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1. nf-UnO nf-UnO Public

   metagenomics pipeline supporting The UnO Project for identifying pathogens in common across outbreak samples

   Nextflow 2

2. MIDAS2 MIDAS2 Public

   Forked from czbiohub-sf/MIDAS

   Metagenomic Intra-Species Diversity Analysis 2

   Python

3. HMAS-QC-Pipeline_UnO HMAS-QC-Pipeline_UnO Public

   Forked from ncezid-biome/HMAS-QC-Pipeline

   A pipeline for performing quality control on HMAS data, in preparation for downstream MLST-like or AMR-like analyses.

   Python

4. tautyping tautyping Public

   Forked from hseabolt/tautyping

   This pipeline identifies genes or genomic segments which most closely resemble the genome-wide phylogenetic signal of a given organism using the Kendall Tau rank correlation statistic

   Nextflow

5. modules modules Public

   Forked from nf-core/modules

   Repository to host tool-specific module files for the Nextflow DSL2 community!

   Nextflow

6. UnO_primers UnO_primers Public

   scripts used to parse potential UnO primers

   Python