main.yml

# This is a basic workflow to help you get started with Actions

name: deepnog CI

# Controls when the action will run. 
on:
  # Triggers the workflow on push or pull request events but only for the master branch
  push:
    branches: [ master ]
  pull_request:
    branches: [ master ]

  # Allows you to run this workflow manually from the Actions tab
  workflow_dispatch:

# A workflow run is made up of one or more jobs that can run sequentially or in parallel
jobs:
  # This workflow contains a single job called "build"
  build:
    runs-on: ${{ matrix.os }}
    strategy:
      matrix:
        os: [ubuntu-latest, macos-latest]  # instead of runs-on
        python: [3.7, 3.8, 3.9]

    # Steps represent a sequence of tasks that will be executed as part of the job
    steps:
      # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it
      - uses: actions/checkout@v2

      - name: Set up Python
        uses: actions/setup-python@v2
        with:
          python-version: ${{ matrix.python }}

      - name: DEBUG workflow
        run: |
          echo ${{ runner.os }}
          echo ${{ matrix.python }}

      - name: Cache pip
        uses: actions/cache@v2
        with:
          path: ~/.cache/pip
          key: ${{ runner.os }}-${{ matrix.python }}-${{ hashFiles('setup.py') }}-${{ hashFiles('requirements/dev.txt') }}

      # Cache the complete Python environment (esp. for large pkgs like PyTorch)
      #- name: Cache Python
      #  uses: actions/cache@v2
      #  with:
      #    path: ${{ env.pythonLocation }}
      #    key: ${{ env.pythonLocation }}-${{ hashFiles('setup.py') }}-${{ hashFiles('requirements/dev.txt') }}

      # Cache the models
      - name: Cache DeepNOG models
        uses: actions/cache@v2
        with:
          path: $HOME/deepnog_data
          key: ${{ hashFiles('deepnog/config/deepnog_config.yml') }}

      - name: Install dependencies
        run: |
          export PATH=${PATH}:"/home/runner/.local/bin"
          python3 -m pip install --upgrade pip setuptools
          python3 -m pip install --upgrade --upgrade-strategy eager -r requirements/dev.txt
  
      - name: Install deepnog
        run: python3 -m pip install -e .

      - name: Lint with flake8
        run: |
          pip install flake8
          # stop the build if there are Python syntax errors or undefined names
          flake8 . --count --select=E9,F63,F7,F82 --show-source --statistics
          # exit-zero treats all errors as warnings. The GitHub editor is 127 chars wide
          flake8 . --count --exit-zero --max-complexity=10 --max-line-length=100 --statistics
  
      - name: Test with pytest
        run: |
          pip install pytest pytest-cov coverage codecov
          pytest deepnog/utils/tests/test_imports.py --hide-torch --cov
          pytest --cov=deepnog --cov-append
  
      - name: Coverage report
        run: codecov