fix: preserve Check options in schema statistics roundtrip (#1844) #3019
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name: CI Tests | |
on: | |
push: | |
branches: | |
- main | |
- dev | |
- bugfix | |
- "release/*" | |
pull_request: | |
branches: | |
- main | |
- dev | |
- ibis-dev | |
- bugfix | |
- "release/*" | |
env: | |
DEFAULT_PYTHON: 3.8 | |
CI: "true" | |
concurrency: | |
group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label || github.head_ref || github.ref }}' | |
cancel-in-progress: true | |
jobs: | |
lint: | |
name: Linters (${{ matrix.python-version }}) | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: true | |
matrix: | |
python-version: ["3.8", "3.9", "3.10", "3.11"] | |
defaults: | |
run: | |
shell: bash -l {0} | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- uses: actions/cache@v4 | |
with: | |
path: ~/.cache/pip # ubuntu location | |
key: ${{ runner.os }}-pip-${{ hashFiles('requirements-dev.txt') }} | |
restore-keys: | | |
${{ runner.os }}-pip- | |
- name: Install dependencies | |
run: | | |
python -m pip install nox pre_commit \ | |
mypy==0.982 \ | |
types-click \ | |
types-pytz \ | |
types-pyyaml \ | |
types-requests \ | |
types-setuptools | |
- name: Pip info | |
run: python -m pip list | |
- name: Check requirements | |
run: > | |
nox | |
-db virtualenv -r | |
--non-interactive | |
--python ${{ matrix.python-version }} | |
--session requirements-${{ matrix.python-version }} | |
- name: Sort Imports | |
run: pre-commit run isort --all-files | |
- name: Black | |
if: always() | |
run: pre-commit run black --all-files | |
- name: Pylint | |
if: always() | |
run: pre-commit run pylint --all-files | |
- name: Mypy Type Checking | |
if: always() | |
run: pre-commit run mypy --all-files | |
tests: | |
name: > | |
CI Core Tests (${{ matrix.python-version }}, ${{ matrix.os }}, pandas-${{ matrix.pandas-version }}, pydantic-${{ matrix.pydantic-version }}) | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
shell: pwsh | |
env: | |
PYTHONUTF8: 1 | |
NOX_FLAGS: -v --no-install --no-venv --non-interactive | |
PYTEST_FLAGS: --cov=pandera --cov-report=term-missing --cov-report=xml --cov-append | |
HYPOTHESIS_FLAGS: -n=auto -q --hypothesis-profile=ci | |
strategy: | |
fail-fast: true | |
matrix: | |
os: | |
- ubuntu-latest | |
- windows-latest | |
- macos-13 | |
# - macos-latest # see: https://github.com/actions/setup-python/issues/696 | |
python-version: ["3.8", "3.9", "3.10", "3.11"] | |
pandas-version: ["1.5.3", "2.2.2"] | |
pydantic-version: ["1.10.11", "2.3.0"] | |
include: | |
- os: ubuntu-latest | |
pip-cache: ~/.cache/pip | |
# - os: macos-latest | |
# pip-cache: ~/Library/Caches/pip | |
- os: macos-13 | |
pip-cache: ~/Library/Caches/pip | |
- os: windows-latest | |
pip-cache: ~/AppData/Local/pip/Cache | |
exclude: | |
- python-version: "3.8" | |
pandas-version: "2.2.2" | |
- python-version: "3.11" | |
pandas-version: "1.5.3" | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Cache pip | |
uses: actions/cache@v4 | |
with: | |
path: ${{ matrix.pip-cache }} | |
key: ${{ runner.os }}-pip-${{ hashFiles('requirements.in') }} | |
restore-keys: | | |
${{ runner.os }}-pip- | |
- name: Install deps | |
run: | | |
pip install uv | |
uv pip install --system -r requirements.in | |
- run: | | |
pip list | |
printenv | sort | |
- name: Unit Tests - Core | |
run: nox ${{ env.NOX_FLAGS }} --session "tests(extra='core', pydantic='${{ matrix.pydantic-version }}', python='${{ matrix.python-version }}', pandas='${{ matrix.pandas-version }}')" | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v4 | |
# - name: Check Docstrings | |
# if: ${{ matrix.os != 'windows-latest' && matrix.python-version == '3.11' && matrix.pandas-version == '2.2.2' }} | |
# run: nox ${{ env.NOX_FLAGS }} --session doctests | |
# - name: Check Docs | |
# if: ${{ matrix.os != 'windows-latest' && matrix.python-version == '3.11' && matrix.pydantic-version == '2.2.2' }} | |
# run: nox ${{ env.NOX_FLAGS }} --session docs | |
extras-tests: | |
name: > | |
CI Extras Tests: ${{ matrix.extra }} (${{ matrix.python-version }}, ${{ matrix.os }}, pandas-${{ matrix.pandas-version }}, pydantic-${{ matrix.pydantic-version }}, polars-${{ matrix.polars-version }}) | |
runs-on: ${{ matrix.os }} | |
defaults: | |
run: | |
shell: pwsh | |
env: | |
PYTHONUTF8: 1 | |
NOX_FLAGS: -v --no-install --no-venv --non-interactive | |
PYTEST_FLAGS: --cov=pandera --cov-report=term-missing --cov-report=xml --cov-append | |
HYPOTHESIS_FLAGS: -n=auto -q --hypothesis-profile=ci | |
strategy: | |
fail-fast: true | |
matrix: | |
os: | |
- ubuntu-latest | |
- windows-latest | |
- macos-13 | |
# - macos-latest # see: https://github.com/actions/setup-python/issues/696 | |
python-version: ["3.8", "3.9", "3.10", "3.11"] | |
pandas-version: ["2.2.2"] | |
pydantic-version: ["2.3.0"] | |
polars-version: ["0.20.31", "1.2.0"] | |
extra: | |
- hypotheses | |
- io | |
- mypy | |
- strategies | |
- fastapi | |
- geopandas | |
- dask | |
- polars | |
- pyspark | |
- modin-dask | |
- modin-ray | |
include: | |
- os: ubuntu-latest | |
pip-cache: ~/.cache/pip | |
# - os: macos-latest | |
# pip-cache: ~/Library/Caches/pip | |
- os: macos-13 | |
pip-cache: ~/Library/Caches/pip | |
- os: windows-latest | |
pip-cache: ~/AppData/Local/pip/Cache | |
exclude: | |
- python-version: "3.8" | |
pandas-version: "2.2.2" | |
- python-version: "3.11" | |
pandas-version: "1.5.3" | |
# mypy tests hang on windows | |
- extra: mypy | |
os: windows-latest | |
- extra: modin-ray | |
os: windows-latest | |
- extra: hypotheses | |
polars-version: "0.20.31" | |
- extra: io | |
polars-version: "0.20.31" | |
- extra: mypy | |
polars-version: "0.20.31" | |
- extra: strategies | |
polars-version: "0.20.31" | |
- extra: fastapi | |
polars-version: "0.20.31" | |
- extra: geopandas | |
polars-version: "0.20.31" | |
- extra: dask | |
polars-version: "0.20.31" | |
- extra: pyspark | |
polars-version: "0.20.31" | |
- extra: modin-dask | |
polars-version: "0.20.31" | |
- extra: modin-ray | |
polars-version: "0.20.31" | |
steps: | |
- uses: actions/checkout@v4 | |
- name: Set up Python ${{ matrix.python-version }} | |
uses: actions/setup-python@v5 | |
with: | |
python-version: ${{ matrix.python-version }} | |
- name: Cache pip | |
uses: actions/cache@v4 | |
with: | |
path: ${{ matrix.pip-cache }} | |
key: ${{ runner.os }}-pip-${{ hashFiles('requirements-dev.txt') }} | |
restore-keys: | | |
${{ runner.os }}-pip- | |
- name: Install deps | |
shell: bash | |
# install numpy<2 for all extras. It seems to effects most packages in | |
# the ecosystem. | |
# install openjdk for pyspark extra. | |
run: | | |
pip install uv | |
uv pip install --system -r requirements.in | |
uv pip install --system --force-reinstall "polars==${{ matrix.polars-version }}"; | |
uv pip install --system --force-reinstall "numpy<2.0.0"; | |
uv pip install --system install-jdk==1.1.0 | |
export JAVA_HOME=$(python -c "import jdk; print(jdk.install('11', vendor='temurin'))") | |
- run: | | |
pip list | |
printenv | sort | |
- name: Unit Tests - ${{ matrix.extra }} | |
run: nox ${{ env.NOX_FLAGS }} --session "tests(extra='${{ matrix.extra }}', pydantic='${{ matrix.pydantic-version }}', python='${{ matrix.python-version }}', pandas='${{ matrix.pandas-version }}')" | |
- name: Upload coverage to Codecov | |
uses: codecov/codecov-action@v4 |