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add tests for chgres_cube.fd/program_setup.f90 read_setup_namelist() subroutine #296

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edwardhartnett opened this issue Feb 16, 2021 · 15 comments · Fixed by #457
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add tests for chgres_cube.fd/program_setup.f90 read_setup_namelist() subroutine #296

edwardhartnett opened this issue Feb 16, 2021 · 15 comments · Fixed by #457
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@edwardhartnett
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Seems like I need the read_namelist function to work for #256
@edwardhartnett edwardhartnett self-assigned this Feb 16, 2021
@edwardhartnett
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@GeorgeGayno-NOAA can I please have a working namelist file for the chgres_cube?

@GeorgeGayno-NOAA
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You can use this sample on Hera: /scratch2/NCEPDEV/stmp1/George.Gayno/namelist.for.ed

@edwardhartnett
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&config
  mosaic_file_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96/C96_mosaic.nc"
  fix_dir_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96/fix_sfc"
  orog_dir_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96"
  orog_files_target_grid="C96_oro_data.tile1.nc","C96_oro_data.tile2.nc","C96_oro_data.tile3.nc","C96_oro_data.tile4.nc","C96_oro_data.tile5.nc","C96_oro_data.tile6.nc"
  vcoord_file_target_grid="/scratch1/NCEPDEV/da/George.Gayno/ufs_utils.git/UFS_UTILS/reg_tests/chgres_cube/../../fix/fix_am/global_hyblev.l64.txt"
  data_dir_input_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/input_data/fv3.nemsio"
  atm_files_input_grid="gfs.t12z.atmf000.nemsio"
  sfc_files_input_grid="gfs.t12z.sfcf000.nemsio"
  cycle_mon=07
  cycle_day=04
  cycle_hour=12
  convert_atm=.true.
  convert_sfc=.true.
  convert_nst=.true.
  input_type="gaussian_nemsio"
  tracers="sphum","liq_wat","o3mr","ice_wat","rainwat","snowwat","graupel"
  tracers_input="spfh","clwmr","o3mr","icmr","rwmr","snmr","grle"
  regional=0
  halo_bndy=0
  halo_blend=0
 /

@edwardhartnett
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@GeorgeGayno-NOAA I need a namelist that has grib input as well, so I can test the read_varmap() subroutine. Can you post the contents of such a namelist here?

Also, if there are other valid sorts of namelists, post the contents of a sample from each of the valid input choices, and I will add tests for them.

@GeorgeGayno-NOAA
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Each namelist has slightly different entries based on the input data source. I will cut and paste samples of each to this issue.

@GeorgeGayno-NOAA
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Sample namelist when using FV3 tiled history data as input:

 &config
  mosaic_file_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C192/C192_mosaic.nc"
  fix_dir_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C192/fix_sfc"
  orog_dir_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C192"
  orog_files_target_grid="C192_oro_data.tile1.nc","C192_oro_data.tile2.nc","C192_oro_data.tile3.nc","C192_oro_data.tile4.nc","C192_oro_data.tile5.nc","C192_oro_data.tile6.nc"
  vcoord_file_target_grid="/scratch1/NCEPDEV/da/George.Gayno/ufs_utils.git/UFS_UTILS/reg_tests/chgres_cube/../../fix/fix_am/global_hyblev.l64.txt"
  mosaic_file_input_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96/C96_mosaic.nc"
  orog_dir_input_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96"
  orog_files_input_grid="C96_oro_data.tile1.nc","C96_oro_data.tile2.nc","C96_oro_data.tile3.nc","C96_oro_data.tile4.nc","C96_oro_data.tile5.nc","C96_oro_data.tile6.nc"
  data_dir_input_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/input_data/fv3.history"
  atm_files_input_grid="dynf000.tile1.nc","dynf000.tile2.nc","dynf000.tile3.nc","dynf000.tile4.nc","dynf000.tile5.nc","dynf000.tile6.nc"
  sfc_files_input_grid="phyf000.tile1.nc","phyf000.tile2.nc","phyf000.tile3.nc","phyf000.tile4.nc","phyf000.tile5.nc","phyf000.tile6.nc"
  cycle_mon=10
  cycle_day=03
  cycle_hour=00
  convert_atm=.true.
  convert_sfc=.true.
  convert_nst=.true.
  input_type="history"
  tracers="sphum","liq_wat","o3mr"
  tracers_input="spfh","clwmr","o3mr"
  regional=0
  halo_bndy=0
  halo_blend=0
 /

@GeorgeGayno-NOAA
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Sample namelist when using GFS GRIB2 data as input:

 &config
  mosaic_file_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C192/C192_mosaic.nc"
  fix_dir_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C192/fix_sfc"
  orog_dir_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C192"
  orog_files_target_grid="C192_oro_data.tile1.nc","C192_oro_data.tile2.nc","C192_oro_data.tile3.nc","C192_oro_data.tile4.nc","C192_oro_data.tile5.nc","C192_oro_data.tile6.nc"
  vcoord_file_target_grid="/scratch1/NCEPDEV/da/George.Gayno/ufs_utils.git/UFS_UTILS/reg_tests/chgres_cube/../../fix/fix_am/global_hyblev.l65.txt"
  data_dir_input_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/input_data/gfs.grib2"
  grib2_file_input_grid="gfs.t00z.pgrb2.0p50.f000"
  varmap_file="/scratch1/NCEPDEV/da/George.Gayno/ufs_utils.git/UFS_UTILS/reg_tests/chgres_cube/../../parm/varmap_tables/GFSphys_var_map.txt"
  cycle_mon=11
  cycle_day=04
  cycle_hour=00
  convert_atm=.true.
  convert_sfc=.true.
  convert_nst=.false.
  input_type="grib2"
  tracers="sphum","liq_wat","o3mr","ice_wat","rainwat","snowwat","graupel"
  tracers_input="spfh","clwmr","o3mr","icmr","rwmr","snmr","grle"
  regional=0
  halo_bndy=0
  halo_blend=0
 /

@GeorgeGayno-NOAA
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Sample namelist when using FV3 nemsio data as input:

 &config
  mosaic_file_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96/C96_mosaic.nc"
  fix_dir_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96/fix_sfc"
  orog_dir_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96"
  orog_files_target_grid="C96_oro_data.tile1.nc","C96_oro_data.tile2.nc","C96_oro_data.tile3.nc","C96_oro_data.tile4.nc","C96_oro_data.tile5.nc","C96_oro_data.tile6.nc"
  vcoord_file_target_grid="/scratch1/NCEPDEV/da/George.Gayno/ufs_utils.git/UFS_UTILS/reg_tests/chgres_cube/../../fix/fix_am/global_hyblev.l64.txt"
  data_dir_input_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/input_data/fv3.nemsio"
  atm_files_input_grid="gfs.t12z.atmf000.nemsio"
  sfc_files_input_grid="gfs.t12z.sfcf000.nemsio"
  cycle_mon=07
  cycle_day=04
  cycle_hour=12
  convert_atm=.true.
  convert_sfc=.true.
  convert_nst=.true.
  input_type="gaussian_nemsio"
  tracers="sphum","liq_wat","o3mr","ice_wat","rainwat","snowwat","graupel"
  tracers_input="spfh","clwmr","o3mr","icmr","rwmr","snmr","grle"
  regional=0
  halo_bndy=0
  halo_blend=0
 /

@GeorgeGayno-NOAA
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Sample namelist when using FV3 netcdf data as input:

 &config
  mosaic_file_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96/C96_mosaic.nc"
  fix_dir_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96/fix_sfc"
  orog_dir_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96"
  orog_files_target_grid="C96_oro_data.tile1.nc","C96_oro_data.tile2.nc","C96_oro_data.tile3.nc","C96_oro_data.tile4.nc","C96_oro_data.tile5.nc","C96_oro_data.tile6.nc"
  vcoord_file_target_grid="/scratch1/NCEPDEV/da/George.Gayno/ufs_utils.git/UFS_UTILS/reg_tests/chgres_cube/../../fix/fix_am/global_hyblev.l64.txt"
  data_dir_input_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/input_data/fv3.netcdf"
  atm_files_input_grid="gfs.t00z.atmf000.nc"
  sfc_files_input_grid="gfs.t00z.sfcf000.nc"
  cycle_mon=02
  cycle_day=02
  cycle_hour=00
  convert_atm=.true.
  convert_sfc=.true.
  convert_nst=.true.
  input_type="gaussian_netcdf"
  tracers="sphum","liq_wat","o3mr","ice_wat","rainwat","snowwat","graupel"
  tracers_input="spfh","clwmr","o3mr","icmr","rwmr","snmr","grle"
  regional=0
  halo_bndy=0
  halo_blend=0
 /

@GeorgeGayno-NOAA
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Sample namelist when using FV3 tiled warm restart files as input:

 &config
  mosaic_file_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96/C96_mosaic.nc"
  fix_dir_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96/fix_sfc"
  orog_dir_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96"
  orog_files_target_grid="C96_oro_data.tile1.nc","C96_oro_data.tile2.nc","C96_oro_data.tile3.nc","C96_oro_data.tile4.nc","C96_oro_data.tile5.nc","C96_oro_data.tile6.nc"
  vcoord_file_target_grid="/scratch1/NCEPDEV/da/George.Gayno/ufs_utils.git/UFS_UTILS/reg_tests/chgres_cube/../../fix/fix_am/global_hyblev.l64.txt"
  mosaic_file_input_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C384/C384_mosaic.nc"
  orog_dir_input_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C384"
  orog_files_input_grid="C384_oro_data.tile1.nc","C384_oro_data.tile2.nc","C384_oro_data.tile3.nc","C384_oro_data.tile4.nc","C384_oro_data.tile5.nc","C384_oro_data.tile6.nc"
  data_dir_input_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/input_data/fv3.restart"
  atm_core_files_input_grid="20190706.120000.fv_core.res.tile1.nc","20190706.120000.fv_core.res.tile2.nc","20190706.120000.fv_core.res.tile3.nc","20190706.120000.fv_core.res.tile4.nc","20190706.120000.fv_core.res.tile5.nc","20190706.120000.fv_core.res.tile6.nc","20190706.120000.fv_core.res.nc"
  atm_tracer_files_input_grid="20190706.120000.fv_tracer.res.tile1.nc","20190706.120000.fv_tracer.res.tile2.nc","20190706.120000.fv_tracer.res.tile3.nc","20190706.120000.fv_tracer.res.tile4.nc","20190706.120000.fv_tracer.res.tile5.nc","20190706.120000.fv_tracer.res.tile6.nc"
  sfc_files_input_grid="20190706.120000.sfc_data.tile1.nc","20190706.120000.sfc_data.tile2.nc","20190706.120000.sfc_data.tile3.nc","20190706.120000.sfc_data.tile4.nc","20190706.120000.sfc_data.tile5.nc","20190706.120000.sfc_data.tile6.nc"
  cycle_mon=07
  cycle_day=06
  cycle_hour=12
  convert_atm=.true.
  convert_sfc=.true.
  convert_nst=.true.
  input_type="restart"
  tracers="sphum","liq_wat","o3mr","ice_wat","rainwat","snowwat","graupel"
  tracers_input="sphum","liq_wat","o3mr","ice_wat","rainwat","snowwat","graupel"
  regional=0
  halo_bndy=0
  halo_blend=0
 /

@GeorgeGayno-NOAA
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Sample namelist when using spectral GFS nemsio data as input:

 &config
  mosaic_file_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96/C96_mosaic.nc"
  fix_dir_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96/fix_sfc"
  orog_dir_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96"
  orog_files_target_grid="C96_oro_data.tile1.nc","C96_oro_data.tile2.nc","C96_oro_data.tile3.nc","C96_oro_data.tile4.nc","C96_oro_data.tile5.nc","C96_oro_data.tile6.nc"
  vcoord_file_target_grid="/scratch1/NCEPDEV/da/George.Gayno/ufs_utils.git/UFS_UTILS/reg_tests/chgres_cube/../../fix/fix_am/global_hyblev.l64.txt"
  data_dir_input_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/input_data/gfs.nemsio"
  atm_files_input_grid="gfnanl.gdas.2017071700"
  sfc_files_input_grid="sfnanl.gdas.2017071700"
  nst_files_input_grid="nsnanl.gdas.2017071700"
  cycle_mon=07
  cycle_day=17
  cycle_hour=00
  convert_atm=.true.
  convert_sfc=.true.
  convert_nst=.true.
  input_type="gfs_gaussian_nemsio"
  tracers="sphum","liq_wat","o3mr"
  tracers_input="spfh","clwmr","o3mr"
  regional=0
  halo_bndy=0
  halo_blend=0
 /

@GeorgeGayno-NOAA
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Sample namelist when using spectral GFS sigio format:

 &config
  mosaic_file_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96/C96_mosaic.nc"
  fix_dir_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96/fix_sfc"
  orog_dir_target_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/fix/C96"
  orog_files_target_grid="C96_oro_data.tile1.nc","C96_oro_data.tile2.nc","C96_oro_data.tile3.nc","C96_oro_data.tile4.nc","C96_oro_data.tile5.nc","C96_oro_data.tile6.nc"
  vcoord_file_target_grid="/scratch1/NCEPDEV/da/George.Gayno/ufs_utils.git/UFS_UTILS/reg_tests/chgres_cube/../../fix/fix_am/global_hyblev.l64.txt"
  data_dir_input_grid="/scratch1/NCEPDEV/da/George.Gayno/noscrub/reg_tests/chgres_cube/input_data/gfs.sigio"
  atm_files_input_grid="gdas.t00z.sanl"
  sfc_files_input_grid="gdas.t00z.sfcanl"
  cycle_mon=07
  cycle_day=17
  cycle_hour=00
  convert_atm=.true.
  convert_sfc=.true.
  convert_nst=.false.
  input_type="gfs_sigio"
  tracers="sphum","o3mr","liq_wat"
  tracers_input="spfh","o3mr","clwmr"
  regional=0
  halo_bndy=0
  halo_blend=0
 /

@GeorgeGayno-NOAA
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That should cover all the bases.

@edwardhartnett edwardhartnett mentioned this issue Feb 25, 2021
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@edwardhartnett edwardhartnett mentioned this issue Mar 10, 2021
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@GeorgeGayno-NOAA
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If you want to run these MPI tests on WCOSS-Dell, here is what I do:

#BSUB -x                 # run not shared
#BSUB -n 6               # total tasks
#BSUB -R span[ptile=6]   # tasks per node
#BSUB -R affinity[core(1):distribute=balance]

mpirun chgres_cube.exe

@edwardhartnett
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I will try and let you know...

@edwardhartnett edwardhartnett changed the title add tests for chgres_cube.fd/program_setup.f90 add tests for chgres_cube.fd/program_setup.f90 read_setup_namelist() subroutine Apr 23, 2021
This was referenced Apr 23, 2021
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