Be sure your working directory is set to the location of your data.
To use this tool, type this in R:
> source('uBiomeCompare.R')
If your samples are kept in the following CSV files:
may<-read.csv("sprague-uBiomeMay2014.csv")
jun<-read.csv("sprague-uBiomeJun2014.csv")
Then run the following function in R:
uBiome_sample_unique(may,jun,"species")
and R will return a list of ways in which the two samples are unique. For example:
missing.count_norm missing.tax_name
1 74140 Bacteroides plebeius
2 9914 Parabacteroides merdae
3 8295 Bifidobacterium tsurumiense
4 6906 Roseburia sp. 11SE38
5 4452 Bacteroidales bacterium ph8
6 3977 Bilophila wadsworthia
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