. - - "Legal Entity" shall mean the union of the acting entity and all - other entities that control, are controlled by, or are under common - control with that entity. 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-For the triggered tasks see the nightly group of crossbow's -[task definition file](https://github.com/apache/arrow/blob/main/dev/tasks/tasks.yml). - - -Nightly report CSVs are stored on the `csv_reports` directory. \ No newline at end of file diff --git a/crossbow-nightly-report/.Rprofile b/crossbow-nightly-report/.Rprofile deleted file mode 100644 index 81b960f5c6a..00000000000 --- a/crossbow-nightly-report/.Rprofile +++ /dev/null @@ -1 +0,0 @@ -source("renv/activate.R") diff --git a/crossbow-nightly-report/R/functions.R b/crossbow-nightly-report/R/functions.R deleted file mode 100644 index d2a7782b657..00000000000 --- a/crossbow-nightly-report/R/functions.R +++ /dev/null @@ -1,129 +0,0 @@ -is_dev <- function() { - Sys.getenv("GITHUB_ACTIONS") != "true" -} - -dropdown_helper <- function(values, name, element_id) { - htmltools::tags$select( - # Set to undefined to clear the filter - onchange = glue("Reactable.setFilter('{element_id}', '{name}', event.target.value || undefined)"), - # "All" has an empty value to clear the filter, and is the default option - htmltools::tags$option(value = "", "All"), - lapply(unique(values), htmltools::tags$option), - "aria-label" = sprintf("Filter %s", name) - ) -} - -arrow_commit_links <- function(sha) { - glue("{substring(sha, 1, 7)}") -} - -arrow_compare_links <- function(sha1, sha2) { - comp_link <- glue("{substring(sha1, 1, 7)}") - - if (rlang::is_empty(comp_link)) { - return(glue("Build has not yet been successful")) - } - return(comp_link) -} - -format_links <- function(link) { - glue("{basename(link)}") -} - -make_nice_names <- function(x) { - toTitleCase(gsub("_", " ", names(x))) -} - -arrow_build_table <- function(nightly_data, type, task) { - type_task_data <- nightly_data %>% - filter(build_type == type) %>% - filter(task_name == task) - - ## filter for when the most recent run is a failure - ordered_only_recent_fails <- type_task_data %>% - filter(task_name %in% task_name[nightly_date == max(nightly_date) & task_status != "success"]) %>% - arrange(desc(nightly_date)) %>% - mutate(task_status = case_when( - task_status == "success" ~ "pass", - task_status == "failure" ~ "fail", - TRUE ~ task_status - )) - - if (nrow(ordered_only_recent_fails) == 0) { - ## if there are no failures, return a version of the table that reflects that - days <- as.numeric( - difftime( - ymd(Sys.Date(), tz = "UTC"), - max(type_task_data$nightly_date) - ) - ) - success_df <- type_task_data %>% - slice_max(order_by = nightly_date) %>% - mutate( - since_last_successful_build = days, - last_successful_commit = arrow_commit_links(arrow_commit), - last_successful_build = glue("{task_status}"), - most_recent_status = "passing" - ) %>% - select(task_name, most_recent_status, since_last_successful_build, last_successful_commit, last_successful_build, build_type) - return(success_df) - } - - ## find first failure index - idx_recent_fail <- rle(ordered_only_recent_fails$task_status)$lengths[1] - - ## expand failure index and give it some names - failure_df <- tibble(fails_plus_one = seq(1, idx_recent_fail + 1)) %>% - mutate(fail_label = case_when( - fails_plus_one == idx_recent_fail ~ "first_failure", - fails_plus_one == 1 ~ "most_recent_failure", - fails_plus_one == idx_recent_fail + 1 ~ "last_successful_build", - TRUE ~ paste0(fails_plus_one, " days ago") - )) %>% - filter(fails_plus_one <= 9 | grepl("failure|build", fail_label)) - - - ## inner_join to ordered data - df <- ordered_only_recent_fails %>% - rowid_to_column() %>% - inner_join(failure_df, by = c("rowid" = "fails_plus_one")) - - - if (all(type_task_data$task_status %in% "failure")) { - days <- NA_real_ - } else { - ## days since last successful build (need to add one) - days <- sum(as.numeric( - difftime( - df$nightly_date[df$fail_label == "most_recent_failure"], - df$nightly_date[df$fail_label == "last_successful_build"] - ) - ), 1) - } - - - get_commit <- function(label) { - df$arrow_commit[df$fail_label == label] - } - - df %>% - arrange(desc(fail_label)) %>% - mutate(build_links = glue("{task_status}")) %>% - select(task_name, build_type, build_links, fail_label) %>% - pivot_wider(names_from = fail_label, values_from = build_links) %>% - mutate( - since_last_successful_build = days, - last_successful_commit = arrow_compare_links(get_commit("last_successful_build"), get_commit("first_failure")), - most_recent_status = "failing", - .after = build_type - ) -} - -crossbow_theme <- function(data, ...) { - data %>% - tab_options( - table.font.size = 14, - ... - ) %>% - opt_all_caps() -} \ No newline at end of file diff --git a/crossbow-nightly-report/crossbow-nightly-report.qmd b/crossbow-nightly-report/crossbow-nightly-report.qmd deleted file mode 100644 index b46a5120669..00000000000 --- a/crossbow-nightly-report/crossbow-nightly-report.qmd +++ /dev/null @@ -1,435 +0,0 @@ ---- -title: "Crossbow Nightly Report" -execute: - warning: false - echo: false -format: - html: - grid: - sidebar-width: 0px - body-width: 2000px - margin-width: 340px - gutter-width: 1.5rem - self-contained: true - page-layout: full - margin-left: 30px - link-external-newwindow: true - theme: [cosmo, crossbow.scss] ---- - -```{r setup} -#| include: false -knitr::opts_chunk$set( - warning = FALSE, - message = FALSE, - echo = FALSE, - fig.width = 8, - fig.height = 6 -) - -library(readr) -library(ggplot2) -library(gt) -library(dplyr) -library(glue) -library(purrr) -library(tidyr) -library(cli) -library(tools) -library(tibble) -library(lubridate) -library(yaml) -library(arrow) -library(reactable) -library(htmltools) - -source("R/functions.R") -``` - -```{r vars} -lookback_window <- Sys.getenv("CROSSBOW_LOOKBACK_WINDOW", 120) -``` - - -```{r data load} -#| messages: false - -cols <- c( - "task_name", "task_build_status", "build_links", "task_branch_name_on_the_crossbow_repo", - "task_ci_type", "extra_params", "task_template_used", "arrow_repository_commit" -) - -lookback_date <- Sys.Date() - days(lookback_window) - -## Here is where we tidy the data until a 1 value 1 cell data structure -nightly <- open_csv_dataset("../csv_reports") %>% - mutate(file_path = add_filename()) %>% - mutate(build_links = gsub("^(.*?),.*", "\\1", build_links)) %>% ## get rid of multiple build links - mutate(build_links = gsub("\\?.*", "", gsub("\\['|'\\]|'", "", build_links))) %>% ## gets rid of the extra formatting - mutate(nightly_name = gsub("\\.csv$", "", gsub("^.*/", "", file_path))) %>% - mutate(build_type = str_to_title((gsub("[0-9]|nightly|-", "", nightly_name)))) %>% - mutate(nightly_date = ymd(gsub(".*-(\\d{4}-\\d{2}-\\d{2})-.*", "\\1", nightly_name))) %>% - as_record_batch_reader() %>% - filter(nightly_date >= lookback_date) %>% - collect() - - -most_recent_commit <- unique(nightly$arrow_commit[nightly$nightly_date == max(nightly$nightly_date)]) -``` - - - -This report builds in sync with the email notifications (`builds@arrow.apache.org`). `r pluralize('Most recent commit{?s} are: {arrow_commit_links(most_recent_commit)}')`. The report examines data from the last `r lookback_window` days. - - -# Summary -```{r} -pass_pct <- nightly %>% - count(nightly_date, arrow_commit, build_type, task_status) %>% - group_by(nightly_date, build_type) %>% - mutate(prop = n / sum(n)) %>% - filter(task_status == "success") %>% - ungroup() - -## 1% threshold -## days -over_x_days <- 10 -trend <- pass_pct %>% - filter(nightly_date > max(nightly_date) - ddays(over_x_days)) %>% - nest(data = -build_type) %>% - mutate(model = map(data, ~ lm(prop ~ nightly_date, .x))) %>% - mutate(slope_pct_day = map_dbl(model, ~ coef(.x)["nightly_date"])) %>% - mutate(failure_trend = case_when( - slope_pct_day < -0.01 ~ "increasing", - slope_pct_day > 0.01 ~ "decreasing", - TRUE ~ "stable" - )) %>% - select(build_type, failure_trend) - - -nightly_summary <- pass_pct %>% - group_by(build_type) %>% - filter(nightly_date == max(nightly_date)) %>% - ungroup() %>% - pivot_wider(names_from = task_status, values_from = n, values_fill = 0) %>% - mutate(arrow_commit = arrow_commit_links(arrow_commit)) %>% - arrange(desc(nightly_date)) %>% - left_join(trend, by = c("build_type")) - -names(nightly_summary) <- make_nice_names(nightly_summary) - -nightly_summary %>% - gt() %>% - fmt_markdown("Arrow Commit") %>% - tab_footnote( - footnote = glue("Trend calculated over {over_x_days} days"), - locations = cells_column_labels( - columns = `Failure Trend` - ) - ) %>% - opt_all_caps() -``` - - -```{r ojs-hand-off} -ojs_define(plot_end_date = max(pass_pct$nightly_date)) -ojs_define(plot_default_date = max(pass_pct$nightly_date) - months(1)) -ojs_define(ojs_pass_pct = pass_pct) -``` - -# Trend - -```{ojs functions} -trendPlot = function(data) { - // variables to use - const spec = ({ - x: "nightly_date", - y: "prop", - stroke: "build_type", - fy: "build_type" - }) - - const added_spec = Object.assign( - {}, - spec, - { - tip: true, - symbol: "circle", - fill: "build_type", - opacity: 0.7 - } - ) - return Plot.plot({ - width: 1200, - height: 600, - inset: 10, - nice: true, - color: {scheme: "viridis"}, - facet: { - data: data, - y: "build_type", - marginRight: 90, - marginLeft: 10, - }, - fy: { - inset: 15, - padding: 0.1, - label: "" - }, - y: { - domain: [0, 100], - label: "Proportion successful (%)", - percent: true, - labelOffset: 40 - }, - x: { - type: "utc", - label: "Date", - tickFormat: "%b '%y", - }, - style: { - fontSize: "16px" - }, - marks: [ - Plot.lineY(data, Plot.windowY(10, spec)), - Plot.frame(), - Plot.dot(data, added_spec), - Plot.axisX({ticks: d3.utcMonth.every(1), tickFormat: " %b %d", tickSize: 14, tickPadding: -8, textAnchor: "start"}), - Plot.axisX({ticks: d3.utcYear, tickFormat: "\n %Y", tickSize: 24, tickPadding: -20, textAnchor: "start"}), - Plot.gridX({ticks: d3.utcMonth}) - ] - }) -} -``` - -```{ojs setup-ojs} -// import newer observable -Plot = await import("https://esm.sh/@observablehq/plot"); -import { aq, op } from '@uwdata/arquero'; -parser = d3.timeParse("%Y-%m-%d"); -import {slider as slide} from "@jashkenas/inputs"; // more configurable slider -timeScale = d3.scaleTime() - .domain([initialPlotStartDate, plotEndDate]) - .range([0, d3.timeDay.count(initialPlotStartDate, plotEndDate)]); - -passPct = aq.from(transpose(ojs_pass_pct)) - .derive({ nightly_date: aq.escape(d => parser(d.nightly_date)) }) -``` - -```{ojs date-slider} -minNightlyDate = passPct - .rollup({ - min_nightly_date: d => op.min(d.nightly_date) - }) - .array('min_nightly_date') - -// Slider for date -initialPlotStartDate = new Date(minNightlyDate) -plotEndDate = new Date(plot_end_date) -plotDefaultDate = new Date(plot_default_date) - -// a slider that starts at the default date (value of CROSSBOW_LOOKBACK_WINDOW) -viewof slider = slide({ - min: 0, - max: d3.timeDay.count(initialPlotStartDate, plotEndDate), - format: d => md`${d3.timeFormat("%B %d, %Y")(timeScale.invert(d))}`, - title: "Slide to select a Date range", - value: d3.timeDay.count(initialPlotStartDate, plotDefaultDate), - step: 2 -}) -// turn slide number back into a date -date = timeScale.invert(slider) -``` - -```{ojs trend-plot} -//| echo: false - -passPctDateSub = passPct - .filter(aq.escape(d => d.nightly_date > date)) - -// Check for empty rows and alert user -{ - if (passPctDateSub.numRows() == 0) { - alert("No data for this date range. Please select a different date range.") - } - return html`` -} -trendPlot(passPctDateSub) -``` - -# Build Status - -```{r build_status} -#| results: asis -# this file can be generated with `archery crossbow check-config > all.yml` -tasks <- yaml.load_file("../all.yml") - -tests <- tasks$groups[["nightly-tests"]] -packaging <- tasks$groups[["nightly-packaging"]] -release <- tasks$groups[["nightly-release"]] -nightly_regex <- paste0(c(tests, packaging, release), collapse = "|") - -active_jobs <- tasks$tasks %>% names() %>% grep(nightly_regex, x = ., value = TRUE) - -map_params <- nightly %>% - distinct(task_name, build_type) %>% - filter(task_name %in% active_jobs) - -build_table <- map2_df(map_params$build_type, map_params$task_name, ~ arrow_build_table(nightly, type = .x, task = .y)) -``` - - -```{r build_table} -bs_nightly_tbl <- build_table %>% - select(where(~ sum(!is.na(.x)) > 0)) %>% ## remove any columns with no data - arrange(build_type, most_recent_status, desc(since_last_successful_build)) %>% - rowwise() %>% - mutate( - since_last_successful_build = ifelse( - is.na(since_last_successful_build), "-", - pluralize("{since_last_successful_build} day{?s}") - ) - ) %>% - ungroup() - -## Need to sort columns at this level because of variable fail dates -## TODO: find something a little less hacky -bs_nightly_tbl_sorted <- bs_nightly_tbl[, rev(sort(names(bs_nightly_tbl)))] %>% - relocate(any_of("most_recent_failure"), .after = last_col()) %>% - relocate(any_of(c("last_successful_build", "first_failure")), .after = last_successful_commit) %>% - relocate(build_type, .before = task_name) - -## set a row number such all the failing builds are always displayed -tbl_row_n <- bs_nightly_tbl_sorted %>% - filter(most_recent_status == "failing") %>% - count(build_type) %>% - filter(n == max(n)) %>% - pull(n) - -names(bs_nightly_tbl_sorted) <- make_nice_names(bs_nightly_tbl_sorted) - -## html element id -build_element_id <- "build_status" - -bs_nightly_tbl_sorted %>% - reactable( - filterable = TRUE, - highlight = TRUE, - wrap = TRUE, - # style = list(fontSize = "0.6rem"), - defaultPageSize = tbl_row_n, - rowStyle = function(index) { - if (bs_nightly_tbl_sorted[index, "Most Recent Status"] == "failing") { - list(background = "#ffe4e4") - } else { - list(background = "#d1e8ff") - } - }, - defaultColDef = reactable::colDef( - html = TRUE, - class = "bw_table_cells", - headerClass = "bw_table_header", - headerVAlign = "bottom", - width = 50 - ), - columns = list( - `Build Type` = reactable::colDef( - width = 80, - filterInput = function(values, name) { - dropdown_helper(values, name, build_element_id) - } - ), - `Task Name` = reactable::colDef( - width = 110 - ), - `Since Last Successful Build` = reactable::colDef( - width = 100, - filterInput = function(values, name) { - dropdown_helper(values, name, build_element_id) - } - ), - `Most Recent Status` = reactable::colDef( - width = 70, - filterInput = function(values, name) { - dropdown_helper(values, name, build_element_id) - } - ), - `Last Successful Commit` = reactable::colDef( - width = 80 - ), - `Last Successful Build` = reactable::colDef( - width = 80 - ), - `First Failure` = reactable::colDef( - width = 60 - ), - `Most Recent Failure` = reactable::colDef( - width = 60 - ) - ), - elementId = build_element_id - ) -``` - -# Logs - -```{r error-logs} -#| results: asis -#| eval: true - -error_element_id <- "error-logs-id" -nightly_sub_tbl <- nightly %>% - select(nightly_date, task_status, task_name, build_type, build_links, task_branch_name = crossbow_branch_url) %>% - mutate( - build_links = format_links(build_links), - task_branch_name = format_links(task_branch_name) - ) %>% - arrange(desc(nightly_date)) - -names(nightly_sub_tbl) <- make_nice_names(nightly_sub_tbl) - -nightly_sub_tbl %>% - reactable( - filterable = TRUE, - highlight = TRUE, - wrap = TRUE, - rowStyle = function(index) { - if (nightly_sub_tbl[index, "Task Status"] %in% c("failure", "error")) { - list(background = "#ffe4e4") - } else { - list(background = "#d1e8ff") - } - }, - defaultColDef = reactable::colDef( - html = TRUE, - class = "bw_table_cells", - headerClass = "bw_table_header", - headerVAlign = "bottom", - width = 100 - ), - columns = list( - `Task Status` = reactable::colDef( - width = 80, - filterInput = function(values, name) { - dropdown_helper(values, name, error_element_id) - } - ), - `Task Name` = reactable::colDef( - width = 200, - filterInput = function(values, name) { - dropdown_helper(values, name, error_element_id) - } - ), - `Build Type` = reactable::colDef( - width = 100, - filterInput = function(values, name) { - dropdown_helper(values, name, error_element_id) - } - ), - `Task Branch Name` = reactable::colDef( - width = 300 - ) - ), - elementId = error_element_id - ) -``` \ No newline at end of file diff --git a/crossbow-nightly-report/crossbow.scss b/crossbow-nightly-report/crossbow.scss deleted file mode 100644 index 9b265c0f6bd..00000000000 --- a/crossbow-nightly-report/crossbow.scss +++ /dev/null @@ -1,19 +0,0 @@ -/*-- scss:defaults --*/ - -// variables to change -// https://github.com/twbs/bootstrap/blob/main/scss/_variables.scss - 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"progress", - "rlang", - "stats", - "tibble", - "tidyselect", - "tzdb", - "vctrs", - "withr" - ], - "Hash": "8318e64ffb3a70e652494017ec455561" - }, - "withr": { - "Package": "withr", - "Version": "2.5.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "grDevices", - "graphics", - "stats" - ], - "Hash": "c0e49a9760983e81e55cdd9be92e7182" - }, - "xfun": { - "Package": "xfun", - "Version": "0.39", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "stats", - "tools" - ], - "Hash": "8f56e9acb54fb525e66464d57ab58bcb" - }, - "xml2": { - "Package": "xml2", - "Version": "1.3.4", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "methods" - ], - "Hash": "7dc765ac9b909487326a7d471fdd3821" - }, - "yaml": { - "Package": "yaml", - "Version": "2.3.7", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "0d0056cc5383fbc240ccd0cb584bf436" - } - } -} diff --git a/crossbow-nightly-report/renv/.gitignore b/crossbow-nightly-report/renv/.gitignore deleted file mode 100644 index 0ec0cbba2d7..00000000000 --- a/crossbow-nightly-report/renv/.gitignore +++ /dev/null @@ -1,7 +0,0 @@ -library/ -local/ -cellar/ -lock/ -python/ -sandbox/ -staging/ diff --git a/crossbow-nightly-report/renv/activate.R b/crossbow-nightly-report/renv/activate.R deleted file mode 100644 index cc742fc96ff..00000000000 --- a/crossbow-nightly-report/renv/activate.R +++ /dev/null @@ -1,1181 +0,0 @@ - -local({ - - # the requested version of renv - version <- "1.0.0" - attr(version, "sha") <- NULL - - # the project directory - project <- getwd() - - # figure out whether the autoloader is enabled - enabled <- local({ - - # first, check config option - override <- getOption("renv.config.autoloader.enabled") - if (!is.null(override)) - return(override) - - # next, check environment variables - # TODO: prefer using the configuration one in the future - envvars <- c( - "RENV_CONFIG_AUTOLOADER_ENABLED", - "RENV_AUTOLOADER_ENABLED", - "RENV_ACTIVATE_PROJECT" - ) - - for (envvar in envvars) { - envval <- Sys.getenv(envvar, unset = NA) - if (!is.na(envval)) - return(tolower(envval) %in% c("true", "t", "1")) - } - - # enable by default - TRUE - - }) - - if (!enabled) - return(FALSE) - - # avoid recursion - if (identical(getOption("renv.autoloader.running"), TRUE)) { - warning("ignoring recursive attempt to run renv autoloader") - return(invisible(TRUE)) - } - - # signal that we're loading renv during R startup - options(renv.autoloader.running = TRUE) - on.exit(options(renv.autoloader.running = NULL), add = TRUE) - - # signal that we've consented to use renv - options(renv.consent = TRUE) - - # load the 'utils' package eagerly -- this ensures that renv shims, which - # mask 'utils' packages, will come first on the search path - library(utils, lib.loc = .Library) - - # unload renv if it's already been loaded - if ("renv" %in% loadedNamespaces()) - unloadNamespace("renv") - - # load bootstrap tools - `%||%` <- function(x, y) { - if (is.null(x)) y else x - } - - catf <- function(fmt, ..., appendLF = TRUE) { - - quiet <- getOption("renv.bootstrap.quiet", default = FALSE) - if (quiet) - return(invisible()) - - msg <- sprintf(fmt, ...) - cat(msg, file = stdout(), sep = if (appendLF) "\n" else "") - - invisible(msg) - - } - - header <- function(label, - ..., - prefix = "#", - suffix = "-", - n = min(getOption("width"), 78)) - { - label <- sprintf(label, ...) - n <- max(n - nchar(label) - nchar(prefix) - 2L, 8L) - if (n <= 0) - return(paste(prefix, label)) - - tail <- paste(rep.int(suffix, n), collapse = "") - paste0(prefix, " ", label, " ", tail) - - } - - startswith <- function(string, prefix) { - substring(string, 1, nchar(prefix)) == prefix - } - - bootstrap <- function(version, library) { - - friendly <- renv_bootstrap_version_friendly(version) - section <- header(sprintf("Bootstrapping renv %s", friendly)) - catf(section) - - # attempt to download renv - catf("- Downloading renv ... ", appendLF = FALSE) - withCallingHandlers( - tarball <- renv_bootstrap_download(version), - error = function(err) { - catf("FAILED") - stop("failed to download:\n", conditionMessage(err)) - } - ) - catf("OK") - on.exit(unlink(tarball), add = TRUE) - - # now attempt to install - catf("- Installing renv ... ", appendLF = FALSE) - withCallingHandlers( - status <- renv_bootstrap_install(version, tarball, library), - error = function(err) { - catf("FAILED") - stop("failed to install:\n", conditionMessage(err)) - } - ) - catf("OK") - - # add empty line to break up bootstrapping from normal output - catf("") - - return(invisible()) - } - - renv_bootstrap_tests_running <- function() { - getOption("renv.tests.running", default = FALSE) - } - - renv_bootstrap_repos <- function() { - - # get CRAN repository - cran <- getOption("renv.repos.cran", "https://cloud.r-project.org") - - # check for repos override - repos <- Sys.getenv("RENV_CONFIG_REPOS_OVERRIDE", unset = NA) - if (!is.na(repos)) { - - # check for RSPM; if set, use a fallback repository for renv - rspm <- Sys.getenv("RSPM", unset = NA) - if (identical(rspm, repos)) - repos <- c(RSPM = rspm, CRAN = cran) - - return(repos) - - } - - # check for lockfile repositories - repos <- tryCatch(renv_bootstrap_repos_lockfile(), error = identity) - if (!inherits(repos, "error") && length(repos)) - return(repos) - - # retrieve current repos - repos <- getOption("repos") - - # ensure @CRAN@ entries are resolved - repos[repos == "@CRAN@"] <- cran - - # add in renv.bootstrap.repos if set - default <- c(FALLBACK = "https://cloud.r-project.org") - extra <- getOption("renv.bootstrap.repos", default = default) - repos <- c(repos, extra) - - # remove duplicates that might've snuck in - dupes <- duplicated(repos) | duplicated(names(repos)) - repos[!dupes] - - } - - renv_bootstrap_repos_lockfile <- function() { - - lockpath <- Sys.getenv("RENV_PATHS_LOCKFILE", unset = "renv.lock") - if (!file.exists(lockpath)) - return(NULL) - - lockfile <- tryCatch(renv_json_read(lockpath), error = identity) - if (inherits(lockfile, "error")) { - warning(lockfile) - return(NULL) - } - - repos <- lockfile$R$Repositories - if (length(repos) == 0) - return(NULL) - - keys <- vapply(repos, `[[`, "Name", FUN.VALUE = character(1)) - vals <- vapply(repos, `[[`, "URL", FUN.VALUE = character(1)) - names(vals) <- keys - - return(vals) - - } - - renv_bootstrap_download <- function(version) { - - sha <- attr(version, "sha", exact = TRUE) - - methods <- if (!is.null(sha)) { - - # attempting to bootstrap a development version of renv - c( - function() renv_bootstrap_download_tarball(sha), - function() renv_bootstrap_download_github(sha) - ) - - } else { - - # attempting to bootstrap a release version of renv - c( - function() renv_bootstrap_download_tarball(version), - function() renv_bootstrap_download_cran_latest(version), - function() renv_bootstrap_download_cran_archive(version) - ) - - } - - for (method in methods) { - path <- tryCatch(method(), error = identity) - if (is.character(path) && file.exists(path)) - return(path) - } - - stop("All download methods failed") - - } - - renv_bootstrap_download_impl <- function(url, destfile) { - - mode <- "wb" - - # https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17715 - fixup <- - Sys.info()[["sysname"]] == "Windows" && - substring(url, 1L, 5L) == "file:" - - if (fixup) - mode <- "w+b" - - args <- list( - url = url, - destfile = destfile, - mode = mode, - quiet = TRUE - ) - - if ("headers" %in% names(formals(utils::download.file))) - args$headers <- renv_bootstrap_download_custom_headers(url) - - do.call(utils::download.file, args) - - } - - renv_bootstrap_download_custom_headers <- function(url) { - - headers <- getOption("renv.download.headers") - if (is.null(headers)) - return(character()) - - if (!is.function(headers)) - stopf("'renv.download.headers' is not a function") - - headers <- headers(url) - if (length(headers) == 0L) - return(character()) - - if (is.list(headers)) - headers <- unlist(headers, recursive = FALSE, use.names = TRUE) - - ok <- - is.character(headers) && - is.character(names(headers)) && - all(nzchar(names(headers))) - - if (!ok) - stop("invocation of 'renv.download.headers' did not return a named character vector") - - headers - - } - - renv_bootstrap_download_cran_latest <- function(version) { - - spec <- renv_bootstrap_download_cran_latest_find(version) - type <- spec$type - repos <- spec$repos - - baseurl <- utils::contrib.url(repos = repos, type = type) - ext <- if (identical(type, "source")) - ".tar.gz" - else if (Sys.info()[["sysname"]] == "Windows") - ".zip" - else - ".tgz" - name <- sprintf("renv_%s%s", version, ext) - url <- paste(baseurl, name, sep = "/") - - destfile <- file.path(tempdir(), name) - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (inherits(status, "condition")) - return(FALSE) - - # report success and return - destfile - - } - - renv_bootstrap_download_cran_latest_find <- function(version) { - - # check whether binaries are supported on this system - binary <- - getOption("renv.bootstrap.binary", default = TRUE) && - !identical(.Platform$pkgType, "source") && - !identical(getOption("pkgType"), "source") && - Sys.info()[["sysname"]] %in% c("Darwin", "Windows") - - types <- c(if (binary) "binary", "source") - - # iterate over types + repositories - for (type in types) { - for (repos in renv_bootstrap_repos()) { - - # retrieve package database - db <- tryCatch( - as.data.frame( - utils::available.packages(type = type, repos = repos), - stringsAsFactors = FALSE - ), - error = identity - ) - - if (inherits(db, "error")) - next - - # check for compatible entry - entry <- db[db$Package %in% "renv" & db$Version %in% version, ] - if (nrow(entry) == 0) - next - - # found it; return spec to caller - spec <- list(entry = entry, type = type, repos = repos) - return(spec) - - } - } - - # if we got here, we failed to find renv - fmt <- "renv %s is not available from your declared package repositories" - stop(sprintf(fmt, version)) - - } - - renv_bootstrap_download_cran_archive <- function(version) { - - name <- sprintf("renv_%s.tar.gz", version) - repos <- renv_bootstrap_repos() - urls <- file.path(repos, "src/contrib/Archive/renv", name) - destfile <- file.path(tempdir(), name) - - for (url in urls) { - - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (identical(status, 0L)) - return(destfile) - - } - - return(FALSE) - - } - - renv_bootstrap_download_tarball <- function(version) { - - # if the user has provided the path to a tarball via - # an environment variable, then use it - tarball <- Sys.getenv("RENV_BOOTSTRAP_TARBALL", unset = NA) - if (is.na(tarball)) - return() - - # allow directories - if (dir.exists(tarball)) { - name <- sprintf("renv_%s.tar.gz", version) - tarball <- file.path(tarball, name) - } - - # bail if it doesn't exist - if (!file.exists(tarball)) { - - # let the user know we weren't able to honour their request - fmt <- "- RENV_BOOTSTRAP_TARBALL is set (%s) but does not exist." - msg <- sprintf(fmt, tarball) - warning(msg) - - # bail - return() - - } - - catf("- Using local tarball '%s'.", tarball) - tarball - - } - - renv_bootstrap_download_github <- function(version) { - - enabled <- Sys.getenv("RENV_BOOTSTRAP_FROM_GITHUB", unset = "TRUE") - if (!identical(enabled, "TRUE")) - return(FALSE) - - # prepare download options - pat <- Sys.getenv("GITHUB_PAT") - if (nzchar(Sys.which("curl")) && nzchar(pat)) { - fmt <- "--location --fail --header \"Authorization: token %s\"" - extra <- sprintf(fmt, pat) - saved <- options("download.file.method", "download.file.extra") - options(download.file.method = "curl", download.file.extra = extra) - on.exit(do.call(base::options, saved), add = TRUE) - } else if (nzchar(Sys.which("wget")) && nzchar(pat)) { - fmt <- "--header=\"Authorization: token %s\"" - extra <- sprintf(fmt, pat) - saved <- options("download.file.method", "download.file.extra") - options(download.file.method = "wget", download.file.extra = extra) - on.exit(do.call(base::options, saved), add = TRUE) - } - - url <- file.path("https://api.github.com/repos/rstudio/renv/tarball", version) - name <- sprintf("renv_%s.tar.gz", version) - destfile <- file.path(tempdir(), name) - - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (!identical(status, 0L)) - return(FALSE) - - renv_bootstrap_download_augment(destfile) - - return(destfile) - - } - - # Add Sha to DESCRIPTION. This is stop gap until #890, after which we - # can use renv::install() to fully capture metadata. - renv_bootstrap_download_augment <- function(destfile) { - sha <- renv_bootstrap_git_extract_sha1_tar(destfile) - if (is.null(sha)) { - return() - } - - # Untar - tempdir <- tempfile("renv-github-") - on.exit(unlink(tempdir, recursive = TRUE), add = TRUE) - untar(destfile, exdir = tempdir) - pkgdir <- dir(tempdir, full.names = TRUE)[[1]] - - # Modify description - desc_path <- file.path(pkgdir, "DESCRIPTION") - desc_lines <- readLines(desc_path) - remotes_fields <- c( - "RemoteType: github", - "RemoteHost: api.github.com", - "RemoteRepo: renv", - "RemoteUsername: rstudio", - "RemotePkgRef: rstudio/renv", - paste("RemoteRef: ", sha), - paste("RemoteSha: ", sha) - ) - writeLines(c(desc_lines[desc_lines != ""], remotes_fields), con = desc_path) - - # Re-tar - local({ - old <- setwd(tempdir) - on.exit(setwd(old), add = TRUE) - - tar(destfile, compression = "gzip") - }) - invisible() - } - - # Extract the commit hash from a git archive. Git archives include the SHA1 - # hash as the comment field of the tarball pax extended header - # (see https://www.kernel.org/pub/software/scm/git/docs/git-archive.html) - # For GitHub archives this should be the first header after the default one - # (512 byte) header. - renv_bootstrap_git_extract_sha1_tar <- function(bundle) { - - # open the bundle for reading - # We use gzcon for everything because (from ?gzcon) - # > Reading from a connection which does not supply a ‘gzip’ magic - # > header is equivalent to reading from the original connection - conn <- gzcon(file(bundle, open = "rb", raw = TRUE)) - on.exit(close(conn)) - - # The default pax header is 512 bytes long and the first pax extended header - # with the comment should be 51 bytes long - # `52 comment=` (11 chars) + 40 byte SHA1 hash - len <- 0x200 + 0x33 - res <- rawToChar(readBin(conn, "raw", n = len)[0x201:len]) - - if (grepl("^52 comment=", res)) { - sub("52 comment=", "", res) - } else { - NULL - } - } - - renv_bootstrap_install <- function(version, tarball, library) { - - # attempt to install it into project library - dir.create(library, showWarnings = FALSE, recursive = TRUE) - output <- renv_bootstrap_install_impl(library, tarball) - - # check for successful install - status <- attr(output, "status") - if (is.null(status) || identical(status, 0L)) - return(status) - - # an error occurred; report it - header <- "installation of renv failed" - lines <- paste(rep.int("=", nchar(header)), collapse = "") - text <- paste(c(header, lines, output), collapse = "\n") - stop(text) - - } - - renv_bootstrap_install_impl <- function(library, tarball) { - - # invoke using system2 so we can capture and report output - bin <- R.home("bin") - exe <- if (Sys.info()[["sysname"]] == "Windows") "R.exe" else "R" - R <- file.path(bin, exe) - - args <- c( - "--vanilla", "CMD", "INSTALL", "--no-multiarch", - "-l", shQuote(path.expand(library)), - shQuote(path.expand(tarball)) - ) - - system2(R, args, stdout = TRUE, stderr = TRUE) - - } - - renv_bootstrap_platform_prefix <- function() { - - # construct version prefix - version <- paste(R.version$major, R.version$minor, sep = ".") - prefix <- paste("R", numeric_version(version)[1, 1:2], sep = "-") - - # include SVN revision for development versions of R - # (to avoid sharing platform-specific artefacts with released versions of R) - devel <- - identical(R.version[["status"]], "Under development (unstable)") || - identical(R.version[["nickname"]], "Unsuffered Consequences") - - if (devel) - prefix <- paste(prefix, R.version[["svn rev"]], sep = "-r") - - # build list of path components - components <- c(prefix, R.version$platform) - - # include prefix if provided by user - prefix <- renv_bootstrap_platform_prefix_impl() - if (!is.na(prefix) && nzchar(prefix)) - components <- c(prefix, components) - - # build prefix - paste(components, collapse = "/") - - } - - renv_bootstrap_platform_prefix_impl <- function() { - - # if an explicit prefix has been supplied, use it - prefix <- Sys.getenv("RENV_PATHS_PREFIX", unset = NA) - if (!is.na(prefix)) - return(prefix) - - # if the user has requested an automatic prefix, generate it - auto <- Sys.getenv("RENV_PATHS_PREFIX_AUTO", unset = NA) - if (auto %in% c("TRUE", "True", "true", "1")) - return(renv_bootstrap_platform_prefix_auto()) - - # empty string on failure - "" - - } - - renv_bootstrap_platform_prefix_auto <- function() { - - prefix <- tryCatch(renv_bootstrap_platform_os(), error = identity) - if (inherits(prefix, "error") || prefix %in% "unknown") { - - msg <- paste( - "failed to infer current operating system", - "please file a bug report at https://github.com/rstudio/renv/issues", - sep = "; " - ) - - warning(msg) - - } - - prefix - - } - - renv_bootstrap_platform_os <- function() { - - sysinfo <- Sys.info() - sysname <- sysinfo[["sysname"]] - - # handle Windows + macOS up front - if (sysname == "Windows") - return("windows") - else if (sysname == "Darwin") - return("macos") - - # check for os-release files - for (file in c("/etc/os-release", "/usr/lib/os-release")) - if (file.exists(file)) - return(renv_bootstrap_platform_os_via_os_release(file, sysinfo)) - - # check for redhat-release files - if (file.exists("/etc/redhat-release")) - return(renv_bootstrap_platform_os_via_redhat_release()) - - "unknown" - - } - - renv_bootstrap_platform_os_via_os_release <- function(file, sysinfo) { - - # read /etc/os-release - release <- utils::read.table( - file = file, - sep = "=", - quote = c("\"", "'"), - col.names = c("Key", "Value"), - comment.char = "#", - stringsAsFactors = FALSE - ) - - vars <- as.list(release$Value) - names(vars) <- release$Key - - # get os name - os <- tolower(sysinfo[["sysname"]]) - - # read id - id <- "unknown" - for (field in c("ID", "ID_LIKE")) { - if (field %in% names(vars) && nzchar(vars[[field]])) { - id <- vars[[field]] - break - } - } - - # read version - version <- "unknown" - for (field in c("UBUNTU_CODENAME", "VERSION_CODENAME", "VERSION_ID", "BUILD_ID")) { - if (field %in% names(vars) && nzchar(vars[[field]])) { - version <- vars[[field]] - break - } - } - - # join together - paste(c(os, id, version), collapse = "-") - - } - - renv_bootstrap_platform_os_via_redhat_release <- function() { - - # read /etc/redhat-release - contents <- readLines("/etc/redhat-release", warn = FALSE) - - # infer id - id <- if (grepl("centos", contents, ignore.case = TRUE)) - "centos" - else if (grepl("redhat", contents, ignore.case = TRUE)) - "redhat" - else - "unknown" - - # try to find a version component (very hacky) - version <- "unknown" - - parts <- strsplit(contents, "[[:space:]]")[[1L]] - for (part in parts) { - - nv <- tryCatch(numeric_version(part), error = identity) - if (inherits(nv, "error")) - next - - version <- nv[1, 1] - break - - } - - paste(c("linux", id, version), collapse = "-") - - } - - renv_bootstrap_library_root_name <- function(project) { - - # use project name as-is if requested - asis <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT_ASIS", unset = "FALSE") - if (asis) - return(basename(project)) - - # otherwise, disambiguate based on project's path - id <- substring(renv_bootstrap_hash_text(project), 1L, 8L) - paste(basename(project), id, sep = "-") - - } - - renv_bootstrap_library_root <- function(project) { - - prefix <- renv_bootstrap_profile_prefix() - - path <- Sys.getenv("RENV_PATHS_LIBRARY", unset = NA) - if (!is.na(path)) - return(paste(c(path, prefix), collapse = "/")) - - path <- renv_bootstrap_library_root_impl(project) - if (!is.null(path)) { - name <- renv_bootstrap_library_root_name(project) - return(paste(c(path, prefix, name), collapse = "/")) - } - - renv_bootstrap_paths_renv("library", project = project) - - } - - renv_bootstrap_library_root_impl <- function(project) { - - root <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT", unset = NA) - if (!is.na(root)) - return(root) - - type <- renv_bootstrap_project_type(project) - if (identical(type, "package")) { - userdir <- renv_bootstrap_user_dir() - return(file.path(userdir, "library")) - } - - } - - renv_bootstrap_validate_version <- function(version, description = NULL) { - - # resolve description file - description <- description %||% { - path <- getNamespaceInfo("renv", "path") - packageDescription("renv", lib.loc = dirname(path)) - } - - # check whether requested version 'version' matches loaded version of renv - sha <- attr(version, "sha", exact = TRUE) - valid <- if (!is.null(sha)) - renv_bootstrap_validate_version_dev(sha, description) - else - renv_bootstrap_validate_version_release(version, description) - - if (valid) - return(TRUE) - - # the loaded version of renv doesn't match the requested version; - # give the user instructions on how to proceed - remote <- if (!is.null(description[["RemoteSha"]])) { - paste("rstudio/renv", description[["RemoteSha"]], sep = "@") - } else { - paste("renv", description[["Version"]], sep = "@") - } - - # display both loaded version + sha if available - friendly <- renv_bootstrap_version_friendly( - version = description[["Version"]], - sha = description[["RemoteSha"]] - ) - - fmt <- paste( - "renv %1$s was loaded from project library, but this project is configured to use renv %2$s.", - "- Use `renv::record(\"%3$s\")` to record renv %1$s in the lockfile.", - "- Use `renv::restore(packages = \"renv\")` to install renv %2$s into the project library.", - sep = "\n" - ) - catf(fmt, friendly, renv_bootstrap_version_friendly(version), remote) - - FALSE - - } - - renv_bootstrap_validate_version_dev <- function(version, description) { - expected <- description[["RemoteSha"]] - is.character(expected) && startswith(expected, version) - } - - renv_bootstrap_validate_version_release <- function(version, description) { - expected <- description[["Version"]] - is.character(expected) && identical(expected, version) - } - - renv_bootstrap_hash_text <- function(text) { - - hashfile <- tempfile("renv-hash-") - on.exit(unlink(hashfile), add = TRUE) - - writeLines(text, con = hashfile) - tools::md5sum(hashfile) - - } - - renv_bootstrap_load <- function(project, libpath, version) { - - # try to load renv from the project library - if (!requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) - return(FALSE) - - # warn if the version of renv loaded does not match - renv_bootstrap_validate_version(version) - - # execute renv load hooks, if any - hooks <- getHook("renv::autoload") - for (hook in hooks) - if (is.function(hook)) - tryCatch(hook(), error = warning) - - # load the project - renv::load(project) - - TRUE - - } - - renv_bootstrap_profile_load <- function(project) { - - # if RENV_PROFILE is already set, just use that - profile <- Sys.getenv("RENV_PROFILE", unset = NA) - if (!is.na(profile) && nzchar(profile)) - return(profile) - - # check for a profile file (nothing to do if it doesn't exist) - path <- renv_bootstrap_paths_renv("profile", profile = FALSE, project = project) - if (!file.exists(path)) - return(NULL) - - # read the profile, and set it if it exists - contents <- readLines(path, warn = FALSE) - if (length(contents) == 0L) - return(NULL) - - # set RENV_PROFILE - profile <- contents[[1L]] - if (!profile %in% c("", "default")) - Sys.setenv(RENV_PROFILE = profile) - - profile - - } - - renv_bootstrap_profile_prefix <- function() { - profile <- renv_bootstrap_profile_get() - if (!is.null(profile)) - return(file.path("profiles", profile, "renv")) - } - - renv_bootstrap_profile_get <- function() { - profile <- Sys.getenv("RENV_PROFILE", unset = "") - renv_bootstrap_profile_normalize(profile) - } - - renv_bootstrap_profile_set <- function(profile) { - profile <- renv_bootstrap_profile_normalize(profile) - if (is.null(profile)) - Sys.unsetenv("RENV_PROFILE") - else - Sys.setenv(RENV_PROFILE = profile) - } - - renv_bootstrap_profile_normalize <- function(profile) { - - if (is.null(profile) || profile %in% c("", "default")) - return(NULL) - - profile - - } - - renv_bootstrap_path_absolute <- function(path) { - - substr(path, 1L, 1L) %in% c("~", "/", "\\") || ( - substr(path, 1L, 1L) %in% c(letters, LETTERS) && - substr(path, 2L, 3L) %in% c(":/", ":\\") - ) - - } - - renv_bootstrap_paths_renv <- function(..., profile = TRUE, project = NULL) { - renv <- Sys.getenv("RENV_PATHS_RENV", unset = "renv") - root <- if (renv_bootstrap_path_absolute(renv)) NULL else project - prefix <- if (profile) renv_bootstrap_profile_prefix() - components <- c(root, renv, prefix, ...) - paste(components, collapse = "/") - } - - renv_bootstrap_project_type <- function(path) { - - descpath <- file.path(path, "DESCRIPTION") - if (!file.exists(descpath)) - return("unknown") - - desc <- tryCatch( - read.dcf(descpath, all = TRUE), - error = identity - ) - - if (inherits(desc, "error")) - return("unknown") - - type <- desc$Type - if (!is.null(type)) - return(tolower(type)) - - package <- desc$Package - if (!is.null(package)) - return("package") - - "unknown" - - } - - renv_bootstrap_user_dir <- function() { - dir <- renv_bootstrap_user_dir_impl() - path.expand(chartr("\\", "/", dir)) - } - - renv_bootstrap_user_dir_impl <- function() { - - # use local override if set - override <- getOption("renv.userdir.override") - if (!is.null(override)) - return(override) - - # use R_user_dir if available - tools <- asNamespace("tools") - if (is.function(tools$R_user_dir)) - return(tools$R_user_dir("renv", "cache")) - - # try using our own backfill for older versions of R - envvars <- c("R_USER_CACHE_DIR", "XDG_CACHE_HOME") - for (envvar in envvars) { - root <- Sys.getenv(envvar, unset = NA) - if (!is.na(root)) - return(file.path(root, "R/renv")) - } - - # use platform-specific default fallbacks - if (Sys.info()[["sysname"]] == "Windows") - file.path(Sys.getenv("LOCALAPPDATA"), "R/cache/R/renv") - else if (Sys.info()[["sysname"]] == "Darwin") - "~/Library/Caches/org.R-project.R/R/renv" - else - "~/.cache/R/renv" - - } - - renv_bootstrap_version_friendly <- function(version, sha = NULL) { - sha <- sha %||% attr(version, "sha", exact = TRUE) - parts <- c(version, sprintf("[sha: %s]", substring(sha, 1L, 7L))) - paste(parts, collapse = " ") - } - - renv_bootstrap_run <- function(version, libpath) { - - # perform bootstrap - bootstrap(version, libpath) - - # exit early if we're just testing bootstrap - if (!is.na(Sys.getenv("RENV_BOOTSTRAP_INSTALL_ONLY", unset = NA))) - return(TRUE) - - # try again to load - if (requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) { - return(renv::load(project = getwd())) - } - - # failed to download or load renv; warn the user - msg <- c( - "Failed to find an renv installation: the project will not be loaded.", - "Use `renv::activate()` to re-initialize the project." - ) - - warning(paste(msg, collapse = "\n"), call. = FALSE) - - } - - - renv_bootstrap_in_rstudio <- function() { - commandArgs()[[1]] == "RStudio" - } - - renv_json_read <- function(file = NULL, text = NULL) { - - jlerr <- NULL - - # if jsonlite is loaded, use that instead - if ("jsonlite" %in% loadedNamespaces()) { - - json <- catch(renv_json_read_jsonlite(file, text)) - if (!inherits(json, "error")) - return(json) - - jlerr <- json - - } - - # otherwise, fall back to the default JSON reader - json <- catch(renv_json_read_default(file, text)) - if (!inherits(json, "error")) - return(json) - - # report an error - if (!is.null(jlerr)) - stop(jlerr) - else - stop(json) - - } - - renv_json_read_jsonlite <- function(file = NULL, text = NULL) { - text <- paste(text %||% read(file), collapse = "\n") - jsonlite::fromJSON(txt = text, simplifyVector = FALSE) - } - - renv_json_read_default <- function(file = NULL, text = NULL) { - - # find strings in the JSON - text <- paste(text %||% read(file), collapse = "\n") - pattern <- '["](?:(?:\\\\.)|(?:[^"\\\\]))*?["]' - locs <- gregexpr(pattern, text, perl = TRUE)[[1]] - - # if any are found, replace them with placeholders - replaced <- text - strings <- character() - replacements <- character() - - if (!identical(c(locs), -1L)) { - - # get the string values - starts <- locs - ends <- locs + attr(locs, "match.length") - 1L - strings <- substring(text, starts, ends) - - # only keep those requiring escaping - strings <- grep("[[\\]{}:]", strings, perl = TRUE, value = TRUE) - - # compute replacements - replacements <- sprintf('"\032%i\032"', seq_along(strings)) - - # replace the strings - mapply(function(string, replacement) { - replaced <<- sub(string, replacement, replaced, fixed = TRUE) - }, strings, replacements) - - } - - # transform the JSON into something the R parser understands - transformed <- replaced - transformed <- gsub("{}", "`names<-`(list(), character())", transformed, fixed = TRUE) - transformed <- gsub("[[{]", "list(", transformed, perl = TRUE) - transformed <- gsub("[]}]", ")", transformed, perl = TRUE) - transformed <- gsub(":", "=", transformed, fixed = TRUE) - text <- paste(transformed, collapse = "\n") - - # parse it - json <- parse(text = text, keep.source = FALSE, srcfile = NULL)[[1L]] - - # construct map between source strings, replaced strings - map <- as.character(parse(text = strings)) - names(map) <- as.character(parse(text = replacements)) - - # convert to list - map <- as.list(map) - - # remap strings in object - remapped <- renv_json_remap(json, map) - - # evaluate - eval(remapped, envir = baseenv()) - - } - - renv_json_remap <- function(json, map) { - - # fix names - if (!is.null(names(json))) { - lhs <- match(names(json), names(map), nomatch = 0L) - rhs <- match(names(map), names(json), nomatch = 0L) - names(json)[rhs] <- map[lhs] - } - - # fix values - if (is.character(json)) - return(map[[json]] %||% json) - - # handle true, false, null - if (is.name(json)) { - text <- as.character(json) - if (text == "true") - return(TRUE) - else if (text == "false") - return(FALSE) - else if (text == "null") - return(NULL) - } - - # recurse - if (is.recursive(json)) { - for (i in seq_along(json)) { - json[i] <- list(renv_json_remap(json[[i]], map)) - } - } - - json - - } - - # load the renv profile, if any - renv_bootstrap_profile_load(project) - - # construct path to library root - root <- renv_bootstrap_library_root(project) - - # construct library prefix for platform - prefix <- renv_bootstrap_platform_prefix() - - # construct full libpath - libpath <- file.path(root, prefix) - - # attempt to load - if (renv_bootstrap_load(project, libpath, version)) - return(TRUE) - - if (renv_bootstrap_in_rstudio()) { - setHook("rstudio.sessionInit", function(...) { - renv_bootstrap_run(version, libpath) - - # Work around buglet in RStudio if hook uses readline - tryCatch( - { - tools <- as.environment("tools:rstudio") - tools$.rs.api.sendToConsole("", echo = FALSE, focus = FALSE) - }, - error = function(cnd) {} - ) - }) - } else { - renv_bootstrap_run(version, libpath) - } - - invisible() - -}) diff --git a/crossbow-nightly-report/renv/settings.json b/crossbow-nightly-report/renv/settings.json deleted file mode 100644 index ffdbb3200f7..00000000000 --- a/crossbow-nightly-report/renv/settings.json +++ /dev/null @@ -1,19 +0,0 @@ -{ - "bioconductor.version": null, - "external.libraries": [], - "ignored.packages": [], - "package.dependency.fields": [ - "Imports", - "Depends", - "LinkingTo" - ], - "ppm.enabled": null, - "ppm.ignored.urls": [], - "r.version": null, - "snapshot.type": "implicit", - "use.cache": true, - "vcs.ignore.cellar": true, - "vcs.ignore.library": true, - "vcs.ignore.local": true, - "vcs.manage.ignores": true -} diff --git a/csv_reports/nightly-packaging-2022-05-12-0.csv b/csv_reports/nightly-packaging-2022-05-12-0.csv deleted file mode 100644 index 70b0e799c85..00000000000 --- a/csv_reports/nightly-packaging-2022-05-12-0.csv +++ /dev/null @@ -1,88 +0,0 @@ -task_name,task_status,build_links,crossbow_branch_url,ci_system,extra_params,template,arrow_commit 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tibble of runs (or an empty tibble if no runs were found) - -find_runs <- function(baseline_git_commit, contender_git_commit, hardware_name) { - runs_raw <- conbenchcoms::runs(c(baseline_git_commit, contender_git_commit)) - if (length(runs_raw) == 0) { - message("This combination of commits did not return any runs.") - return(invisible(tibble::tibble())) - } - - runs_raw %>% - dplyr::filter(hardware.name %in% hardware_name) %>% - dplyr::mutate(run_type = case_when( - commit.sha == contender_git_commit ~ "contender", - commit.sha == baseline_git_commit ~ "baseline" - )) %>% - dplyr::mutate(dplyr::across(dplyr::starts_with("links"), conbenchcoms::url_cleaner)) -} - -#' A wrapper around conbenchcoms::compare() which looks for -#' contender and baseline runs in the given data frame -compare_baseline_to_contender <- function(.data) { - compare( - type = "runs", - .data$id[.data$run_type == "baseline"], - .data$id[.data$run_type == "contender"], - simplifyVector = TRUE - ) %>% - as_tibble() -} - - -#' helper function to get the language summary from a comparison -get_language_summary_from_comparison <- function(.data) { - Reduce(bind_rows, .data[c("baseline", "contender")]) %>% - filter(!is.na(language)) %>% - mutate( - benchmark_type = case_when( - language %in% c("R", "Python") ~ "[macrobenchmarks](#macro-bm)", - language %in% c("C++", "Java", "JavaScript") ~ "[microbenchmarks](#micro-bm)", - ) - ) %>% - summarise( - languages = paste(unique(language), collapse = ", "), - n_benchmarks = length(benchmark_name), - .by = c(run_id, benchmark_type) - ) -} - - - - -#' Detect if we are on GitHub Actions -is_gha <- function() { - Sys.getenv("GITHUB_ACTIONS") == "true" -} - - -plot_comparison <- function(plot_df, alpha = 0.7) { - - ## Can be a uri as well - plot_df <- plot_df %>% - mutate(dataset = case_when( - is.na(dataset) ~ dataset_uri, - TRUE ~ dataset - )) - - tag_names <- unlist(plot_df$tags_used) - x_facets <- c("compression", "format", "file_type", "use_legacy_dataset") - # TODO: add others? - x_facets <- x_facets[x_facets %in% tag_names] - - y_facets <- c("output_type", "input_type", "streaming", "pre_buffer", "async", "selectivity", "scale_factor") - y_facets <- y_facets[y_facets %in% tag_names] - - maybe_vars <- function(variables) { - if (length(variables) == 0) { - return(NULL) - } - - vars(!!!syms(variables)) - } - - title <- glue::glue("{unique(plot_df$language)}: {unique(plot_df$benchmark_name)}") - p <- plot_df %>% - mutate(change_lab = change * 1.05) %>% - ggplot() + - aes(y = forcats::fct_reorder(dataset, pn_lab, .desc = TRUE), x = change, fill = pn_lab) + - geom_col_interactive( - aes( - tooltip = glue( - "Baseline result: {baseline.single_value_summary}{unit}\n", - "Contender result: {contender.single_value_summary}{unit}\n", - "Difference: {difference}\n", - "Percent change: {round(change, 2)}%\n", - "Dataset: {dataset}" - ) - ), - position = "dodge", alpha = 0.75, width = 0.75, colour = "grey 40" - ) + - geom_vline(xintercept = 0, colour = "grey50") + - geom_text(aes(x = change_lab, hjust = ifelse(change >= 0, 0, 1), label = difference, colour = pn_lab), size = 6) + - facet_grid(rows = maybe_vars(x_facets), cols = maybe_vars(y_facets), labeller = label_both) + - scale_fill_manual(values = change_cols) + - scale_colour_manual(values = change_cols) + - scale_x_continuous(expand = expansion(mult = 0.6)) + - guides(colour = "none") + - ylab("Dataset") + - xlab("% change") - - ## Some height adjustments - g_heights <- 6 - g_widths <- 16 - - if (length(x_facets) > 0) { - g_heights <- g_heights*(n_distinct(plot_df[, x_facets, drop = TRUE])/1.25) - } - girafe( - ggobj = p, - options = list( - opts_tooltip(use_fill = TRUE), - opts_sizing(width = .7) - ), - width_svg = g_widths, - height_svg = g_heights - ) -} - -#' Take a language and benchmark name combo and return a processed tibble -#' with some relevant columns brought to the top level -#' @param .x language -#' @param .y benchmark name -#' @return tibble -tidy_compare <- function(.x, .y) { - tags <- .x$baseline_tags[colSums(!is.na(.x$baseline_tags)) > 0] - - if (length(unique(tags$name)) > 1) { - browser() - } - - tag_names <- colnames(tags) - tag_names <- tag_names[!tag_names %in% c("name", "query_id", "language", "engine", "memory_map", "query", "async")] - - plot_df <- .x %>% - jsonlite::flatten() %>% - as_tibble() %>% - select(-any_of(c("baseline_tags.dataset", "baseline_tags.language"))) %>% - rename_with(~ gsub("baseline_tags.", "", .)) %>% - mutate(change = analysis.pairwise.percent_change) %>% - mutate(difference = paste0(round((baseline.single_value_summary - contender.single_value_summary), 4), "", unit)) %>% - mutate(cb_url = glue('https://conbench.ursa.dev/benchmark-results/{baseline.benchmark_result_id}/')) %>% - mutate( - pn_lab = case_when( - analysis.pairwise.percent_change == 0 ~ "no change", - analysis.pairwise.percent_change > 0 ~ paste0(contender_git_commit_short, " (contender) faster"), - analysis.pairwise.percent_change < 0 ~ paste0(baseline_git_commit_short, " (baseline) faster") - ) - ) %>% - mutate( - tags_used = list(tag_names), - language = .y$`baseline$language`, - benchmark_name = .y$`baseline$benchmark_name` - ) -} - - -generate_compare_url <- function(x) { - baseline_id <- unique(x$baseline$run_id) - baseline_id <- baseline_id[!is.na(baseline_id)] - contender_id <- unique(x$contender$run_id) - contender_id <- contender_id[!is.na(contender_id)] - - glue("https://conbench.ursa.dev/compare/runs/{contender_id}...{baseline_id}") -} - - -top_zscore_table <- function(.data, top_n = 20, direction = c("improvement", "regression")) { - - direction <- match.arg(direction) - - if (direction == "improvement") { - .data <- .data %>% - arrange(desc(analysis_lookback_z_score_z_score)) - } else { - .data <- .data %>% - arrange(analysis_lookback_z_score_z_score) - } - - ## let's convert things to megabytes - .data <- .data %>% - mutate(across(ends_with("single_value_summary"), ~ case_when( - unit == "B/s" ~ .x/1000000, ## B/s -> MB/s - TRUE ~ .x - ))) %>% - mutate(unit = case_when( - unit == "B/s" ~ "MB/s", - TRUE ~ unit - )) - - .data %>% - head(top_n) %>% - mutate(name = glue("[{name}]({cb_url})")) %>% - select( - language, suite, name, params, analysis_lookback_z_score_z_score, analysis_pairwise_percent_change, baseline_single_value_summary, contender_single_value_summary, unit) %>% - arrange(language, suite, name, params) %>% - gt(rowname_col = "language", groupname_col = "suite") %>% - fmt_markdown(columns = "name") %>% - fmt_percent(columns = "analysis_pairwise_percent_change", decimals = 0) %>% - fmt_number(columns = ends_with("single_value_summary"), decimals = 0) %>% - fmt_number(columns = "analysis_lookback_z_score_z_score", decimals = 2) %>% - cols_label( - language = "Language", - name = "Benchmark", - suite = "Suite", - params = "Params", - baseline_single_value_summary = "Baseline result", - contender_single_value_summary = "Contender result", - analysis_pairwise_percent_change = "Percent Change", - analysis_lookback_z_score_z_score = "z-score" - ) %>% - tab_spanner(columns = c("baseline_single_value_summary", "contender_single_value_summary", "unit"), label= "Results") %>% - tab_spanner(columns = starts_with("analysis_"), label= "Analysis") %>% - opt_table_font(font = google_font("Roboto Mono")) %>% - tab_options(table.font.size = "10px") %>% - tab_footnote( - footnote = "MB/s = megabytes per second; ns = nanoseconds; i/s = iterations per second", - locations = cells_body(columns = "unit") - ) -} \ No newline at end of file diff --git a/performance-release-report/performance-release-report.qmd b/performance-release-report/performance-release-report.qmd deleted file mode 100644 index 14eec172e02..00000000000 --- a/performance-release-report/performance-release-report.qmd +++ /dev/null @@ -1,608 +0,0 @@ ---- -title: "Arrow Release Benchmark Report" -execute: - warning: false - echo: false -format: - html: - grid: - sidebar-width: 0px - body-width: 2000px - margin-width: 340px - gutter-width: 1.5rem - self-contained: true - page-layout: full - toc: true - toc-title: "Contents" - toc-depth: 3 - margin-left: 30px - link-external-newwindow: true - theme: cosmo ---- - - -```{r setup} -#| include: false - -Sys.unsetenv("CONBENCH_PASSWORD") - - -baseline_git_commit <- Sys.getenv("BASELINE_GIT_COMMIT") -contender_git_commit <- Sys.getenv("CONTENDER_GIT_COMMIT") -# baseline_git_commit <- '5bf86ab4d9e9bc5bb7e1c6e65a55d9f1723597bf' -# contender_git_commit <- 'b7d2f7ffca66c868bd2fce5b3749c6caa002a7f0' -hardware_name <- c("ursa-i9-9960x", "ursa-thinkcentre-m75q") - -library(dplyr) -library(ggplot2) -library(tidyr) -library(glue) -library(purrr) -library(conbenchcoms) -library(cli) -library(lubridate) -library(knitr) -library(gt) -library(forcats) -library(showtext) -library(ggiraph) -library(janitor) - -## add fonts for ggplot2 -## TODO: add for tooltip font -font_add_google('Roboto Mono', 'roboto') -showtext_auto() - -fig_width <- 16 -fig_height <- 7 - -## tweaks to theme -theme_set(theme_minimal(base_size = 24, base_family = "roboto") %+replace% - theme( - plot.title.position = "plot", - strip.text.y = element_text(angle = -90), - strip.text = element_text(size = 18), - panel.border = element_rect(colour = "grey80", fill = NA, linewidth = 1), - legend.title = element_blank(), - legend.position = "top" - )) - -opts_chunk$set( - cache = FALSE, - echo = FALSE - ) - -baseline_git_commit_short <- substr(baseline_git_commit, 1, 7) -contender_git_commit_short <- substr(contender_git_commit, 1, 7) - -source("R/functions.R") -``` - -```{r warn-gha} -if (!is_gha()) { - message("When run locally, this report will cache results to avoid re-running benchmarks. -To see the most up-to-date results, please run this report on GitHub Actions or delete the cache.") -} -``` - - -```{r warn-commits-not-set} -if (!nzchar(baseline_git_commit) | !nzchar(contender_git_commit)) { - knit_exit("Please set the BASELINE_GIT_COMMIT & CONTENDER_GIT_COMMIT environment variables to the commit hash of the baseline and the release.") -} -``` - -```{r compute-conbench-requests} -#| include: false -#| results: 'asis' -#| cache: !expr '!is_gha()' - -run_comp <- find_runs(baseline_git_commit, contender_git_commit, hardware_name) - -if (length(run_comp) == 0) { - knit_exit("No runs found for the given commits. Please check that the commits are correct and that the benchmark runs have completed.") -} - -# Compare the baseline to the contender for -# macrobenchmarks -ursa_i9_bm <- run_comp %>% - filter(hardware.name == "ursa-i9-9960x") %>% - compare_baseline_to_contender() - -macro_bm_df <- ursa_i9_bm %>% - filter(baseline$language %in% c("Python", "R")) - -# microbenchmarks -micro_bm_df <- run_comp %>% - filter(hardware.name == "ursa-thinkcentre-m75q") %>% - compare_baseline_to_contender() %>% - bind_rows(ursa_i9_bm %>% filter(baseline$language %in% "JavaScript")) -``` - - -```{r message-missing-hardware} -#| results: 'asis' - -## extract hardware information -hardware_summary <- run_comp %>% - mutate(commit.timestamp = ymd_hms(commit.timestamp)) %>% - mutate(links.self = glue("https://conbench.ursa.dev/runs/{id}")) %>% - distinct(run_type, links.self, commit.sha, commit.timestamp, commit.url, hardware.cpu_model_name, id) - -if (nrow(hardware_summary) != 2L*length(hardware_name)) { - ## fail early and informatively with when not using correct hardware - missing_commits <- setdiff(c(contender_git_commit, baseline_git_commit), unique(hardware_summary$commit.sha)[1]) - cat(pluralize("Commits {missing_commits} w{?as/ere} not benchmarked with {glue_collapse(hardware_name, last = ' & ')} hardware.")) - knit_exit() -} -``` - - - -# Benchmark Run Summary -```{r table-run-summary} - -## get additional information about the benchmarks -benchmark_summary <- map_df(list(macro_bm_df, micro_bm_df), get_language_summary_from_comparison) - - -run_summary <- hardware_summary %>% - left_join( ## join on run_id - benchmark_summary, - by = c("id" = "run_id") - ) %>% - mutate( - commit.sha = glue("[{substr(commit.sha, 1, 7)}]({commit.url})"), - run_type = glue("[{run_type}]({links.self})"), - commit.timestamp = ymd_hms(commit.timestamp) - ) %>% - select(run_type, commit.sha, commit.timestamp, hardware.cpu_model_name, languages, benchmark_type, n_benchmarks) %>% - arrange(benchmark_type, hardware.cpu_model_name) - -run_summary %>% - gt() %>% - fmt_markdown(c("commit.sha", "run_type", "benchmark_type")) %>% - gt::cols_label( - run_type = "Run Type", - commit.sha = "Commit SHA", - commit.timestamp = "Time of Commit", - hardware.cpu_model_name = "Hardware", - languages = "Languages", - benchmark_type = "Benchmark Type", - n_benchmarks = "Number of Benchmarks" - ) %>% - tab_footnote( - "When we compare benchmark results, we always have a contender (the new code that we are considering) and a baseline (the old code that were are comparing to). The historic distribution will be drawn from all benchmark results on commits in the baseline commit's git ancestry, up to and including all runs on the baseline commit itself. In this context, a baseline is typically the last Arrow release and the contender is the current release candidate.", - locations = cells_column_labels(columns = "run_type") - ) %>% - opt_table_font(font = google_font("Roboto Mono")) -``` - -```{r message-same-day-commit} -#| results: 'asis' - -if (Sys.Date() %in% unique(as.Date(hardware_summary$commit.timestamp))) { - ## inform early and informatively with when not using correct hardware - cat("::: {.callout-warning}\n") - cat("You are trying to examine commits that were made today. It is possible that not all benchmarks have been completed yet and plots below may show unexpected results.\n") - cat(":::\n") -} -``` - -# Macrobenchmarks {#macro-bm} - - - -```{r function-plots} -#| include: false - -change_cols <- viridisLite::mako(2, begin = 0.5, end = 0.75) -names(change_cols) <- c(glue("{contender_git_commit_short} (contender) faster"), glue("{baseline_git_commit_short} (baseline) faster")) -``` - - -```{r compute-process-macro-bm-data} -#| results: 'asis' - -macro_bm_proced <- macro_bm_df %>% - # csv-read had very different kinds of runs - filter(baseline$benchmark_name != "csv-read") %>% - # Remove the "TPCH-" prefix and any 0 at the start of the number - mutate(baseline_tags = mutate(baseline$tags, query_id = gsub("^0", "", gsub("TPCH-", "", query_id)))) %>% - mutate(dataset = case_when( - baseline$benchmark_name == "tpch" ~ glue("Query id: {baseline_tags$query_id}"), - baseline$benchmark_name == "wide-dataframe" ~ "wide-dataframe", - baseline$benchmark_name == "partitioned-dataset-filter" ~ glue("{baseline$benchmark_name}: {baseline_tags$query} query"), - TRUE ~ baseline_tags$dataset - )) %>% - group_by(baseline$language, baseline$benchmark_name) %>% - group_map(~ tidy_compare(.x, .y)) - -macro_bm_list <- list() -for (i in seq_len(length(macro_bm_proced))) { - one_conbench <- macro_bm_proced[[i]] - lang <- unique(one_conbench$language) - benchmark_name <- unique(one_conbench$benchmark_name) - macro_bm_list[[lang]][[benchmark_name]] <- one_conbench -} - -tpch_data <- macro_bm_list[["R"]][["tpch"]] - -macro_bm_list[["R"]][which(names(macro_bm_list[["R"]]) %in% c("tpch"))] <- NULL -``` - -Live Conbench UI views for the macrobenchmarks are available at this [url](`r generate_compare_url(macro_bm_df)`). Conbench is an additional method to explore the results of the benchmarks particularly if you want to see results from more of the history or see more metadata. - -## Benchmark Percent Changes - -- Benchmarks are plotted using the percent change from baseline to contender. -- Additional information on each benchmark is available by hovering over the relevant bar. - -## Python -```{r plot-python} -#| echo: FALSE -#| results: 'asis' -#| warning: FALSE - -#names(macro_bm_list) -lang <- "Python" - -bm_names <- names(macro_bm_list[[lang]]) -bm_names <- bm_names[!bm_names %in% c("dataset-serialize")] ## dropping dataset-serialize for now - -python_plots <- map_chr(bm_names, \(bm_name) { - knit_child( - text = c( - glue("```{r plot-<>-<>}", .open = "<<", .close = ">>"), - "#| results: 'asis'", - 'cat("###", bm_name, "\n")', - "plot_comparison(macro_bm_list[[lang]][[bm_name]])", - "```" - ), - envir = environment(), - quiet = TRUE - ) -}) - -cat(python_plots, sep = "\n") -``` - - -## R -```{r plot-r} -#| echo: FALSE -#| results: 'asis' -#| warning: FALSE - -lang <- "R" -r_plots <- map_chr(names(macro_bm_list[[lang]]), \(bm_name) { - knit_child( - text = c( - glue("```{r plot-<>-<>}", .open = "<<", .close = ">>"), - "#| results: 'asis'", - 'cat("###", bm_name, "\n")', - "plot_comparison(macro_bm_list[[lang]][[bm_name]])", - "```" - ), - envir = environment(), - quiet = TRUE - ) -}) - -cat(r_plots, sep = "\n") -``` - -### tpch -```{r plot-tpch} -#| echo: FALSE -#| results: 'asis' -#| warning: FALSE - -tpch_p <- tpch_data %>% - mutate(change_lab = change * 1.05) %>% - mutate(query_id = as.numeric(query_id)) %>% - ggplot() + - aes(y = fct_reorder(dataset, query_id, .desc = TRUE), x = change, fill = pn_lab) + - geom_col_interactive( - aes( - tooltip = glue( - "Percent change: {round(change, 2)}%\n", - "Difference: {difference}\n", - "Dataset: {dataset}" - ) - ), - position = "dodge", alpha = 0.75 - ) + - geom_text(aes(x = change_lab, hjust = ifelse(change >= 0, 0, 1), label = difference, colour = pn_lab), size = 7) + - geom_vline(xintercept = 0, colour = "grey80") + - facet_grid(rows = vars(format), cols = vars(scale_factor), labeller = label_both) + - scale_fill_manual(values = change_cols) + - scale_colour_manual(values = change_cols) + - scale_x_continuous(expand = expansion(mult = 0.6)) + - guides(colour = "none") + - ylab("Dataset") + - xlab("% change") - -girafe( - ggobj = tpch_p, - options = list( - opts_tooltip(use_fill = TRUE), - opts_sizing(width = .7) - ), - width_svg = 16, - height_svg = 20 -) -``` - - -# Microbenchmarks {#micro-bm} - -```{r compute-process-micro-bm-data} - - -## unlike the plots above, this is added as single rectangular -## data.frame because that data structure is easier to work with -## using arquero -micro_bm_proced <- micro_bm_df %>% - mutate(baseline_tags = baseline$tags) %>% - group_by(baseline$language, baseline$benchmark_name) %>% - group_modify(~ tidy_compare(.x, .y)) %>% - ungroup() %>% - filter(!is.na(name)) %>% - filter(!is.na(analysis.lookback_z_score.regression_indicated)) %>% ## indicator of some empty data - ## this will enable the yaxis to be populated with names when params is NA. params is preferable because it is more specific - mutate(params = ifelse(is.na(params), baseline.case_permutation, params)) %>% - rowwise() %>% - mutate(params = paste(strwrap(params, 10), collapse="\n")) %>% - clean_names() %>% - select(language, baseline_benchmark_name, name, params, suite, analysis_pairwise_regression_indicated, analysis_pairwise_improvement_indicated, change, difference, pn_lab, analysis_lookback_z_score_z_score, analysis_lookback_z_score_z_threshold, analysis_pairwise_percent_change, baseline_single_value_summary, contender_single_value_summary, cb_url, unit) -``` - -There are currently `r nrow(micro_bm_proced)` microbenchmarks in the Arrow benchmarks. The following comparisons are also available to be viewed in the [Conbench UI](`r generate_compare_url(micro_bm_df)`). - -```{r table-micro-bm-summary} -threshold <- unique(micro_bm_proced$analysis_lookback_z_score_z_threshold) -threshold <- threshold[!is.na(threshold)] -micro_bm_proced %>% - count(language, analysis_pairwise_regression_indicated, analysis_pairwise_improvement_indicated) %>% - mutate(col_var = case_when( - analysis_pairwise_regression_indicated == TRUE ~ "Regressions", - analysis_pairwise_improvement_indicated == TRUE ~ "Improvements", - TRUE ~ "Stable" - )) %>% - select(-all_of(starts_with("analysis_pairwise"))) %>% - pivot_wider(names_from = col_var, values_from = n) %>% - rowwise() %>% - mutate(Total = sum(c_across(c(Stable, Improvements, Regressions)))) %>% - mutate(`z-score threshold` = threshold, .after = language) %>% - gt() %>% - cols_label(language = "Language") %>% - tab_spanner( - label = "Number of microbenchmarks", - columns = c(Stable, Improvements, Regressions, Total) - ) %>% - opt_table_font(font = google_font("Roboto Mono")) -``` - -Because of the large number of benchmarks, the top 20 benchmark results that deviate most from the baseline in both the positive and negative directions are presented below. _All_ microbenchmark results for this comparison can be explored interactively in the [microbenchmark explorer](#micro-bm-explorer). - -::: {.callout-important collapse="true"} - -## Largest 20 regressions between baseline and contender - -```{r table-top-zscores-negative} -top_zscore_table(micro_bm_proced, direction = "regression") -``` - - -::: - -::: {.callout-note collapse="true"} - -## Largest 20 improvements between baseline and contender - -```{r table-top-zscores-positive} -top_zscore_table(micro_bm_proced, direction = "improvement") -``` - -::: - -## z-score distribution - -Plotting the distribution of zscores for all microbenchmark results will help identify any systematic differences between the baseline and contender. The shape of the distribution of z-scores provides a sense of the overall performance of the contender relative to the baseline. Narrow distributions centered around 0 indicate that the contender is performing similarly to the baseline. Wider distributions indicate that the contender is performing differently than the baseline with left skewing indicating regressions and right skewing indicating improvements. - - -```{ojs} -Plot.plot({ - y: {grid: true}, - x: { - label: "z-score" - }, - color: {legend: false}, - width: 1000, - height: 400, - marks: [ - Plot.rectY(microBmProced, Plot.binX({y: "count"}, {x: "analysis_lookback_z_score_z_score", fill: "grey", tip: true})), - Plot.ruleY([0]) - ] -}) -``` - -```{r ojs-defn} -ojs_define(ojs_micro_bm_proced = micro_bm_proced) -ojs_define(ojs_change_cols = rev(change_cols)) -ojs_define(ojs_pn_lab = unique(micro_bm_proced$pn_lab)) -``` - -```{ojs setup-micro-bm} -Plot = await import("https://esm.sh/@observablehq/plot"); -import { aq, op } from '@uwdata/arquero'; -boxWidth = 900 -microBmProced = aq.from(transpose(ojs_micro_bm_proced)) -``` - -## Microbenchmark explorer {#micro-bm-explorer} - -This microbenchmarks explorer allows you to filter the microbenchmark results by language, suite, and benchmark name and toggle regressions and improvements based on a threshold level of `r threshold` z-scores. Languages, suite and benchmark name need to be selected to show a benchmark plot. Additional benchmark parameters are displayed on the vertical axis resulting in each bar representing a case permutation. If a benchmark does not have additional parameters, the full case permutation string is displayed. Each bar can be clicked to open the Conbench UI page for that benchmark providing additional history and metadata for that case permutation. - -```{ojs filter-micro-bm} -// Top level: are there regressions/improvements? -viewof changes = Inputs.checkbox(["Regressions", "Improvements"], { - label: md`**Benchmark Status**`, - value: ["Regressions"] - }) - -// Choose the state of the benchmark -microBmProcedChanges = { - let microBmProcedParams; - let hasRegressions = changes.includes("Regressions"); - let hasImprovements = changes.includes("Improvements"); - microBmProcedParams = microBmProced - .params({hr: hasRegressions, hi: hasImprovements}) - if (hasRegressions && hasImprovements) { - microBmProcedParams = microBmProced - .filter((d, $) => d.analysis_pairwise_regression_indicated==$.hr || d.analysis_pairwise_improvement_indicated==$.hi); - } else if (hasImprovements) { - microBmProcedParams = microBmProced - .filter((d, $) => d.analysis_pairwise_improvement_indicated==$.hi) - } else if (hasRegressions) { - microBmProcedParams = microBmProced - .filter((d, $) => d.analysis_pairwise_regression_indicated==$.hr); - } else { - microBmProcedParams = microBmProced; - } - return microBmProcedParams; -} - -// Choose the language -allLanguageValues = [null].concat(microBmProcedChanges.dedupe('language').array('language')) - -viewof languageSelected = Inputs.select(allLanguageValues, { - label: md`**Language**`, - value: [allLanguageValues[0]], - width: boxWidth -}) - -languages = { - return (languageSelected === null) - ? microBmProcedChanges // If languageSelected is "All languages", no filtering is applied - : microBmProcedChanges.filter(aq.escape(d => op.includes(d.language, languageSelected))); -} - - -allSuiteValues = [null].concat(languages.dedupe('suite').array('suite')) - -// Choose the suite -viewof suiteSelected = Inputs.select(allSuiteValues, { - label: md`**Suite**`, - value: [allSuiteValues[0]], - width: boxWidth -}) - - -suites = { - return (suiteSelected === null) - ? languages - : languages.filter(aq.escape(d => op.includes(d.suite, suiteSelected))); -} - -allNameValues = [null].concat(suites.dedupe('name').array('name')) - -// Choose the benchmark -viewof nameSelected = Inputs.select(allNameValues, { - label: md`**Benchmark Name**`, - value: [allNameValues[0]], - width: boxWidth -}) - -microBmProcedChangesFiltered = { - return (nameSelected === null) - ? suites - : suites.filter(aq.escape(d => op.includes(d.name, nameSelected))); -} -``` - -```{ojs plot-micro-bm} -// long labels need special handlings -margins = { - let hasRegressions = changes.includes("Regressions"); - let hasImprovements = changes.includes("Improvements"); - let margin = [300, 300]; - if (hasRegressions && hasImprovements) { - margin = margin; - } else if (hasImprovements) { - margin = [0, 600]; - } else if (hasRegressions) { - margin = [600, 0]; - } - return margin; -} - - -displayPlot = nameSelected !== null && suiteSelected !== null && languageSelected !== null - -// Only display plots if a benchmark is selected -mbPlot = { - if (displayPlot) { - return Plot.plot({ - width: 1200, - height: microBmProcedChangesFiltered.numRows() * 30 + 100, //adjust height of plot based on number of rows - marginRight: margins[0], - marginLeft: margins[1], - label: null, - x: { - axis: "top", - label: "% change", - labelAnchor: "center", - labelOffset: 30 - }, - style: { - fontSize: "14px", - fontFamily: "Roboto Mono" - }, - color: { - range: ojs_change_cols, - domain: ojs_pn_lab, - type: "categorical", - legend: true - }, - marks: [ - Plot.barX(microBmProcedChangesFiltered, { - y: "params", - x: "change", - color: "black", - fill: "pn_lab", - fillOpacity: 0.75, - sort: { y: "x" }, - channels: { difference: "difference", params: "params" }, - href: "cb_url", - tip: true - }), - Plot.gridX({ stroke: "white", strokeOpacity: 0.5 }), - Plot.ruleX([0]), - d3 - .groups(microBmProcedChangesFiltered, (d) => d.change > 0) - .map(([posneg, dat]) => [ - Plot.axisY({ - x: 0, - ticks: dat.map((d) => d.params), - tickSize: 0, - anchor: posneg ? "left" : "right" - }) - ]) - ] - }); - } else { - return md`**Language, suite and benchmark all need a selection for a plot to be displayed.**`; - } -} - -mbPlot -``` - - -```{css, echo=FALSE} -div.main-container { - max-width: 2000px; -} -``` \ No newline at end of file diff --git a/performance-release-report/renv.lock b/performance-release-report/renv.lock deleted file mode 100644 index b42d9bc78a4..00000000000 --- a/performance-release-report/renv.lock +++ /dev/null @@ -1,1172 +0,0 @@ -{ - "R": { - "Version": "4.3.1", - "Repositories": [ - { - "Name": "CRAN", - "URL": "https://packagemanager.rstudio.com/all/latest" - }, - { - "Name": "voltron data rpkg-repo", - "URL": "https://voltrondata.github.io/rpkg-repo" - } - ] - }, - "Packages": { - "MASS": { - "Package": "MASS", - "Version": "7.3-60", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "grDevices", - "graphics", - "methods", - "stats", - "utils" - ], - "Hash": "a56a6365b3fa73293ea8d084be0d9bb0" - }, - 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"Requirements": [ - "R", - "cli", - "glue", - "lifecycle", - "rlang" - ], - "Hash": "a745bda7aff4734c17294bb41d4e4607" - }, - "viridisLite": { - "Package": "viridisLite", - "Version": "0.4.2", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R" - ], - "Hash": "c826c7c4241b6fc89ff55aaea3fa7491" - }, - "withr": { - "Package": "withr", - "Version": "2.5.0", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "R", - "grDevices", - "graphics", - "stats" - ], - "Hash": "c0e49a9760983e81e55cdd9be92e7182" - }, - "xfun": { - "Package": "xfun", - "Version": "0.39", - "Source": "Repository", - "Repository": "RSPM", - "Requirements": [ - "stats", - "tools" - ], - "Hash": "8f56e9acb54fb525e66464d57ab58bcb" - }, - "xml2": { - "Package": "xml2", - "Version": "1.3.4", - "Source": "Repository", - "Repository": "CRAN", - "Requirements": [ - "R", - "methods" - ], - "Hash": "7dc765ac9b909487326a7d471fdd3821" - }, - "yaml": { - "Package": "yaml", - "Version": "2.3.7", - "Source": "Repository", - "Repository": "RSPM", - "Hash": "0d0056cc5383fbc240ccd0cb584bf436" - } - } -} diff --git a/performance-release-report/renv/.gitignore b/performance-release-report/renv/.gitignore deleted file mode 100644 index 0ec0cbba2d7..00000000000 --- a/performance-release-report/renv/.gitignore +++ /dev/null @@ -1,7 +0,0 @@ -library/ -local/ -cellar/ -lock/ -python/ -sandbox/ -staging/ diff --git a/performance-release-report/renv/activate.R b/performance-release-report/renv/activate.R deleted file mode 100644 index 65b3cedc10e..00000000000 --- a/performance-release-report/renv/activate.R +++ /dev/null @@ -1,1201 +0,0 @@ - -local({ - - # the requested version of renv - version <- "1.0.2" - attr(version, "sha") <- "1.0.2" - - # the project directory - project <- getwd() - - # use start-up diagnostics if enabled - diagnostics <- Sys.getenv("RENV_STARTUP_DIAGNOSTICS", unset = "FALSE") - if (diagnostics) { - start <- Sys.time() - profile <- tempfile("renv-startup-", fileext = ".Rprof") - utils::Rprof(profile) - on.exit({ - utils::Rprof(NULL) - elapsed <- signif(difftime(Sys.time(), start, units = "auto"), digits = 2L) - writeLines(sprintf("- renv took %s to run the autoloader.", format(elapsed))) - writeLines(sprintf("- Profile: %s", profile)) - print(utils::summaryRprof(profile)) - }, add = TRUE) - } - - # figure out whether the autoloader is enabled - enabled <- local({ - - # first, check config option - override <- getOption("renv.config.autoloader.enabled") - if (!is.null(override)) - return(override) - - # next, check environment variables - # TODO: prefer using the configuration one in the future - envvars <- c( - "RENV_CONFIG_AUTOLOADER_ENABLED", - "RENV_AUTOLOADER_ENABLED", - "RENV_ACTIVATE_PROJECT" - ) - - for (envvar in envvars) { - envval <- Sys.getenv(envvar, unset = NA) - if (!is.na(envval)) - return(tolower(envval) %in% c("true", "t", "1")) - } - - # enable by default - TRUE - - }) - - if (!enabled) - return(FALSE) - - # avoid recursion - if (identical(getOption("renv.autoloader.running"), TRUE)) { - warning("ignoring recursive attempt to run renv autoloader") - return(invisible(TRUE)) - } - - # signal that we're loading renv during R startup - options(renv.autoloader.running = TRUE) - on.exit(options(renv.autoloader.running = NULL), add = TRUE) - - # signal that we've consented to use renv - options(renv.consent = TRUE) - - # load the 'utils' package eagerly -- this ensures that renv shims, which - # mask 'utils' packages, will come first on the search path - library(utils, lib.loc = .Library) - - # unload renv if it's already been loaded - if ("renv" %in% loadedNamespaces()) - unloadNamespace("renv") - - # load bootstrap tools - `%||%` <- function(x, y) { - if (is.null(x)) y else x - } - - catf <- function(fmt, ..., appendLF = TRUE) { - - quiet <- getOption("renv.bootstrap.quiet", default = FALSE) - if (quiet) - return(invisible()) - - msg <- sprintf(fmt, ...) - cat(msg, file = stdout(), sep = if (appendLF) "\n" else "") - - invisible(msg) - - } - - header <- function(label, - ..., - prefix = "#", - suffix = "-", - n = min(getOption("width"), 78)) - { - label <- sprintf(label, ...) - n <- max(n - nchar(label) - nchar(prefix) - 2L, 8L) - if (n <= 0) - return(paste(prefix, label)) - - tail <- paste(rep.int(suffix, n), collapse = "") - paste0(prefix, " ", label, " ", tail) - - } - - startswith <- function(string, prefix) { - substring(string, 1, nchar(prefix)) == prefix - } - - bootstrap <- function(version, library) { - - friendly <- renv_bootstrap_version_friendly(version) - section <- header(sprintf("Bootstrapping renv %s", friendly)) - catf(section) - - # attempt to download renv - catf("- Downloading renv ... ", appendLF = FALSE) - withCallingHandlers( - tarball <- renv_bootstrap_download(version), - error = function(err) { - catf("FAILED") - stop("failed to download:\n", conditionMessage(err)) - } - ) - catf("OK") - on.exit(unlink(tarball), add = TRUE) - - # now attempt to install - catf("- Installing renv ... ", appendLF = FALSE) - withCallingHandlers( - status <- renv_bootstrap_install(version, tarball, library), - error = function(err) { - catf("FAILED") - stop("failed to install:\n", conditionMessage(err)) - } - ) - catf("OK") - - # add empty line to break up bootstrapping from normal output - catf("") - - return(invisible()) - } - - renv_bootstrap_tests_running <- function() { - getOption("renv.tests.running", default = FALSE) - } - - renv_bootstrap_repos <- function() { - - # get CRAN repository - cran <- getOption("renv.repos.cran", "https://cloud.r-project.org") - - # check for repos override - repos <- Sys.getenv("RENV_CONFIG_REPOS_OVERRIDE", unset = NA) - if (!is.na(repos)) { - - # check for RSPM; if set, use a fallback repository for renv - rspm <- Sys.getenv("RSPM", unset = NA) - if (identical(rspm, repos)) - repos <- c(RSPM = rspm, CRAN = cran) - - return(repos) - - } - - # check for lockfile repositories - repos <- tryCatch(renv_bootstrap_repos_lockfile(), error = identity) - if (!inherits(repos, "error") && length(repos)) - return(repos) - - # retrieve current repos - repos <- getOption("repos") - - # ensure @CRAN@ entries are resolved - repos[repos == "@CRAN@"] <- cran - - # add in renv.bootstrap.repos if set - default <- c(FALLBACK = "https://cloud.r-project.org") - extra <- getOption("renv.bootstrap.repos", default = default) - repos <- c(repos, extra) - - # remove duplicates that might've snuck in - dupes <- duplicated(repos) | duplicated(names(repos)) - repos[!dupes] - - } - - renv_bootstrap_repos_lockfile <- function() { - - lockpath <- Sys.getenv("RENV_PATHS_LOCKFILE", unset = "renv.lock") - if (!file.exists(lockpath)) - return(NULL) - - lockfile <- tryCatch(renv_json_read(lockpath), error = identity) - if (inherits(lockfile, "error")) { - warning(lockfile) - return(NULL) - } - - repos <- lockfile$R$Repositories - if (length(repos) == 0) - return(NULL) - - keys <- vapply(repos, `[[`, "Name", FUN.VALUE = character(1)) - vals <- vapply(repos, `[[`, "URL", FUN.VALUE = character(1)) - names(vals) <- keys - - return(vals) - - } - - renv_bootstrap_download <- function(version) { - - sha <- attr(version, "sha", exact = TRUE) - - methods <- if (!is.null(sha)) { - - # attempting to bootstrap a development version of renv - c( - function() renv_bootstrap_download_tarball(sha), - function() renv_bootstrap_download_github(sha) - ) - - } else { - - # attempting to bootstrap a release version of renv - c( - function() renv_bootstrap_download_tarball(version), - function() renv_bootstrap_download_cran_latest(version), - function() renv_bootstrap_download_cran_archive(version) - ) - - } - - for (method in methods) { - path <- tryCatch(method(), error = identity) - if (is.character(path) && file.exists(path)) - return(path) - } - - stop("All download methods failed") - - } - - renv_bootstrap_download_impl <- function(url, destfile) { - - mode <- "wb" - - # https://bugs.r-project.org/bugzilla/show_bug.cgi?id=17715 - fixup <- - Sys.info()[["sysname"]] == "Windows" && - substring(url, 1L, 5L) == "file:" - - if (fixup) - mode <- "w+b" - - args <- list( - url = url, - destfile = destfile, - mode = mode, - quiet = TRUE - ) - - if ("headers" %in% names(formals(utils::download.file))) - args$headers <- renv_bootstrap_download_custom_headers(url) - - do.call(utils::download.file, args) - - } - - renv_bootstrap_download_custom_headers <- function(url) { - - headers <- getOption("renv.download.headers") - if (is.null(headers)) - return(character()) - - if (!is.function(headers)) - stopf("'renv.download.headers' is not a function") - - headers <- headers(url) - if (length(headers) == 0L) - return(character()) - - if (is.list(headers)) - headers <- unlist(headers, recursive = FALSE, use.names = TRUE) - - ok <- - is.character(headers) && - is.character(names(headers)) && - all(nzchar(names(headers))) - - if (!ok) - stop("invocation of 'renv.download.headers' did not return a named character vector") - - headers - - } - - renv_bootstrap_download_cran_latest <- function(version) { - - spec <- renv_bootstrap_download_cran_latest_find(version) - type <- spec$type - repos <- spec$repos - - baseurl <- utils::contrib.url(repos = repos, type = type) - ext <- if (identical(type, "source")) - ".tar.gz" - else if (Sys.info()[["sysname"]] == "Windows") - ".zip" - else - ".tgz" - name <- sprintf("renv_%s%s", version, ext) - url <- paste(baseurl, name, sep = "/") - - destfile <- file.path(tempdir(), name) - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (inherits(status, "condition")) - return(FALSE) - - # report success and return - destfile - - } - - renv_bootstrap_download_cran_latest_find <- function(version) { - - # check whether binaries are supported on this system - binary <- - getOption("renv.bootstrap.binary", default = TRUE) && - !identical(.Platform$pkgType, "source") && - !identical(getOption("pkgType"), "source") && - Sys.info()[["sysname"]] %in% c("Darwin", "Windows") - - types <- c(if (binary) "binary", "source") - - # iterate over types + repositories - for (type in types) { - for (repos in renv_bootstrap_repos()) { - - # retrieve package database - db <- tryCatch( - as.data.frame( - utils::available.packages(type = type, repos = repos), - stringsAsFactors = FALSE - ), - error = identity - ) - - if (inherits(db, "error")) - next - - # check for compatible entry - entry <- db[db$Package %in% "renv" & db$Version %in% version, ] - if (nrow(entry) == 0) - next - - # found it; return spec to caller - spec <- list(entry = entry, type = type, repos = repos) - return(spec) - - } - } - - # if we got here, we failed to find renv - fmt <- "renv %s is not available from your declared package repositories" - stop(sprintf(fmt, version)) - - } - - renv_bootstrap_download_cran_archive <- function(version) { - - name <- sprintf("renv_%s.tar.gz", version) - repos <- renv_bootstrap_repos() - urls <- file.path(repos, "src/contrib/Archive/renv", name) - destfile <- file.path(tempdir(), name) - - for (url in urls) { - - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (identical(status, 0L)) - return(destfile) - - } - - return(FALSE) - - } - - renv_bootstrap_download_tarball <- function(version) { - - # if the user has provided the path to a tarball via - # an environment variable, then use it - tarball <- Sys.getenv("RENV_BOOTSTRAP_TARBALL", unset = NA) - if (is.na(tarball)) - return() - - # allow directories - if (dir.exists(tarball)) { - name <- sprintf("renv_%s.tar.gz", version) - tarball <- file.path(tarball, name) - } - - # bail if it doesn't exist - if (!file.exists(tarball)) { - - # let the user know we weren't able to honour their request - fmt <- "- RENV_BOOTSTRAP_TARBALL is set (%s) but does not exist." - msg <- sprintf(fmt, tarball) - warning(msg) - - # bail - return() - - } - - catf("- Using local tarball '%s'.", tarball) - tarball - - } - - renv_bootstrap_download_github <- function(version) { - - enabled <- Sys.getenv("RENV_BOOTSTRAP_FROM_GITHUB", unset = "TRUE") - if (!identical(enabled, "TRUE")) - return(FALSE) - - # prepare download options - pat <- Sys.getenv("GITHUB_PAT") - if (nzchar(Sys.which("curl")) && nzchar(pat)) { - fmt <- "--location --fail --header \"Authorization: token %s\"" - extra <- sprintf(fmt, pat) - saved <- options("download.file.method", "download.file.extra") - options(download.file.method = "curl", download.file.extra = extra) - on.exit(do.call(base::options, saved), add = TRUE) - } else if (nzchar(Sys.which("wget")) && nzchar(pat)) { - fmt <- "--header=\"Authorization: token %s\"" - extra <- sprintf(fmt, pat) - saved <- options("download.file.method", "download.file.extra") - options(download.file.method = "wget", download.file.extra = extra) - on.exit(do.call(base::options, saved), add = TRUE) - } - - url <- file.path("https://api.github.com/repos/rstudio/renv/tarball", version) - name <- sprintf("renv_%s.tar.gz", version) - destfile <- file.path(tempdir(), name) - - status <- tryCatch( - renv_bootstrap_download_impl(url, destfile), - condition = identity - ) - - if (!identical(status, 0L)) - return(FALSE) - - renv_bootstrap_download_augment(destfile) - - return(destfile) - - } - - # Add Sha to DESCRIPTION. This is stop gap until #890, after which we - # can use renv::install() to fully capture metadata. - renv_bootstrap_download_augment <- function(destfile) { - sha <- renv_bootstrap_git_extract_sha1_tar(destfile) - if (is.null(sha)) { - return() - } - - # Untar - tempdir <- tempfile("renv-github-") - on.exit(unlink(tempdir, recursive = TRUE), add = TRUE) - untar(destfile, exdir = tempdir) - pkgdir <- dir(tempdir, full.names = TRUE)[[1]] - - # Modify description - desc_path <- file.path(pkgdir, "DESCRIPTION") - desc_lines <- readLines(desc_path) - remotes_fields <- c( - "RemoteType: github", - "RemoteHost: api.github.com", - "RemoteRepo: renv", - "RemoteUsername: rstudio", - "RemotePkgRef: rstudio/renv", - paste("RemoteRef: ", sha), - paste("RemoteSha: ", sha) - ) - writeLines(c(desc_lines[desc_lines != ""], remotes_fields), con = desc_path) - - # Re-tar - local({ - old <- setwd(tempdir) - on.exit(setwd(old), add = TRUE) - - tar(destfile, compression = "gzip") - }) - invisible() - } - - # Extract the commit hash from a git archive. Git archives include the SHA1 - # hash as the comment field of the tarball pax extended header - # (see https://www.kernel.org/pub/software/scm/git/docs/git-archive.html) - # For GitHub archives this should be the first header after the default one - # (512 byte) header. - renv_bootstrap_git_extract_sha1_tar <- function(bundle) { - - # open the bundle for reading - # We use gzcon for everything because (from ?gzcon) - # > Reading from a connection which does not supply a 'gzip' magic - # > header is equivalent to reading from the original connection - conn <- gzcon(file(bundle, open = "rb", raw = TRUE)) - on.exit(close(conn)) - - # The default pax header is 512 bytes long and the first pax extended header - # with the comment should be 51 bytes long - # `52 comment=` (11 chars) + 40 byte SHA1 hash - len <- 0x200 + 0x33 - res <- rawToChar(readBin(conn, "raw", n = len)[0x201:len]) - - if (grepl("^52 comment=", res)) { - sub("52 comment=", "", res) - } else { - NULL - } - } - - renv_bootstrap_install <- function(version, tarball, library) { - - # attempt to install it into project library - dir.create(library, showWarnings = FALSE, recursive = TRUE) - output <- renv_bootstrap_install_impl(library, tarball) - - # check for successful install - status <- attr(output, "status") - if (is.null(status) || identical(status, 0L)) - return(status) - - # an error occurred; report it - header <- "installation of renv failed" - lines <- paste(rep.int("=", nchar(header)), collapse = "") - text <- paste(c(header, lines, output), collapse = "\n") - stop(text) - - } - - renv_bootstrap_install_impl <- function(library, tarball) { - - # invoke using system2 so we can capture and report output - bin <- R.home("bin") - exe <- if (Sys.info()[["sysname"]] == "Windows") "R.exe" else "R" - R <- file.path(bin, exe) - - args <- c( - "--vanilla", "CMD", "INSTALL", "--no-multiarch", - "-l", shQuote(path.expand(library)), - shQuote(path.expand(tarball)) - ) - - system2(R, args, stdout = TRUE, stderr = TRUE) - - } - - renv_bootstrap_platform_prefix <- function() { - - # construct version prefix - version <- paste(R.version$major, R.version$minor, sep = ".") - prefix <- paste("R", numeric_version(version)[1, 1:2], sep = "-") - - # include SVN revision for development versions of R - # (to avoid sharing platform-specific artefacts with released versions of R) - devel <- - identical(R.version[["status"]], "Under development (unstable)") || - identical(R.version[["nickname"]], "Unsuffered Consequences") - - if (devel) - prefix <- paste(prefix, R.version[["svn rev"]], sep = "-r") - - # build list of path components - components <- c(prefix, R.version$platform) - - # include prefix if provided by user - prefix <- renv_bootstrap_platform_prefix_impl() - if (!is.na(prefix) && nzchar(prefix)) - components <- c(prefix, components) - - # build prefix - paste(components, collapse = "/") - - } - - renv_bootstrap_platform_prefix_impl <- function() { - - # if an explicit prefix has been supplied, use it - prefix <- Sys.getenv("RENV_PATHS_PREFIX", unset = NA) - if (!is.na(prefix)) - return(prefix) - - # if the user has requested an automatic prefix, generate it - auto <- Sys.getenv("RENV_PATHS_PREFIX_AUTO", unset = NA) - if (auto %in% c("TRUE", "True", "true", "1")) - return(renv_bootstrap_platform_prefix_auto()) - - # empty string on failure - "" - - } - - renv_bootstrap_platform_prefix_auto <- function() { - - prefix <- tryCatch(renv_bootstrap_platform_os(), error = identity) - if (inherits(prefix, "error") || prefix %in% "unknown") { - - msg <- paste( - "failed to infer current operating system", - "please file a bug report at https://github.com/rstudio/renv/issues", - sep = "; " - ) - - warning(msg) - - } - - prefix - - } - - renv_bootstrap_platform_os <- function() { - - sysinfo <- Sys.info() - sysname <- sysinfo[["sysname"]] - - # handle Windows + macOS up front - if (sysname == "Windows") - return("windows") - else if (sysname == "Darwin") - return("macos") - - # check for os-release files - for (file in c("/etc/os-release", "/usr/lib/os-release")) - if (file.exists(file)) - return(renv_bootstrap_platform_os_via_os_release(file, sysinfo)) - - # check for redhat-release files - if (file.exists("/etc/redhat-release")) - return(renv_bootstrap_platform_os_via_redhat_release()) - - "unknown" - - } - - renv_bootstrap_platform_os_via_os_release <- function(file, sysinfo) { - - # read /etc/os-release - release <- utils::read.table( - file = file, - sep = "=", - quote = c("\"", "'"), - col.names = c("Key", "Value"), - comment.char = "#", - stringsAsFactors = FALSE - ) - - vars <- as.list(release$Value) - names(vars) <- release$Key - - # get os name - os <- tolower(sysinfo[["sysname"]]) - - # read id - id <- "unknown" - for (field in c("ID", "ID_LIKE")) { - if (field %in% names(vars) && nzchar(vars[[field]])) { - id <- vars[[field]] - break - } - } - - # read version - version <- "unknown" - for (field in c("UBUNTU_CODENAME", "VERSION_CODENAME", "VERSION_ID", "BUILD_ID")) { - if (field %in% names(vars) && nzchar(vars[[field]])) { - version <- vars[[field]] - break - } - } - - # join together - paste(c(os, id, version), collapse = "-") - - } - - renv_bootstrap_platform_os_via_redhat_release <- function() { - - # read /etc/redhat-release - contents <- readLines("/etc/redhat-release", warn = FALSE) - - # infer id - id <- if (grepl("centos", contents, ignore.case = TRUE)) - "centos" - else if (grepl("redhat", contents, ignore.case = TRUE)) - "redhat" - else - "unknown" - - # try to find a version component (very hacky) - version <- "unknown" - - parts <- strsplit(contents, "[[:space:]]")[[1L]] - for (part in parts) { - - nv <- tryCatch(numeric_version(part), error = identity) - if (inherits(nv, "error")) - next - - version <- nv[1, 1] - break - - } - - paste(c("linux", id, version), collapse = "-") - - } - - renv_bootstrap_library_root_name <- function(project) { - - # use project name as-is if requested - asis <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT_ASIS", unset = "FALSE") - if (asis) - return(basename(project)) - - # otherwise, disambiguate based on project's path - id <- substring(renv_bootstrap_hash_text(project), 1L, 8L) - paste(basename(project), id, sep = "-") - - } - - renv_bootstrap_library_root <- function(project) { - - prefix <- renv_bootstrap_profile_prefix() - - path <- Sys.getenv("RENV_PATHS_LIBRARY", unset = NA) - if (!is.na(path)) - return(paste(c(path, prefix), collapse = "/")) - - path <- renv_bootstrap_library_root_impl(project) - if (!is.null(path)) { - name <- renv_bootstrap_library_root_name(project) - return(paste(c(path, prefix, name), collapse = "/")) - } - - renv_bootstrap_paths_renv("library", project = project) - - } - - renv_bootstrap_library_root_impl <- function(project) { - - root <- Sys.getenv("RENV_PATHS_LIBRARY_ROOT", unset = NA) - if (!is.na(root)) - return(root) - - type <- renv_bootstrap_project_type(project) - if (identical(type, "package")) { - userdir <- renv_bootstrap_user_dir() - return(file.path(userdir, "library")) - } - - } - - renv_bootstrap_validate_version <- function(version, description = NULL) { - - # resolve description file - # - # avoid passing lib.loc to `packageDescription()` below, since R will - # use the loaded version of the package by default anyhow. note that - # this function should only be called after 'renv' is loaded - # https://github.com/rstudio/renv/issues/1625 - description <- description %||% packageDescription("renv") - - # check whether requested version 'version' matches loaded version of renv - sha <- attr(version, "sha", exact = TRUE) - valid <- if (!is.null(sha)) - renv_bootstrap_validate_version_dev(sha, description) - else - renv_bootstrap_validate_version_release(version, description) - - if (valid) - return(TRUE) - - # the loaded version of renv doesn't match the requested version; - # give the user instructions on how to proceed - remote <- if (!is.null(description[["RemoteSha"]])) { - paste("rstudio/renv", description[["RemoteSha"]], sep = "@") - } else { - paste("renv", description[["Version"]], sep = "@") - } - - # display both loaded version + sha if available - friendly <- renv_bootstrap_version_friendly( - version = description[["Version"]], - sha = description[["RemoteSha"]] - ) - - fmt <- paste( - "renv %1$s was loaded from project library, but this project is configured to use renv %2$s.", - "- Use `renv::record(\"%3$s\")` to record renv %1$s in the lockfile.", - "- Use `renv::restore(packages = \"renv\")` to install renv %2$s into the project library.", - sep = "\n" - ) - catf(fmt, friendly, renv_bootstrap_version_friendly(version), remote) - - FALSE - - } - - renv_bootstrap_validate_version_dev <- function(version, description) { - expected <- description[["RemoteSha"]] - is.character(expected) && startswith(expected, version) - } - - renv_bootstrap_validate_version_release <- function(version, description) { - expected <- description[["Version"]] - is.character(expected) && identical(expected, version) - } - - renv_bootstrap_hash_text <- function(text) { - - hashfile <- tempfile("renv-hash-") - on.exit(unlink(hashfile), add = TRUE) - - writeLines(text, con = hashfile) - tools::md5sum(hashfile) - - } - - renv_bootstrap_load <- function(project, libpath, version) { - - # try to load renv from the project library - if (!requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) - return(FALSE) - - # warn if the version of renv loaded does not match - renv_bootstrap_validate_version(version) - - # execute renv load hooks, if any - hooks <- getHook("renv::autoload") - for (hook in hooks) - if (is.function(hook)) - tryCatch(hook(), error = warnify) - - # load the project - renv::load(project) - - TRUE - - } - - renv_bootstrap_profile_load <- function(project) { - - # if RENV_PROFILE is already set, just use that - profile <- Sys.getenv("RENV_PROFILE", unset = NA) - if (!is.na(profile) && nzchar(profile)) - return(profile) - - # check for a profile file (nothing to do if it doesn't exist) - path <- renv_bootstrap_paths_renv("profile", profile = FALSE, project = project) - if (!file.exists(path)) - return(NULL) - - # read the profile, and set it if it exists - contents <- readLines(path, warn = FALSE) - if (length(contents) == 0L) - return(NULL) - - # set RENV_PROFILE - profile <- contents[[1L]] - if (!profile %in% c("", "default")) - Sys.setenv(RENV_PROFILE = profile) - - profile - - } - - renv_bootstrap_profile_prefix <- function() { - profile <- renv_bootstrap_profile_get() - if (!is.null(profile)) - return(file.path("profiles", profile, "renv")) - } - - renv_bootstrap_profile_get <- function() { - profile <- Sys.getenv("RENV_PROFILE", unset = "") - renv_bootstrap_profile_normalize(profile) - } - - renv_bootstrap_profile_set <- function(profile) { - profile <- renv_bootstrap_profile_normalize(profile) - if (is.null(profile)) - Sys.unsetenv("RENV_PROFILE") - else - Sys.setenv(RENV_PROFILE = profile) - } - - renv_bootstrap_profile_normalize <- function(profile) { - - if (is.null(profile) || profile %in% c("", "default")) - return(NULL) - - profile - - } - - renv_bootstrap_path_absolute <- function(path) { - - substr(path, 1L, 1L) %in% c("~", "/", "\\") || ( - substr(path, 1L, 1L) %in% c(letters, LETTERS) && - substr(path, 2L, 3L) %in% c(":/", ":\\") - ) - - } - - renv_bootstrap_paths_renv <- function(..., profile = TRUE, project = NULL) { - renv <- Sys.getenv("RENV_PATHS_RENV", unset = "renv") - root <- if (renv_bootstrap_path_absolute(renv)) NULL else project - prefix <- if (profile) renv_bootstrap_profile_prefix() - components <- c(root, renv, prefix, ...) - paste(components, collapse = "/") - } - - renv_bootstrap_project_type <- function(path) { - - descpath <- file.path(path, "DESCRIPTION") - if (!file.exists(descpath)) - return("unknown") - - desc <- tryCatch( - read.dcf(descpath, all = TRUE), - error = identity - ) - - if (inherits(desc, "error")) - return("unknown") - - type <- desc$Type - if (!is.null(type)) - return(tolower(type)) - - package <- desc$Package - if (!is.null(package)) - return("package") - - "unknown" - - } - - renv_bootstrap_user_dir <- function() { - dir <- renv_bootstrap_user_dir_impl() - path.expand(chartr("\\", "/", dir)) - } - - renv_bootstrap_user_dir_impl <- function() { - - # use local override if set - override <- getOption("renv.userdir.override") - if (!is.null(override)) - return(override) - - # use R_user_dir if available - tools <- asNamespace("tools") - if (is.function(tools$R_user_dir)) - return(tools$R_user_dir("renv", "cache")) - - # try using our own backfill for older versions of R - envvars <- c("R_USER_CACHE_DIR", "XDG_CACHE_HOME") - for (envvar in envvars) { - root <- Sys.getenv(envvar, unset = NA) - if (!is.na(root)) - return(file.path(root, "R/renv")) - } - - # use platform-specific default fallbacks - if (Sys.info()[["sysname"]] == "Windows") - file.path(Sys.getenv("LOCALAPPDATA"), "R/cache/R/renv") - else if (Sys.info()[["sysname"]] == "Darwin") - "~/Library/Caches/org.R-project.R/R/renv" - else - "~/.cache/R/renv" - - } - - renv_bootstrap_version_friendly <- function(version, shafmt = NULL, sha = NULL) { - sha <- sha %||% attr(version, "sha", exact = TRUE) - parts <- c(version, sprintf(shafmt %||% " [sha: %s]", substring(sha, 1L, 7L))) - paste(parts, collapse = "") - } - - renv_bootstrap_exec <- function(project, libpath, version) { - if (!renv_bootstrap_load(project, libpath, version)) - renv_bootstrap_run(version, libpath) - } - - renv_bootstrap_run <- function(version, libpath) { - - # perform bootstrap - bootstrap(version, libpath) - - # exit early if we're just testing bootstrap - if (!is.na(Sys.getenv("RENV_BOOTSTRAP_INSTALL_ONLY", unset = NA))) - return(TRUE) - - # try again to load - if (requireNamespace("renv", lib.loc = libpath, quietly = TRUE)) { - return(renv::load(project = getwd())) - } - - # failed to download or load renv; warn the user - msg <- c( - "Failed to find an renv installation: the project will not be loaded.", - "Use `renv::activate()` to re-initialize the project." - ) - - warning(paste(msg, collapse = "\n"), call. = FALSE) - - } - - - renv_bootstrap_in_rstudio <- function() { - commandArgs()[[1]] == "RStudio" - } - - # Used to work around buglet in RStudio if hook uses readline - renv_bootstrap_flush_console <- function() { - tryCatch({ - tools <- as.environment("tools:rstudio") - tools$.rs.api.sendToConsole("", echo = FALSE, focus = FALSE) - }, error = function(cnd) {}) - } - - renv_json_read <- function(file = NULL, text = NULL) { - - jlerr <- NULL - - # if jsonlite is loaded, use that instead - if ("jsonlite" %in% loadedNamespaces()) { - - json <- catch(renv_json_read_jsonlite(file, text)) - if (!inherits(json, "error")) - return(json) - - jlerr <- json - - } - - # otherwise, fall back to the default JSON reader - json <- catch(renv_json_read_default(file, text)) - if (!inherits(json, "error")) - return(json) - - # report an error - if (!is.null(jlerr)) - stop(jlerr) - else - stop(json) - - } - - renv_json_read_jsonlite <- function(file = NULL, text = NULL) { - text <- paste(text %||% read(file), collapse = "\n") - jsonlite::fromJSON(txt = text, simplifyVector = FALSE) - } - - renv_json_read_default <- function(file = NULL, text = NULL) { - - # find strings in the JSON - text <- paste(text %||% read(file), collapse = "\n") - pattern <- '["](?:(?:\\\\.)|(?:[^"\\\\]))*?["]' - locs <- gregexpr(pattern, text, perl = TRUE)[[1]] - - # if any are found, replace them with placeholders - replaced <- text - strings <- character() - replacements <- character() - - if (!identical(c(locs), -1L)) { - - # get the string values - starts <- locs - ends <- locs + attr(locs, "match.length") - 1L - strings <- substring(text, starts, ends) - - # only keep those requiring escaping - strings <- grep("[[\\]{}:]", strings, perl = TRUE, value = TRUE) - - # compute replacements - replacements <- sprintf('"\032%i\032"', seq_along(strings)) - - # replace the strings - mapply(function(string, replacement) { - replaced <<- sub(string, replacement, replaced, fixed = TRUE) - }, strings, replacements) - - } - - # transform the JSON into something the R parser understands - transformed <- replaced - transformed <- gsub("{}", "`names<-`(list(), character())", transformed, fixed = TRUE) - transformed <- gsub("[[{]", "list(", transformed, perl = TRUE) - transformed <- gsub("[]}]", ")", transformed, perl = TRUE) - transformed <- gsub(":", "=", transformed, fixed = TRUE) - text <- paste(transformed, collapse = "\n") - - # parse it - json <- parse(text = text, keep.source = FALSE, srcfile = NULL)[[1L]] - - # construct map between source strings, replaced strings - map <- as.character(parse(text = strings)) - names(map) <- as.character(parse(text = replacements)) - - # convert to list - map <- as.list(map) - - # remap strings in object - remapped <- renv_json_remap(json, map) - - # evaluate - eval(remapped, envir = baseenv()) - - } - - renv_json_remap <- function(json, map) { - - # fix names - if (!is.null(names(json))) { - lhs <- match(names(json), names(map), nomatch = 0L) - rhs <- match(names(map), names(json), nomatch = 0L) - names(json)[rhs] <- map[lhs] - } - - # fix values - if (is.character(json)) - return(map[[json]] %||% json) - - # handle true, false, null - if (is.name(json)) { - text <- as.character(json) - if (text == "true") - return(TRUE) - else if (text == "false") - return(FALSE) - else if (text == "null") - return(NULL) - } - - # recurse - if (is.recursive(json)) { - for (i in seq_along(json)) { - json[i] <- list(renv_json_remap(json[[i]], map)) - } - } - - json - - } - - # load the renv profile, if any - renv_bootstrap_profile_load(project) - - # construct path to library root - root <- renv_bootstrap_library_root(project) - - # construct library prefix for platform - prefix <- renv_bootstrap_platform_prefix() - - # construct full libpath - libpath <- file.path(root, prefix) - - if (renv_bootstrap_in_rstudio()) { - # RStudio only updates console once .Rprofile is finished, so - # instead run code on sessionInit - setHook("rstudio.sessionInit", function(...) { - renv_bootstrap_exec(project, libpath, version) - renv_bootstrap_flush_console() - }) - } else { - renv_bootstrap_exec(project, libpath, version) - } - - invisible() - -}) diff --git a/performance-release-report/renv/settings.json b/performance-release-report/renv/settings.json deleted file mode 100644 index ffdbb3200f7..00000000000 --- a/performance-release-report/renv/settings.json +++ /dev/null @@ -1,19 +0,0 @@ -{ - "bioconductor.version": null, - "external.libraries": [], - "ignored.packages": [], - "package.dependency.fields": [ - "Imports", - "Depends", - "LinkingTo" - ], - "ppm.enabled": null, - "ppm.ignored.urls": [], - "r.version": null, - "snapshot.type": "implicit", - "use.cache": true, - "vcs.ignore.cellar": true, - "vcs.ignore.library": true, - "vcs.ignore.local": true, - "vcs.manage.ignores": true -}