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Midterms blogpost #7

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brainstorm opened this issue May 25, 2022 · 0 comments
Open

Midterms blogpost #7

brainstorm opened this issue May 25, 2022 · 0 comments
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benchmarking Measure performance documentation Improvements or additions to documentation serde Serialization/Deserialization

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brainstorm commented May 25, 2022

To be actioned preferably before 28th July.

This blogpost should contain a summarised report on both benchmarking and serde:

  1. Performance baseline metrics about Noodles (issue Baseline benchmarking for Noodles #6).
  2. How flexible is our internal/intermediate data representation? Did our plan survive reality or some caveats were insurmountable? Where there any tweaks needed to be done per-format or in general?
  3. What are the different runtimes and filesizes of input/output format(s) conversion(s)?
  4. What are the performance differences and access patterns of querying the original input format vs the output one(s) for a specific bioinformatics task?

The results will be written in Markdown and published on @umccr blog, so a pullrequest should be done against this repo, see other blogpost for examples: https://github.com/umccr-svc/site/tree/master/content/post

@brainstorm brainstorm added documentation Improvements or additions to documentation serde Serialization/Deserialization benchmarking Measure performance labels May 25, 2022
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