From 4eeeafab5fb10c9b25ffe125438f1d5e46caf61d Mon Sep 17 00:00:00 2001
From: Roman Feldbauer <sci@feldbauer.org>
Date: Fri, 28 Feb 2020 16:02:38 +0100
Subject: [PATCH] MNT version 1.1.0 [ci skip]

---
 .gitignore          |  1 +
 README.md           |  2 +-
 deepnog/__init__.py |  2 +-
 doc/changelog.md    | 22 +++++++++++++++-------
 4 files changed, 18 insertions(+), 9 deletions(-)

diff --git a/.gitignore b/.gitignore
index b4914c8..df8bc6c 100644
--- a/.gitignore
+++ b/.gitignore
@@ -1,6 +1,7 @@
 .idea
 doc/latex
 out.csv
+new_pypi_release.bash
 
 # Byte-compiled / optimized / DLL files
 __pycache__/
diff --git a/README.md b/README.md
index e3b9dee..8c61d4a 100644
--- a/README.md
+++ b/README.md
@@ -22,7 +22,7 @@ DeepNOG is both faster and more accurate than assigning OGs with HMMER.
 
 The `deepnog` command line tool is written in Python 3.7+. 
 
-Current version: 1.0.4
+Current version: 1.1.0
 
 ## Installation guide
 
diff --git a/deepnog/__init__.py b/deepnog/__init__.py
index e67068e..a09c3b9 100644
--- a/deepnog/__init__.py
+++ b/deepnog/__init__.py
@@ -36,7 +36,7 @@
 # Dev branch marker is: 'X.Y.dev' or 'X.Y.devN' where N is an integer.
 # 'X.Y.dev0' is the canonical version of 'X.Y.dev'
 #
-__version__ = '1.0.4'
+__version__ = '1.1.0'
 
 __all__ = ['client',
            'dataset',
diff --git a/doc/changelog.md b/doc/changelog.md
index 5176d8c..2c5c297 100644
--- a/doc/changelog.md
+++ b/doc/changelog.md
@@ -1,6 +1,10 @@
 # Changelog
 
 ## [Next release]
+...
+
+
+## [1.1.0] - 2020-02-28
 
 ### Added
 - EggNOG5 root (tax 1) prediction
@@ -17,14 +21,17 @@
 - Fix error on very short amino acid sequences
 - Fix error on unrecognized symbols in sequences (stop codons etc.)
 - Fix multiprocess data loading from gzipped files
+- Fix type mismatch in deepencoding embedding layer (Windows only)
 
 ### Maintenance
 - Continuous integration on
-  - Travis (Linux, MacOS)
-  - AppVeyor (Windows)
-- Codecov coverage reports
-- LGTM code quality/security reports
-- Documentation on readthedocs
+  - [Travis](https://travis-ci.com/VarIr/deepnog/) (Linux, MacOS)
+  - [AppVeyor](https://ci.appveyor.com/project/VarIr/deepnog) (Windows)
+- [Codecov](https://codecov.io/gh/VarIr/deepnog/) coverage reports
+- [LGTM](https://lgtm.com/projects/g/VarIr/deepnog) code quality/security reports
+- Documentation on [ReadTheDocs](https://deepnog.readthedocs.io)
+- Upload to [PyPI](https://pypi.org/project/deepnog/), thus enabling
+  `$ pip install deepnog`.
 
 
 ## [1.0.0] - 2019-10-18
@@ -37,7 +44,8 @@ It already contains the following features:
 - CPU and GPU support
 - Runs on all major platforms (Linux, MacOS, Windows)
 
-[Next release]: https://github.com/VarIr/deepnog/compare/v1.0.0final...HEAD
-[1.0.0]:   https://github.com/VarIr/deepnog/releases/tag/v1.0.0final
+[Next release]: https://github.com/VarIr/deepnog/compare/v1.1.0...HEAD
+[1.1.0]: https://github.com/VarIr/deepnog/releases/tag/v1.1.0
+[1.0.0]: https://github.com/VarIr/deepnog/releases/tag/v1.0.0final
 
 [//]: # "Sections: Added, Fixed, Changed, Removed"