From 663db4b74e2a5bb7d39b092732e5a09135980f40 Mon Sep 17 00:00:00 2001 From: Jane Hawkey <5591817+jhawkey@users.noreply.github.com> Date: Mon, 12 Dec 2022 09:09:48 +0100 Subject: [PATCH] Update README.md --- README.md | 8 ++++++-- 1 file changed, 6 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 11f7550..c7c2a53 100644 --- a/README.md +++ b/README.md @@ -24,9 +24,13 @@ The GenoTyphi scheme is also available via the online analysis platform [Pathoge #### Install Mykrobe: +From bioconda: ``` -bioconda - conda install -c bioconda mykrobe -from source - pip3 install . && mykrobe panels update_metadata && mykrobe panels update_species all +conda install -c bioconda mykrobe +``` +From source (after downloading mykrobe, from the mykrobe directory): +``` +pip3 install . && mykrobe panels update_metadata && mykrobe panels update_species all ``` #### Run Mykrobe on fastq file/s for a given genome: