From 55e42c3dea87d3c1e3e9dfde28df637e88d6bd39 Mon Sep 17 00:00:00 2001 From: Pavel Anpin Date: Mon, 2 Dec 2024 22:17:10 -0300 Subject: [PATCH] Fix ci (#563) * chore: bumpup CI * chore: update locks * update flake inputs and poetry locks * typescript: 1.0.15 -> 1.0.21 * bash: fix missing kernel * c: fix missing kernel * zsh: fix missing kernel * python: fix stable kernel * haskell: attempt at fixing the build * julia: fix revision * haskell: make compiler happy * haskell: fork ihaskell kernel derivation * elm: fix kernel * refacor poetry overrides * postgresql: fix missing kernel * scala: 0.14.0-RC7 -> 0.14.0-RC8 * fix poetry overrides for template * ci: workaround for no space left on device * chore: bump flake inputs * ci: fix template test * typescript: override missing nodejs-16_x * chore: remove lib.mdDoc lib.mdDoc was removed from nixpkgs https://github.com/NixOS/nixpkgs/pull/237557 * python: fix broken setuptools * ci: override template input instead of sed substitution * julia: use latest kernel 1.9.4 -> 1.11.1 --------- Co-authored-by: guangtao --- .github/actions/common-setup/action.yml | 4 +- .github/workflows/ci.yml | 11 +- .github/workflows/update-flake-lock.yml | 2 +- .github/workflows/update-poetry-lock.yml | 2 +- examples/elm/minimal/test.py | 2 +- examples/julia/minimal/default.nix | 14 +- examples/python/stable/default.nix | 7 +- flake.lock | 237 +- flake.nix | 15 +- lib/jupyter.nix | 2 +- lib/overrides.nix | 65 +- modules/default.nix | 2 +- modules/kernel.nix | 12 +- modules/kernels/bash/poetry.lock | 779 +- modules/kernels/bash/pyproject.toml | 5 +- modules/kernels/c/poetry.lock | 730 +- modules/kernels/c/pyproject.toml | 6 +- modules/kernels/dotnet/default.nix | 4 +- modules/kernels/elm/overrides.nix | 45 +- modules/kernels/elm/poetry.lock | 1816 ++- modules/kernels/elm/pyproject.toml | 5 +- modules/kernels/go/default.nix | 2 +- modules/kernels/haskell/default.nix | 103 +- modules/kernels/haskell/release.nix | 116 + modules/kernels/javascript/default.nix | 2 +- modules/kernels/julia/default.nix | 16 +- modules/kernels/julia/logo-LICENSE.md | 2 +- modules/kernels/nix/default.nix | 4 +- modules/kernels/ocaml/default.nix | 8 +- modules/kernels/postgres/pyproject.toml | 5 +- modules/kernels/python/overrides.nix | 74 +- modules/kernels/python/poetry.lock | 742 +- modules/kernels/python/pyproject.toml | 4 +- modules/kernels/r/default.nix | 8 +- modules/kernels/rust/default.nix | 6 +- modules/kernels/scala/default.nix | 18 +- modules/kernels/typescript/default.nix | 18 +- modules/kernels/typescript/package-lock.json | 12829 +++++------------ modules/kernels/zsh/poetry.lock | 730 +- modules/kernels/zsh/pyproject.toml | 4 +- modules/poetry.nix | 2 +- modules/types/nixpkgs.nix | 2 +- modules/types/poetry.nix | 18 +- poetry.lock | 1717 +-- pyproject.toml | 5 +- 45 files changed, 7610 insertions(+), 12590 deletions(-) create mode 100644 modules/kernels/haskell/release.nix diff --git a/.github/actions/common-setup/action.yml b/.github/actions/common-setup/action.yml index a197f35c..eecf4629 100644 --- a/.github/actions/common-setup/action.yml +++ b/.github/actions/common-setup/action.yml @@ -11,12 +11,12 @@ runs: steps: - name: Installing Nix - uses: cachix/install-nix-action@v23 + uses: cachix/install-nix-action@v30 with: nix_path: nixpkgs=channel:nixpkgs-unstable github_access_token: ${{ inputs.SECRET_GITHUB_TOKEN }} - - uses: cachix/cachix-action@v12 + - uses: cachix/cachix-action@v15 with: name: tweag-jupyter authToken: '${{ inputs.CACHIX_AUTH_TOKEN }}' diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index f15e5836..5ffb1d5b 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -82,6 +82,14 @@ jobs: with: fetch-depth: 0 + # Workaround for System.IO.IOException: No space left on device + # https://github.com/actions/runner-images/issues/10699#issuecomment-2402475892 + - name: Clean up disk space + run: | + sudo rm -rf /usr/share/dotnet + sudo rm -rf /usr/local/lib/android + sudo rm -rf /opt/ghc + - name: Setup uses: ./.github/actions/common-setup with: @@ -176,8 +184,7 @@ jobs: - name: Build run: | pushd ./example - sed -i -e "s|github:tweag/jupyterWith|path:$PWD/../repo|" flake.nix - nix build + nix build --override-input jupyenv ../repo --show-trace -L popd # TODO this should not be dependent on the example kernels tests as the kernel names are different diff --git a/.github/workflows/update-flake-lock.yml b/.github/workflows/update-flake-lock.yml index d0492620..4debc3c4 100644 --- a/.github/workflows/update-flake-lock.yml +++ b/.github/workflows/update-flake-lock.yml @@ -19,4 +19,4 @@ jobs: GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} - name: Update flake.lock - uses: DeterminateSystems/update-flake-lock@v17 + uses: DeterminateSystems/update-flake-lock@v24 diff --git a/.github/workflows/update-poetry-lock.yml b/.github/workflows/update-poetry-lock.yml index 82b42172..ce48b808 100644 --- a/.github/workflows/update-poetry-lock.yml +++ b/.github/workflows/update-poetry-lock.yml @@ -21,7 +21,7 @@ jobs: run: "nix run .#update-poetry-lock" - name: Create Pull Request - uses: peter-evans/create-pull-request@v4 + uses: peter-evans/create-pull-request@v7 with: commit-message: Update poetry lock files title: Update poetry lock files diff --git a/examples/elm/minimal/test.py b/examples/elm/minimal/test.py index b574feae..e535579c 100644 --- a/examples/elm/minimal/test.py +++ b/examples/elm/minimal/test.py @@ -7,7 +7,7 @@ def test_nb(tb): result = tb.execute_cell(0)["outputs"][0]["data"] assert "text/html" in result - assert "elm-div" in result["text/html"] + assert "elm-div-2" in result["text/html"] if __name__ == '__main__': test_nb() diff --git a/examples/julia/minimal/default.nix b/examples/julia/minimal/default.nix index cd540dbc..1c3c8aae 100644 --- a/examples/julia/minimal/default.nix +++ b/examples/julia/minimal/default.nix @@ -2,13 +2,13 @@ kernel.julia.minimal-example = { enable = true; override = { - augmentedRegistry = pkgs.fetchFromGitHub { - owner = "CodeDownIO"; - repo = "General"; - rev = "840f93574326361e2614fc5a4c2413f07840215a"; - sha256 = "sha256-UedaTpQwkuSZ/o4kLX/Jg8eDnL5IFI4XfYsJMRwBAKE="; - }; - # Precompile = true; + # augmentedRegistry = pkgs.fetchFromGitHub { + # owner = "CodeDownIO"; + # repo = "General"; + # rev = "840f93574326361e2614fc5a4c2413f07840215a"; + # sha256 = "sha256-UedaTpQwkuSZ/o4kLX/Jg8eDnL5IFI4XfYsJMRwBAKE="; + # }; + # precompile = true; }; extraJuliaPackages = [ "Plots" diff --git a/examples/python/stable/default.nix b/examples/python/stable/default.nix index 3e52f84b..b09e983a 100644 --- a/examples/python/stable/default.nix +++ b/examples/python/stable/default.nix @@ -5,6 +5,11 @@ }: { kernel.python.stable-example = { enable = true; - nixpkgs = self.inputs.nixpkgs-stable; + nixpkgs = import self.inputs.nixpkgs-stable { + inherit system; + overlays = [ + self.inputs.poetry2nix.overlays.default + ]; + }; }; } diff --git a/flake.lock b/flake.lock index 9cac35b0..dcc0da77 100644 --- a/flake.lock +++ b/flake.lock @@ -3,11 +3,11 @@ "flake-compat": { "flake": false, "locked": { - "lastModified": 1696426674, - "narHash": "sha256-kvjfFW7WAETZlt09AgDn1MrtKzP7t90Vf7vypd3OL1U=", + "lastModified": 1732722421, + "narHash": "sha256-HRJ/18p+WoXpWJkcdsk9St5ZiukCqSDgbOGFa8Okehg=", "owner": "edolstra", "repo": "flake-compat", - "rev": "0f9255e01c2351cc7d116c072cb317785dd33b33", + "rev": "9ed2ac151eada2306ca8c418ebd97807bb08f6ac", "type": "github" }, "original": { @@ -19,11 +19,11 @@ "flake-compat_2": { "flake": false, "locked": { - "lastModified": 1627913399, - "narHash": "sha256-hY8g6H2KFL8ownSiFeMOjwPC8P0ueXpCVEbxgda3pko=", + "lastModified": 1696426674, + "narHash": "sha256-kvjfFW7WAETZlt09AgDn1MrtKzP7t90Vf7vypd3OL1U=", "owner": "edolstra", "repo": "flake-compat", - "rev": "12c64ca55c1014cdc1b16ed5a804aa8576601ff2", + "rev": "0f9255e01c2351cc7d116c072cb317785dd33b33", "type": "github" }, "original": { @@ -37,26 +37,11 @@ "systems": "systems" }, "locked": { - "lastModified": 1694529238, - "narHash": "sha256-zsNZZGTGnMOf9YpHKJqMSsa0dXbfmxeoJ7xHlrt+xmY=", - "owner": "numtide", - "repo": "flake-utils", - "rev": "ff7b65b44d01cf9ba6a71320833626af21126384", - "type": "github" - }, - "original": { - "owner": "numtide", - "repo": "flake-utils", - "type": "github" - } - }, - "flake-utils_2": { - "locked": { - "lastModified": 1629481132, - "narHash": "sha256-JHgasjPR0/J1J3DRm4KxM4zTyAj4IOJY8vIl75v/kPI=", + "lastModified": 1731533236, + "narHash": "sha256-l0KFg5HjrsfsO/JpG+r7fRrqm12kzFHyUHqHCVpMMbI=", "owner": "numtide", "repo": "flake-utils", - "rev": "997f7efcb746a9c140ce1f13c72263189225f482", + "rev": "11707dc2f618dd54ca8739b309ec4fc024de578b", "type": "github" }, "original": { @@ -66,22 +51,6 @@ } }, "gitignore": { - "flake": false, - "locked": { - "lastModified": 1611672876, - "narHash": "sha256-qHu3uZ/o9jBHiA3MEKHJ06k7w4heOhA+4HCSIvflRxo=", - "owner": "hercules-ci", - "repo": "gitignore.nix", - "rev": "211907489e9f198594c0eb0ca9256a1949c9d412", - "type": "github" - }, - "original": { - "owner": "hercules-ci", - "repo": "gitignore.nix", - "type": "github" - } - }, - "gitignore_2": { "inputs": { "nixpkgs": [ "pre-commit-hooks", @@ -89,11 +58,11 @@ ] }, "locked": { - "lastModified": 1660459072, - "narHash": "sha256-8DFJjXG8zqoONA1vXtgeKXy68KdJL5UaXR8NtVMUbx8=", + "lastModified": 1709087332, + "narHash": "sha256-HG2cCnktfHsKV0s4XW83gU3F57gaTljL9KNSuG6bnQs=", "owner": "hercules-ci", "repo": "gitignore.nix", - "rev": "a20de23b925fd8264fd7fad6454652e142fd7f73", + "rev": "637db329424fd7e46cf4185293b9cc8c88c95394", "type": "github" }, "original": { @@ -105,17 +74,18 @@ "hls": { "inputs": { "flake-compat": "flake-compat_2", - "flake-utils": "flake-utils_2", - "gitignore": "gitignore", - "nixpkgs": "nixpkgs", - "pre-commit-hooks": "pre-commit-hooks" + "flake-utils": [ + "ihaskell", + "flake-utils" + ], + "nixpkgs": "nixpkgs" }, "locked": { - "lastModified": 1637213318, - "narHash": "sha256-ZgxPwV7t4DyGYP7aXoetq+JHtd73XlOV2fYSflQmOXw=", + "lastModified": 1732525669, + "narHash": "sha256-JTjkZOoDonda/EbIWXxPEr3hBVkVu2388XAxMWduKJQ=", "owner": "haskell", "repo": "haskell-language-server", - "rev": "311107eabbf0537e0c192b2c377d282505b4eff1", + "rev": "fea01358646a767980eb8645f7ef8878d83725fe", "type": "github" }, "original": { @@ -126,21 +96,24 @@ }, "ihaskell": { "inputs": { - "flake-compat": [], "flake-utils": [ "flake-utils" ], "hls": "hls", - "nixpkgs": [ - "nixpkgs" + "nix-filter": "nix-filter", + "nixpkgs24_11": [ + "nixpkgs-stable" + ], + "nixpkgsMaster": [ + "nixpkgs-master" ] }, "locked": { - "lastModified": 1692365546, - "narHash": "sha256-qn8TQezUbA66I7ASnfu0Ib5CWBFfYloKwFxn686VlMw=", + "lastModified": 1733054907, + "narHash": "sha256-vWd8sqQ2fBdlxqdpWAayS/PPeFf8BSVe1IRbqGFjwlI=", "owner": "ihaskell", "repo": "ihaskell", - "rev": "d7ad5d57ceb852a19a98266dfb53ec3b3441dda4", + "rev": "d896621edbf032a86fa85723911b0e75852402f2", "type": "github" }, "original": { @@ -152,11 +125,11 @@ "mirage-opam-overlays": { "flake": false, "locked": { - "lastModified": 1661959605, - "narHash": "sha256-CPTuhYML3F4J58flfp3ZbMNhkRkVFKmBEYBZY5tnQwA=", + "lastModified": 1710922379, + "narHash": "sha256-j4QREQDUf8oHOX7qg6wAOupgsNQoYlufxoPrgagD+pY=", "owner": "dune-universe", "repo": "mirage-opam-overlays", - "rev": "05f1c1823d891ce4d8adab91f5db3ac51d86dc0b", + "rev": "797cb363df3ff763c43c8fbec5cd44de2878757e", "type": "github" }, "original": { @@ -189,6 +162,21 @@ "type": "github" } }, + "nix-filter": { + "locked": { + "lastModified": 1731533336, + "narHash": "sha256-oRam5PS1vcrr5UPgALW0eo1m/5/pls27Z/pabHNy2Ms=", + "owner": "numtide", + "repo": "nix-filter", + "rev": "f7653272fd234696ae94229839a99b73c9ab7de0", + "type": "github" + }, + "original": { + "owner": "numtide", + "repo": "nix-filter", + "type": "github" + } + }, "nix-github-actions": { "inputs": { "nixpkgs": [ @@ -197,11 +185,11 @@ ] }, "locked": { - "lastModified": 1698974481, - "narHash": "sha256-yPncV9Ohdz1zPZxYHQf47S8S0VrnhV7nNhCawY46hDA=", + "lastModified": 1729742964, + "narHash": "sha256-B4mzTcQ0FZHdpeWcpDYPERtyjJd/NIuaQ9+BV1h+MpA=", "owner": "nix-community", "repo": "nix-github-actions", - "rev": "4bb5e752616262457bc7ca5882192a564c0472d2", + "rev": "e04df33f62cdcf93d73e9a04142464753a16db67", "type": "github" }, "original": { @@ -212,11 +200,11 @@ }, "nixpkgs": { "locked": { - "lastModified": 1630887066, - "narHash": "sha256-0ecIlrLsNIIa+zrNmzXXmbMBLZlmHU/aWFsa4bq99Hk=", + "lastModified": 1718149104, + "narHash": "sha256-Ds1QpobBX2yoUDx9ZruqVGJ/uQPgcXoYuobBguyKEh8=", "owner": "NixOS", "repo": "nixpkgs", - "rev": "5e47a07e9f2d7ed999f2c7943b0896f5f7321ca3", + "rev": "e913ae340076bbb73d9f4d3d065c2bca7caafb16", "type": "github" }, "original": { @@ -226,45 +214,61 @@ "type": "github" } }, + "nixpkgs-master": { + "locked": { + "lastModified": 1733152711, + "narHash": "sha256-bptm7zLlH9Q8Hxi0qBFhinYpKVkhrm0gGj9TARdT8z4=", + "owner": "nixos", + "repo": "nixpkgs", + "rev": "88196cc0760e55b11c71f80df5f14bf3f836563c", + "type": "github" + }, + "original": { + "owner": "nixos", + "ref": "master", + "repo": "nixpkgs", + "type": "github" + } + }, "nixpkgs-stable": { "locked": { - "lastModified": 1698288402, - "narHash": "sha256-jIIjApPdm+4yt8PglX8pUOexAdEiAax/DXW3S/Mb21E=", + "lastModified": 1732981179, + "narHash": "sha256-F7thesZPvAMSwjRu0K8uFshTk3ZZSNAsXTIFvXBT+34=", "owner": "nixos", "repo": "nixpkgs", - "rev": "60b9db998f71ea49e1a9c41824d09aa274be1344", + "rev": "62c435d93bf046a5396f3016472e8f7c8e2aed65", "type": "github" }, "original": { "owner": "nixos", - "ref": "nixos-23.05", + "ref": "nixos-24.11", "repo": "nixpkgs", "type": "github" } }, "nixpkgs-stable_2": { "locked": { - "lastModified": 1685801374, - "narHash": "sha256-otaSUoFEMM+LjBI1XL/xGB5ao6IwnZOXc47qhIgJe8U=", + "lastModified": 1730741070, + "narHash": "sha256-edm8WG19kWozJ/GqyYx2VjW99EdhjKwbY3ZwdlPAAlo=", "owner": "NixOS", "repo": "nixpkgs", - "rev": "c37ca420157f4abc31e26f436c1145f8951ff373", + "rev": "d063c1dd113c91ab27959ba540c0d9753409edf3", "type": "github" }, "original": { "owner": "NixOS", - "ref": "nixos-23.05", + "ref": "nixos-24.05", "repo": "nixpkgs", "type": "github" } }, "nixpkgs_2": { "locked": { - "lastModified": 1702938738, - "narHash": "sha256-O7Vb0xC9s4Dmgxj8APEpuuMj7HsLgPbpy1UKvNVJp7o=", + "lastModified": 1733064805, + "narHash": "sha256-7NbtSLfZO0q7MXPl5hzA0sbVJt6pWxxtGWbaVUDDmjs=", "owner": "nixos", "repo": "nixpkgs", - "rev": "dd8e82f3b4017b8faa52c2b1897a38d53c3c26cb", + "rev": "31d66ae40417bb13765b0ad75dd200400e98de84", "type": "github" }, "original": { @@ -277,17 +281,16 @@ "npmlock2nix": { "flake": false, "locked": { - "lastModified": 1668989938, - "narHash": "sha256-/IxdS0AiqSN0/VEOLnnfHyi4nP17yPrkhGf6KlXVwrc=", + "lastModified": 1673447413, + "narHash": "sha256-sJM82Sj8yfQYs9axEmGZ9Evzdv/kDcI9sddqJ45frrU=", "owner": "nix-community", "repo": "npmlock2nix", - "rev": "0ba0746d62974403daf717cded3f24c617622bc7", + "rev": "9197bbf397d76059a76310523d45df10d2e4ca81", "type": "github" }, "original": { "owner": "nix-community", "repo": "npmlock2nix", - "rev": "0ba0746d62974403daf717cded3f24c617622bc7", "type": "github" } }, @@ -306,11 +309,11 @@ "opam2json": "opam2json" }, "locked": { - "lastModified": 1695904678, - "narHash": "sha256-g4ZcyFsQdcDYgBOGKIwFTu050Yw2xvYHpKSLxlA9p2Q=", + "lastModified": 1732617437, + "narHash": "sha256-jj25fziYrES8Ix6HkfSiLzrN6MZjiwlHUxFSIuLRjgE=", "owner": "tweag", "repo": "opam-nix", - "rev": "d4a42c5ce58d4f0b07ee158867d085def0de33ce", + "rev": "ea8b9cb81fe94e1fc45c6376fcff15f17319c445", "type": "github" }, "original": { @@ -322,11 +325,11 @@ "opam-overlays": { "flake": false, "locked": { - "lastModified": 1654162756, - "narHash": "sha256-RV68fUK+O3zTx61iiHIoS0LvIk0E4voMp+0SwRg6G6c=", + "lastModified": 1726822209, + "narHash": "sha256-bwM18ydNT9fYq91xfn4gmS21q322NYrKwfq0ldG9GYw=", "owner": "dune-universe", "repo": "opam-overlays", - "rev": "c8f6ef0fc5272f254df4a971a47de7848cc1c8a4", + "rev": "f2bec38beca4aea9e481f2fd3ee319c519124649", "type": "github" }, "original": { @@ -338,11 +341,11 @@ "opam-repository": { "flake": false, "locked": { - "lastModified": 1695894792, - "narHash": "sha256-7Llico807vq14AkqAaDIWogC50xLxU38nuNEH06YNPE=", + "lastModified": 1732612513, + "narHash": "sha256-kju4NWEQo4xTxnKeBIsmqnyxIcCg6sNZYJ1FmG/gCDw=", "owner": "ocaml", "repo": "opam-repository", - "rev": "33fcf32f269ee5af70b31e27442397a0cdaf28b2", + "rev": "3d52b66b04788999a23f22f0d59c2dfc831c4f32", "type": "github" }, "original": { @@ -385,11 +388,11 @@ "treefmt-nix": [] }, "locked": { - "lastModified": 1703076010, - "narHash": "sha256-VaoDgib09zqtF0rREUvD2inmE9N4ECT1i02DVAhmOPk=", + "lastModified": 1731205797, + "narHash": "sha256-F7N1mxH1VrkVNHR3JGNMRvp9+98KYO4b832KS8Gl2xI=", "owner": "nix-community", "repo": "poetry2nix", - "rev": "b76e91da74ad7af0bc397561a59a19fcbc2ad488", + "rev": "f554d27c1544d9c56e5f1f8e2b8aff399803674e", "type": "github" }, "original": { @@ -399,50 +402,20 @@ } }, "pre-commit-hooks": { - "inputs": { - "flake-utils": [ - "ihaskell", - "hls", - "flake-utils" - ], - "nixpkgs": [ - "ihaskell", - "hls", - "nixpkgs" - ] - }, - "locked": { - "lastModified": 1624971177, - "narHash": "sha256-Amf/nBj1E77RmbSSmV+hg6YOpR+rddCbbVgo5C7BS0I=", - "owner": "cachix", - "repo": "pre-commit-hooks.nix", - "rev": "397f0713d007250a2c7a745e555fa16c5dc8cadb", - "type": "github" - }, - "original": { - "owner": "cachix", - "repo": "pre-commit-hooks.nix", - "type": "github" - } - }, - "pre-commit-hooks_2": { "inputs": { "flake-compat": [], - "flake-utils": [ - "flake-utils" - ], - "gitignore": "gitignore_2", + "gitignore": "gitignore", "nixpkgs": [ "nixpkgs" ], "nixpkgs-stable": "nixpkgs-stable_2" }, "locked": { - "lastModified": 1698227354, - "narHash": "sha256-Fi5H9jbaQLmLw9qBi/mkR33CoFjNbobo5xWdX4tKz1Q=", + "lastModified": 1732021966, + "narHash": "sha256-mnTbjpdqF0luOkou8ZFi2asa1N3AA2CchR/RqCNmsGE=", "owner": "cachix", "repo": "pre-commit-hooks.nix", - "rev": "bd38df3d508dfcdff52cd243d297f218ed2257bf", + "rev": "3308484d1a443fc5bc92012435d79e80458fe43c", "type": "github" }, "original": { @@ -474,29 +447,27 @@ "ihaskell": "ihaskell", "nix-dart": "nix-dart", "nixpkgs": "nixpkgs_2", + "nixpkgs-master": "nixpkgs-master", "nixpkgs-stable": "nixpkgs-stable", "npmlock2nix": "npmlock2nix", "opam-nix": "opam-nix", "poetry2nix": "poetry2nix", - "pre-commit-hooks": "pre-commit-hooks_2", + "pre-commit-hooks": "pre-commit-hooks", "rust-overlay": "rust-overlay" } }, "rust-overlay": { "inputs": { - "flake-utils": [ - "flake-utils" - ], "nixpkgs": [ "nixpkgs" ] }, "locked": { - "lastModified": 1696126582, - "narHash": "sha256-uo4cn/d2rHPy/fpKZKFBOaVO531zs/Doxz43imrpqZM=", + "lastModified": 1733106880, + "narHash": "sha256-aJmAIjZfWfPSWSExwrYBLRgXVvgF5LP1vaeUGOOIQ98=", "owner": "oxalica", "repo": "rust-overlay", - "rev": "fc6fe50d9a4540a1111731baaa00f207301fdeb7", + "rev": "e66c0d43abf5bdefb664c3583ca8994983c332ae", "type": "github" }, "original": { diff --git a/flake.nix b/flake.nix index 12714a03..2ed7b59f 100644 --- a/flake.nix +++ b/flake.nix @@ -9,25 +9,25 @@ ]; inputs.nixpkgs.url = "github:nixos/nixpkgs/nixpkgs-unstable"; - inputs.nixpkgs-stable.url = "github:nixos/nixpkgs/nixos-23.05"; + inputs.nixpkgs-stable.url = "github:nixos/nixpkgs/nixos-24.11"; + inputs.nixpkgs-master.url = "github:nixos/nixpkgs/master"; inputs.flake-compat.url = "github:edolstra/flake-compat"; inputs.flake-compat.flake = false; inputs.flake-utils.url = "github:numtide/flake-utils"; inputs.ihaskell.url = "github:ihaskell/ihaskell"; - inputs.ihaskell.inputs.nixpkgs.follows = "nixpkgs"; - inputs.ihaskell.inputs.flake-compat.follows = ""; inputs.ihaskell.inputs.flake-utils.follows = "flake-utils"; + inputs.ihaskell.inputs.nixpkgsMaster.follows = "nixpkgs-master"; + inputs.ihaskell.inputs.nixpkgs24_11.follows = "nixpkgs-stable"; inputs.nix-dart.url = "github:djacu/nix-dart"; inputs.nix-dart.inputs.nixpkgs.follows = "nixpkgs"; inputs.nix-dart.inputs.flake-utils.follows = "flake-utils"; - inputs.npmlock2nix.url = "github:nix-community/npmlock2nix/0ba0746d62974403daf717cded3f24c617622bc7"; + inputs.npmlock2nix.url = "github:nix-community/npmlock2nix"; inputs.npmlock2nix.flake = false; inputs.opam-nix.url = "github:tweag/opam-nix"; inputs.opam-nix.inputs.flake-compat.follows = ""; inputs.opam-nix.inputs.flake-utils.follows = "flake-utils"; inputs.opam-nix.inputs.nixpkgs.follows = "nixpkgs"; inputs.pre-commit-hooks.url = "github:cachix/pre-commit-hooks.nix"; - inputs.pre-commit-hooks.inputs.flake-utils.follows = "flake-utils"; inputs.pre-commit-hooks.inputs.nixpkgs.follows = "nixpkgs"; inputs.pre-commit-hooks.inputs.flake-compat.follows = ""; # https://github.com/nix-community/poetry2nix/pull/1329 @@ -36,7 +36,6 @@ inputs.poetry2nix.inputs.nixpkgs.follows = "nixpkgs"; inputs.poetry2nix.inputs.treefmt-nix.follows = ""; inputs.rust-overlay.url = "github:oxalica/rust-overlay"; - inputs.rust-overlay.inputs.flake-utils.follows = "flake-utils"; inputs.rust-overlay.inputs.nixpkgs.follows = "nixpkgs"; outputs = { @@ -93,14 +92,12 @@ alejandra.enable = true; typos = { enable = true; + settings.write = true; types = ["file"]; files = "\\.((txt)|(md)|(nix)|\\d)$"; }; }; excludes = ["^\\.jupyter/"]; # JUPYTERLAB_DIR - settings = { - typos.write = true; - }; }; update-poetry-lock = diff --git a/lib/jupyter.nix b/lib/jupyter.nix index fede7abc..ee476626 100644 --- a/lib/jupyter.nix +++ b/lib/jupyter.nix @@ -168,7 +168,7 @@ '' + (lib.strings.optionalString ( builtins.any - (kernel: kernel.kernelInstance.language == "julia") + (kernel: (kernel ? kernelInstance && kernel.kernelInstance.language == "julia")) kernelDerivations ) '' # add Julia for IJulia diff --git a/lib/overrides.nix b/lib/overrides.nix index 63f7d41a..0c945f63 100644 --- a/lib/overrides.nix +++ b/lib/overrides.nix @@ -1,18 +1,46 @@ pkgs: let - addNativeBuildInputs = prev: drvName: inputs: { - "${drvName}" = prev.${drvName}.overridePythonAttrs (old: { - nativeBuildInputs = (old.nativeBuildInputs or []) ++ inputs; - }); - }; - preOverlay = final: prev: { arrow = prev.arrow.override { preferWheel = true; }; + pyzmq = prev.pyzmq.overridePythonAttrs (old: { + nativeBuildInputs = + old.nativeBuildInputs + or [] + ++ [ + pkgs.which + ]; + patchPhase = '' + export PATH="$PATH:${pkgs.cmake}/bin" + ''; + }); + }; + pypkgs-build-requirements = { + pdm = ["pdm-backend"]; + webcolors = ["pdm-backend"]; + dep-logic = ["pdm-backend"]; + findpython = ["pdm-backend"]; + pbs-installer = ["pdm-backend"]; + unearth = ["pdm-backend"]; + hishel = ["hatch-fancy-pypi-readme"]; + jinja2 = ["flit-core"]; + pyzmq = ["scikit-build-core"]; + urllib3 = ["hatchling" "hatch-vcs"]; }; - postOverlay = final: prev: - {} + (builtins.mapAttrs ( + package: build-requirements: + (builtins.getAttr package prev).overridePythonAttrs (old: { + buildInputs = + (old.buildInputs or []) + ++ (builtins.map (pkg: + if builtins.isString pkg + then builtins.getAttr pkg prev + else pkg) + build-requirements); + }) + ) + pypkgs-build-requirements) // { testbook = prev.testbook.overridePythonAttrs (old: { postPatch = '' @@ -26,5 +54,26 @@ pkgs: let rm -rf tmp ''; }); + rpds-py = prev.rpds-py.overridePythonAttrs (old: { + cargoDeps = pkgs.rustPlatform.fetchCargoTarball { + inherit (old) src; + name = "${old.pname}-${old.version}"; + hash = "sha256-VOmMNEdKHrPKJzs+D735Y52y47MubPwLlfkvB7Glh14="; + }; + }); + rfc3986-validator = prev.rfc3986-validator.overridePythonAttrs (old: { + nativeBuildInputs = (old.buildInputs or []) ++ [prev.setuptools prev.wheel pkgs.patchutils]; + patchPhase = '' + # Patch setup.py to remove pytest-runner + substituteInPlace setup.py \ + --replace-fail "setup_requirements = ['pytest-runner', ]" "setup_requirements = []" \ + ''; + buildPhase = '' + python setup.py sdist bdist_wheel + ''; + }); + tinycss2 = prev.tinycss2.overridePythonAttrs (old: { + buildInputs = []; + }); }; in [preOverlay pkgs.poetry2nix.defaultPoetryOverrides postOverlay] diff --git a/modules/default.nix b/modules/default.nix index 23600f85..ec92a342 100644 --- a/modules/default.nix +++ b/modules/default.nix @@ -35,7 +35,7 @@ in { type = types.functionTo (types.listOf types.package); default = ps: []; example = ps: [ps.jupytext]; - description = lib.mdDoc "A list of packages for extending the jupyterlab environment"; + description = "A list of packages for extending the jupyterlab environment"; }; } // ( diff --git a/modules/kernel.nix b/modules/kernel.nix index 90364ba5..5093b8c1 100644 --- a/modules/kernel.nix +++ b/modules/kernel.nix @@ -14,7 +14,7 @@ in { type = types.bool; default = false; example = true; - description = lib.mdDoc '' + description = '' Enable ${kernelName} kernel. ''; }; @@ -23,7 +23,7 @@ in { type = types.str; default = "${kernelName}-${name}"; example = "${kernelName}-example"; - description = lib.mdDoc '' + description = '' Name of the ${kernelName} kernel. ''; }; @@ -32,7 +32,7 @@ in { type = types.str; default = "${config.name} kernel"; example = "${kernelName} example kernel"; - description = lib.mdDoc '' + description = '' Display name of the ${kernelName} kernel. ''; }; @@ -41,7 +41,7 @@ in { type = types.listOf types.package; default = requiredRuntimePackages; example = lib.literalExpression "[pkgs.example]"; - description = lib.mdDoc '' + description = '' A list of required runtime packages for this ${kernelName} kernel. ''; }; @@ -49,7 +49,7 @@ in { runtimePackages = lib.mkOption { type = types.listOf types.package; default = []; - description = lib.mdDoc '' + description = '' A list of user desired runtime packages for this ${kernelName} kernel. ''; }; @@ -72,7 +72,7 @@ in { }; }; type = types.attrs; - description = lib.mdDoc '' + description = '' Extra kernel spec attributes. ''; }; diff --git a/modules/kernels/bash/poetry.lock b/modules/kernels/bash/poetry.lock index 82ffb7b4..13e22b52 100644 --- a/modules/kernels/bash/poetry.lock +++ b/modules/kernels/bash/poetry.lock @@ -1,57 +1,43 @@ -# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. [[package]] name = "appnope" -version = "0.1.3" +version = "0.1.4" description = "Disable App Nap on macOS >= 10.9" -category = "main" optional = false -python-versions = "*" +python-versions = ">=3.6" files = [ - {file = "appnope-0.1.3-py2.py3-none-any.whl", hash = "sha256:265a455292d0bd8a72453494fa24df5a11eb18373a60c7c0430889f22548605e"}, - {file = "appnope-0.1.3.tar.gz", hash = "sha256:02bd91c4de869fbb1e1c50aafc4098827a7a54ab2f39d9dcba6c9547ed920e24"}, + {file = "appnope-0.1.4-py2.py3-none-any.whl", hash = "sha256:502575ee11cd7a28c0205f379b525beefebab9d161b7c964670864014ed7213c"}, + {file = "appnope-0.1.4.tar.gz", hash = "sha256:1de3860566df9caf38f01f86f65e0e13e379af54f9e4bee1e66b48f2efffd1ee"}, ] [[package]] name = "asttokens" -version = "2.4.0" +version = "2.4.1" description = "Annotate AST trees with source code positions" -category = "main" optional = false python-versions = "*" files = [ - {file = "asttokens-2.4.0-py2.py3-none-any.whl", hash = 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["astroid (>=1,<2)", "astroid (>=2,<4)"] +test = ["astroid (>=1,<2)", "astroid (>=2,<4)", "pytest"] [[package]] name = "bash-kernel" -version = "0.9.1" +version = "0.9.3" description = "A bash kernel for Jupyter" -category = "main" optional = false python-versions = "*" files = [ - {file = "bash_kernel-0.9.1-py2.py3-none-any.whl", hash = "sha256:eeadf594bd54005250dbbad23e38cca620efada8090e4375d31b9b2e056f2541"}, - {file = "bash_kernel-0.9.1.tar.gz", hash = "sha256:0183d53e360ff9b68471052a9a289a81621732516b034e278e9720b5d15a162b"}, + {file = "bash_kernel-0.9.3-py2.py3-none-any.whl", hash = "sha256:71297892a8c4edd4633aa42d4bccf662f147438e375b4093b6a3261321715099"}, + {file = "bash_kernel-0.9.3.tar.gz", hash = "sha256:9f7a03811ca7d9cb1fbff8082237cf0450b97182252fd0b80587a16b65e66d58"}, ] [package.dependencies] @@ -60,64 +46,78 @@ pexpect = ">=4.0" [[package]] name = "cffi" -version = "1.16.0" +version = "1.17.1" description = "Foreign Function Interface for Python calling C code." 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b/modules/kernels/c/pyproject.toml @@ -5,11 +5,11 @@ description = "" authors = [] [tool.poetry.dependencies] -python = "^3.10" -ipykernel = "*" -jupyter_c_kernel = "*" +python = "^3.11" [tool.poetry.dev-dependencies] +ipykernel = "*" +jupyter_c_kernel = "*" [build-system] requires = ["poetry-core>=1.0.0"] diff --git a/modules/kernels/dotnet/default.nix b/modules/kernels/dotnet/default.nix index 5c1005a2..8f4f23af 100644 --- a/modules/kernels/dotnet/default.nix +++ b/modules/kernels/dotnet/default.nix @@ -55,7 +55,7 @@ language = lib.mkOption { type = lib.types.enum ["csharp" "fsharp"]; default = "csharp"; - description = lib.mdDoc '' + description = '' Language flavour of dotnet-interactive kernel ''; }; @@ -80,7 +80,7 @@ in { kernel.${kernelName}."example".enable = true; } ''; - description = lib.mdDoc '' + description = '' A ${kernelName} kernel for IPython. ''; }; diff --git a/modules/kernels/elm/overrides.nix b/modules/kernels/elm/overrides.nix index beb51e76..8faf9899 100644 --- a/modules/kernels/elm/overrides.nix +++ b/modules/kernels/elm/overrides.nix @@ -1,15 +1,34 @@ pkgs: let - addNativeBuildInputs = prev: drvName: inputs: { - "${drvName}" = prev.${drvName}.overridePythonAttrs (old: { - nativeBuildInputs = (old.nativeBuildInputs or []) ++ inputs; - }); - }; - - preOverlay = final: prev: { - arrow = prev.arrow.override { - preferWheel = true; - }; + pypkgs-build-requirements = { + pdm = ["pdm-backend"]; + webcolors = ["pdm-backend"]; + dep-logic = ["pdm-backend"]; + findpython = ["pdm-backend"]; + pbs-installer = ["pdm-backend"]; + unearth = ["pdm-backend"]; + hishel = ["hatch-fancy-pypi-readme"]; }; - - postOverlay = final: prev: {}; -in [preOverlay pkgs.poetry2nix.defaultPoetryOverrides postOverlay] + overlay = pkgs.poetry2nix.defaultPoetryOverrides.extend (final: prev: + (builtins.mapAttrs ( + package: build-requirements: + (builtins.getAttr package prev).overridePythonAttrs (old: { + buildInputs = + (old.buildInputs or []) + ++ (builtins.map (pkg: + if builtins.isString pkg + then builtins.getAttr pkg prev + else pkg) + build-requirements); + }) + ) + pypkgs-build-requirements) + // { + rpds-py = prev.rpds-py.overridePythonAttrs (old: { + cargoDeps = pkgs.rustPlatform.fetchCargoTarball { + inherit (old) src; + name = "${old.pname}-${old.version}"; + hash = "sha256-VOmMNEdKHrPKJzs+D735Y52y47MubPwLlfkvB7Glh14="; + }; + }); + }); +in [overlay] diff --git a/modules/kernels/elm/poetry.lock b/modules/kernels/elm/poetry.lock index 7ae42656..72f90c64 100644 --- a/modules/kernels/elm/poetry.lock +++ b/modules/kernels/elm/poetry.lock @@ -1,35 +1,34 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. 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["Sphinx (>=6.0)", "myst-parser (>=2.0.0)", "sphinx-rtd-theme (>=1.1.0)"] optional = ["python-socks", "wsaccel"] test = ["websockets"] [[package]] name = "widgetsnbextension" -version = "4.0.9" +version = "4.0.13" description = "Jupyter interactive widgets for Jupyter Notebook" optional = false python-versions = ">=3.7" files = [ - {file = "widgetsnbextension-4.0.9-py3-none-any.whl", hash = "sha256:91452ca8445beb805792f206e560c1769284267a30ceb1cec9f5bcc887d15175"}, - {file = "widgetsnbextension-4.0.9.tar.gz", hash = "sha256:3c1f5e46dc1166dfd40a42d685e6a51396fd34ff878742a3e47c6f0cc4a2a385"}, + {file = "widgetsnbextension-4.0.13-py3-none-any.whl", hash = "sha256:74b2692e8500525cc38c2b877236ba51d34541e6385eeed5aec15a70f88a6c71"}, + {file = "widgetsnbextension-4.0.13.tar.gz", hash = "sha256:ffcb67bc9febd10234a362795f643927f4e0c05d9342c727b65d2384f8feacb6"}, ] [metadata] lock-version = "2.0" -python-versions = "^3.10" -content-hash = "8c8cf3ae7839ad2cc8a7e8acbffc5e9027effa1595c0771d9c9800c4fcd285d7" +python-versions = "^3.11" +content-hash = "c1119d252a5f3a9b2f5b436213c5a0148202ae2681f9d8442451614447c3c352" diff --git a/modules/kernels/elm/pyproject.toml b/modules/kernels/elm/pyproject.toml index 1ffbe0cb..c16b231d 100644 --- a/modules/kernels/elm/pyproject.toml +++ b/modules/kernels/elm/pyproject.toml @@ -5,10 +5,11 @@ description = "" authors = [] [tool.poetry.dependencies] -python = "^3.10" -elm_kernel = "*" +python = "^3.11" [tool.poetry.dev-dependencies] +elm_kernel = "*" + [build-system] requires = ["poetry-core>=1.0.0"] diff --git a/modules/kernels/go/default.nix b/modules/kernels/go/default.nix index 1eb29880..eb77ae39 100644 --- a/modules/kernels/go/default.nix +++ b/modules/kernels/go/default.nix @@ -86,7 +86,7 @@ in { kernel.${kernelName}."example".enable = true; } ''; - description = lib.mdDoc '' + description = '' A ${kernelName} kernel for IPython. ''; }; diff --git a/modules/kernels/haskell/default.nix b/modules/kernels/haskell/default.nix index 9b76b8cb..6d2dfd5e 100644 --- a/modules/kernels/haskell/default.nix +++ b/modules/kernels/haskell/default.nix @@ -1,9 +1,7 @@ { self, system, - config, lib, - mkKernel, ... }: let inherit (lib) types; @@ -15,7 +13,10 @@ ... }: let requiredRuntimePackages = [ - config.nixpkgs.haskell.compiler.${config.haskellCompiler} + # https://github.com/IHaskell/IHaskell/issues/1434#issuecomment-2500706338 + # requiredRuntimePackages can't be empty + config.nixpkgs.hello + # config.nixpkgs.haskell.compiler.${config.haskellCompiler} ]; args = {inherit self system lib config name kernelName requiredRuntimePackages;}; kernelModule = import ./../../kernel.nix args; @@ -27,7 +28,7 @@ displayName, requiredRuntimePackages, runtimePackages ? [], - haskellKernelPkg ? import "${self.inputs.ihaskell}/release.nix", + haskellKernelPkg, haskellCompiler, extraHaskellFlags ? "-M3g -N2", extraHaskellPackages ? (_: []), @@ -36,35 +37,22 @@ allRuntimePackages = requiredRuntimePackages ++ runtimePackages; env = haskellKernelPkg { - compiler = haskellCompiler; - nixpkgs = pkgs; + inherit name; packages = extraHaskellPackages; + rtsopts = extraHaskellFlags; + extraEnvironmentBinaries = allRuntimePackages; }; - - kernelspec = let - ihaskellGhcLib = env.ihaskellGhcLibFunc env.ihaskellExe env.ihaskellEnv; - wrappedEnv = - pkgs.runCommand "wrapper-${ihaskellGhcLib.name}" - {nativeBuildInputs = [pkgs.makeWrapper];} - '' - mkdir -p $out/bin - for i in ${ihaskellGhcLib}/bin/*; do - filename=$(basename $i) - ln -s ${ihaskellGhcLib}/bin/$filename $out/bin/$filename - wrapProgram $out/bin/$filename \ - --set PATH "${pkgs.lib.makeSearchPath "bin" allRuntimePackages}" - done - ''; - in - env.ihaskellKernelFileFunc - wrappedEnv - extraHaskellFlags; in { inherit name displayName; language = "haskell"; - # See https://github.com/IHaskell/IHaskell/pull/1191 - argv = kernelspec.argv ++ ["--codemirror" "Haskell"]; + env = pkgs.symlinkJoin { + inherit name; + paths = [ + env + env.ihaskellDataDir + ]; + }; codemirrorMode = "Haskell"; logo64 = ./logo-64x64.png; } @@ -77,16 +65,16 @@ default = self.inputs.ihaskell; defaultText = lib.literalExpression "self.inputs.ihaskell"; example = lib.literalExpression "self.inputs.ihaskell"; - description = lib.mdDoc '' + description = '' ihaskell flake input to be used for this ${kernelName} kernel. ''; }; haskellCompiler = lib.mkOption { type = types.str; - default = "ghc943"; - example = "ghc943"; - description = lib.mdDoc '' + default = "ghc910"; + example = "ghc910"; + description = '' haskell compiler ''; }; @@ -95,7 +83,7 @@ type = types.str; default = "-M3g -N2"; example = "-M3g -N2"; - description = lib.mdDoc '' + description = '' haskell compiler flags ''; }; @@ -105,7 +93,7 @@ default = _: []; defaultText = lib.literalExpression "ps: []"; example = lib.literalExpression "ps: [ps.lens ps.vector]"; - description = lib.mdDoc '' + description = '' extra haskell packages ''; }; @@ -113,11 +101,54 @@ // kernelModule.options; config = lib.mkIf config.enable { - build = mkKernel (kernelFunc config.kernelArgs); + build = (kernelFunc config.kernelArgs).env; kernelArgs = { inherit (config) extraHaskellFlags extraHaskellPackages haskellCompiler; - haskellKernelPkg = import "${config.ihaskell}/release.nix"; + haskellKernelPkg = + ((config.nixpkgs).appendOverlays [ + (_: _: {nix-filter = self.inputs.ihaskell.inputs.nix-filter;}) + (import (config.ihaskell + "/nix/overlay-9.8.nix")) + (import (config.ihaskell + "/nix/overlay-9.6.nix")) + (import (config.ihaskell + "/nix/overlay-9.10.nix")) + (sel: sup: { + haskell = + sup.haskell + // { + packages = + sup.haskell.packages + // { + ghc910 = sup.haskell.packages.ghc910.override { + overrides = self: super: { + # ghc-syntax-highlighter = self.ghc-syntax-highlighter; + # ghc-lib-parser = self.ghc-lib-parser_9_8_3_20241022; + # ghc-lib-parser-ex = self.ghc-lib-parser-ex_9_8_0_2; + ghc-syntax-highlighter = self.ghc-syntax-highlighter_0_0_12_0; + uuid-types = self.uuid-types_1_0_6; + uuid = self.uuid_1_3_16; + # https://github.com/ndmitchell/hlint/issues/1593 + hlint = + self + .hlint_3_8 + .overrideAttrs (old: { + src = sel.fetchFromGitHub { + owner = "ndmitchell"; + repo = "hlint"; + rev = "7aafde56f6bc526aedb95fb282d8fd2b4ea290cc"; + sha256 = "sha256-B5aO6pec+Cpxelv7+Mlt1FWjLGwsQCXI0thjCMpXqeE="; + }; + }); + }; + }; + }; + }; + }) + ]) + .callPackage + ./release.nix { + compiler = config.haskellCompiler; + ihaskell = config.ihaskell; + }; } // kernelModule.kernelArgs; }; @@ -131,7 +162,7 @@ in { kernel.${kernelName}."example".enable = true; } ''; - description = lib.mdDoc '' + description = '' A ${kernelName} kernel for IPython. ''; }; diff --git a/modules/kernels/haskell/release.nix b/modules/kernels/haskell/release.nix new file mode 100644 index 00000000..d57072da --- /dev/null +++ b/modules/kernels/haskell/release.nix @@ -0,0 +1,116 @@ +# fork of https://github.com/IHaskell/IHaskell/blob/575059d33789d400b9677070cdb05a65553379b7/nix/release.nix +{ + ihaskell, + lib, + buildEnv, + callPackage, + haskell, + makeWrapper, + pkgs, + runCommand, + writeShellScriptBin, + # Compiler name as a string, like "ghc92". + # Must be a kernel found within pkgs.haskell.packages.*. + compiler, + # Whether to enable hlint. + enableHlint ? true, +}: { + # Extra binaries to include in the final environment, like jupyter-lab or jupyter-console. + # Will have their JUPYTER_PATH and PATH environment variables prefixed to tell them about the kernel. + extraEnvironmentBinaries ? [], + # Haskell packages to include. First argument is an attrset of available packages. + packages ? (_: []), + # RTS options passed when invoking IHaskell in the kernelspec. + rtsopts ? "-M3g -N2", + staticExecutable ? false, + systemPackages ? (_: []), + name, +}: let + ihaskellOverlay = callPackage "${ihaskell}/nix/ihaskell-overlay.nix" {inherit enableHlint;}; + + # Haskell packages set with IHaskell packages added + haskellPackages = haskell.packages."${compiler}".override (old: { + overrides = + lib.composeExtensions + (old.overrides or (_: _: {})) + ihaskellOverlay; + }); + + # GHC with desired packages. This includes user-configured packages plus IHaskell itself, so + # you can import things like IHaskell.Display + ihaskellEnv = haskellPackages.ghcWithPackages (ps: (packages ps) ++ [ps.ihaskell]); + + # ihaskell binary wrapper which adds the "-l" argument + ihaskellGhcLib = writeShellScriptBin "ihaskell" '' + ${ihaskellEnv}/bin/ihaskell -l $(${ihaskellEnv}/bin/ghc --print-libdir) "$@" + ''; + + # Jupyter directory with kernels/haskell/kernel.json, plus logo and kernel.js + jupyterDirKernel = let + kernelFile = { + display_name = name; + argv = + [ + "${ihaskellGhcLib}/bin/ihaskell" + "kernel" + "{connection_file}" + "+RTS" + ] + ++ (lib.splitString " " rtsopts) + ++ [ + "-RTS" + ]; + language = "haskell"; + }; + in + runCommand "ihaskell-kernel" {} '' + export kerneldir=$out/kernels/${name} + mkdir -p $kerneldir + cp ${ihaskell + /html}/* $kerneldir + echo '${builtins.toJSON kernelFile}' > $kerneldir/kernel.json + ''; + + # Separate Jupyter directory with the "labextensions" dir. + # TODO: just copy this alongside the HTML in jupyterDir? + jupyterDirLabExtensions = runCommand "ihaskell-labextension" {} '' + mkdir -p $out/labextensions/ + ln -s ${ihaskell + /jupyterlab-ihaskell/labextension} $out/labextensions/jupyterlab-ihaskell + ''; + + # Combine the paths in jupyterDirKernel and jupyterDirLabExtensions + ihaskellDataDir = buildEnv { + name = "ihaskell-data-dir-" + compiler; + paths = [jupyterDirKernel jupyterDirLabExtensions]; + }; +in + # Final IHaskell environment: + buildEnv { + name = "ihaskell-with-packages-" + compiler; + nativeBuildInputs = [makeWrapper]; + paths = [ihaskellEnv] ++ extraEnvironmentBinaries; + postBuild = '' + for prg in $out/bin"/"*;do + if [[ -f $prg && -x $prg ]]; then + wrapProgram $prg \ + --prefix PATH : "${lib.makeBinPath ([ihaskellEnv] ++ (systemPackages pkgs))}" \ + --prefix JUPYTER_PATH : "${ihaskellDataDir}" + fi + done + ''; + + passthru = { + inherit haskellPackages; + inherit ihaskellOverlay; + inherit ihaskellDataDir; + # statically linking against haskell libs reduces closure size at the expense + # of startup/reload time, so we make it configurable + ihaskellExe = + if staticExecutable + then haskell.lib.justStaticExecutables haskellPackages.ihaskell + else haskell.lib.enableSharedExecutables haskellPackages.ihaskell; + }; + + meta = { + mainProgram = "jupyter-lab"; + }; + } diff --git a/modules/kernels/javascript/default.nix b/modules/kernels/javascript/default.nix index 8e373c4b..f0b2ebb0 100644 --- a/modules/kernels/javascript/default.nix +++ b/modules/kernels/javascript/default.nix @@ -92,7 +92,7 @@ in { kernel.${kernelName}."example".enable = true; } ''; - description = lib.mdDoc '' + description = '' A ${kernelName} kernel for IPython. ''; }; diff --git a/modules/kernels/julia/default.nix b/modules/kernels/julia/default.nix index 590a4d07..8e1b16fc 100644 --- a/modules/kernels/julia/default.nix +++ b/modules/kernels/julia/default.nix @@ -26,7 +26,7 @@ requiredRuntimePackages ? [], runtimePackages ? [], julia, - ijuliaRev ? "Vo51o", + ijuliaRev ? "bHdNn", extraJuliaPackages ? [], override ? {}, extraKernelSpc, @@ -74,29 +74,29 @@ { ijuliaRev = lib.mkOption { type = types.str; - default = "Vo51o"; - description = lib.mdDoc '' + default = "bHdNn"; + description = '' IJulia revision ''; }; julia = lib.mkOption { type = types.package; - default = config.nixpkgs.julia_19; - description = lib.mdDoc '' + default = config.nixpkgs.julia; + description = '' Julia Version ''; }; extraJuliaPackages = lib.mkOption { type = types.listOf types.str; default = []; - description = lib.mdDoc '' + description = '' Extra Julia packages to install ''; }; override = lib.mkOption { type = types.attrs; default = {}; - description = lib.mdDoc '' + description = '' Override JuliaWithPackages ''; }; @@ -121,7 +121,7 @@ in { kernel.${kernelName}."example".enable = true; } ''; - description = lib.mdDoc '' + description = '' A ${kernelName} kernel for IPython. ''; }; diff --git a/modules/kernels/julia/logo-LICENSE.md b/modules/kernels/julia/logo-LICENSE.md index 1cd5b415..2fb19800 100644 --- a/modules/kernels/julia/logo-LICENSE.md +++ b/modules/kernels/julia/logo-LICENSE.md @@ -21,7 +21,7 @@ The licensor cannot revoke these freedoms as long as you follow the license term measures that legally restrict others from doing anything the license permits. If you wish to use the Julia logo as is or derive another logo from it for commercial -purposes, you must conact the licensor, [Stefan Karpinski](stefan@karpinski.org), for +purposes, you must contact the licensor, [Stefan Karpinski](stefan@karpinski.org), for permission to do so as such usage is not covered under this license. ______________________________________________________________________ diff --git a/modules/kernels/nix/default.nix b/modules/kernels/nix/default.nix index dd906dec..30f6cff7 100644 --- a/modules/kernels/nix/default.nix +++ b/modules/kernels/nix/default.nix @@ -71,7 +71,7 @@ nix = lib.mkOption { type = types.package; default = config.nixpkgs.nix; - description = lib.mdDoc '' + description = '' Nix Version ''; }; @@ -96,7 +96,7 @@ in { kernel.${kernelName}."example".enable = true; } ''; - description = lib.mdDoc '' + description = '' A ${kernelName} kernel for IPython. ''; }; diff --git a/modules/kernels/ocaml/default.nix b/modules/kernels/ocaml/default.nix index 780386dc..4c6c57ec 100644 --- a/modules/kernels/ocaml/default.nix +++ b/modules/kernels/ocaml/default.nix @@ -125,7 +125,7 @@ default = self.inputs.opam-nix; defaultText = lib.literalExpression "self.inputs.opam-nix"; example = lib.literalExpression ''builtins.getFlake "github:tweag/opam-nix"''; - description = lib.mdDoc '' + description = '' opam-nix flake input to be used for this ${kernelName} kernel. ''; }; @@ -134,7 +134,7 @@ type = types.attrs; default = {merlin = "*";}; example = {merlin = "4.7.1-500";}; - description = lib.mdDoc '' + description = '' Attribute set of required OCaml packages. ''; }; @@ -148,7 +148,7 @@ my-custom-package = "dev"; }; - description = lib.mdDoc '' + description = '' Attribute set of user desired OCaml packages. If you wish to add custom packages (not from opam-repository), see also the `opamProjects` option. @@ -205,7 +205,7 @@ in { kernel.${kernelName}."example".enable = true; } ''; - description = lib.mdDoc '' + description = '' A ${kernelName} kernel for IPython. ''; }; diff --git a/modules/kernels/postgres/pyproject.toml b/modules/kernels/postgres/pyproject.toml index 77ed91d5..a51356c9 100644 --- a/modules/kernels/postgres/pyproject.toml +++ b/modules/kernels/postgres/pyproject.toml @@ -5,11 +5,10 @@ description = "" authors = [] [tool.poetry.dependencies] -python = "^3.10" -postgres_kernel = "^0.2.2" +python = "^3.11" [tool.poetry.dev-dependencies] -# build systems for dependencies +postgres_kernel = "*" [build-system] requires = ["poetry-core>=1.0.0"] diff --git a/modules/kernels/python/overrides.nix b/modules/kernels/python/overrides.nix index 0e2fe68a..0adef0e4 100644 --- a/modules/kernels/python/overrides.nix +++ b/modules/kernels/python/overrides.nix @@ -1 +1,73 @@ -final: prev: {} +pkgs: let + pypkgs-build-requirements = { + # pdm = ["pdm-backend"]; + }; + overlay = pkgs.poetry2nix.defaultPoetryOverrides.extend (final: prev: + (builtins.mapAttrs ( + package: build-requirements: + (builtins.getAttr package prev).overridePythonAttrs (old: { + buildInputs = + (old.buildInputs or []) + ++ (builtins.map (pkg: + if builtins.isString pkg + then builtins.getAttr pkg prev + else pkg) + build-requirements); + }) + ) + pypkgs-build-requirements) + // { + scikit-build-core = prev.scikit-build-core.overridePythonAttrs (old: rec { + version = "0.10.7"; + src = prev.pkgs.fetchFromGitHub { + owner = "scikit-build"; + repo = "scikit-build-core"; + rev = "refs/tags/v${version}"; + sha256 = "sha256-R6/Y9brIYBA1P3YeG8zGaoPcxWFUDqZlqbZpWu3MIIw="; + }; + }); + cython = prev.cython.overridePythonAttrs (old: rec { + version = "3.0.11-1"; + src = prev.pkgs.fetchFromGitHub { + owner = "cython"; + repo = "cython"; + rev = "refs/tags/${version}"; + sha256 = "sha256-P2k21uNC6X+R6a1dWAIspGnUc6JwAzRXUleVfZG+vqY="; + }; + patches = []; + }); + pyzmq = prev.pyzmq.overridePythonAttrs (old: { + buildInputs = + (old.buildInputs or []) + ++ [ + final.scikit-build-core + final.pyproject-metadata + final.pathspec + ]; + nativeBuildInputs = + old.nativeBuildInputs + or [] + ++ [ + pkgs.which + ]; + + patchPhase = '' + export PATH="$PATH:${pkgs.cmake}/bin" + ''; + }); + + setuptools = + if prev.setuptools.version == "75.1.1" + then + prev.setuptools.overridePythonAttrs (old: rec { + version = "75.6.0"; + src = pkgs.fetchFromGitHub { + owner = "pypa"; + repo = "setuptools"; + rev = "refs/tags/v${version}"; + hash = "sha256-5sXgaSKED9OleB903DdEH1X53weW+Bd39P5Bm5OTRzg="; + }; + }) + else prev.setuptools; + }); +in [overlay] diff --git a/modules/kernels/python/poetry.lock b/modules/kernels/python/poetry.lock index 3dc91b05..6cb4a72f 100644 --- a/modules/kernels/python/poetry.lock +++ b/modules/kernels/python/poetry.lock @@ -1,103 +1,105 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. 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= "6e41b0ae6288b3c74d61a74bcbba7a6e64e9fc4e9f926ac9f20944af271fc022" +python-versions = "^3.11" +content-hash = "7f0e044d2dac0d43f4c59350bebc03f55489543bfb2d434d98e62298cd2768ee" diff --git a/modules/kernels/python/pyproject.toml b/modules/kernels/python/pyproject.toml index 165fe8f2..2d416c87 100644 --- a/modules/kernels/python/pyproject.toml +++ b/modules/kernels/python/pyproject.toml @@ -5,10 +5,10 @@ description = "" authors = [] [tool.poetry.dependencies] -python = "^3.9" -ipykernel = "*" +python = "^3.11" [tool.poetry.dev-dependencies] +ipykernel = "*" [build-system] requires = ["poetry-core>=1.0.0"] diff --git a/modules/kernels/r/default.nix b/modules/kernels/r/default.nix index 8e3a7899..1764fe18 100644 --- a/modules/kernels/r/default.nix +++ b/modules/kernels/r/default.nix @@ -71,7 +71,7 @@ type = types.package; default = config.nixpkgs.rWrapper; defaultText = lib.literalExpression "pkgs.rWrapper"; - description = lib.mdDoc '' + description = '' R version from nixpkgs. ''; }; @@ -80,7 +80,7 @@ type = types.attrs; default = config.nixpkgs.rPackages; defaultText = lib.literalExpression "pkgs.rPackages"; - description = lib.mdDoc '' + description = '' A set of R packages. ''; }; @@ -90,7 +90,7 @@ default = _: []; defaultText = lib.literalExpression "_: []"; example = lib.literalExpression "ps: [ps.foreign ps.ggplot2]"; - description = lib.mdDoc '' + description = '' Extra R packages. ''; }; @@ -115,7 +115,7 @@ in { kernel.${kernelName}."example".enable = true; } ''; - description = lib.mdDoc '' + description = '' A ${kernelName} kernel for IPython. ''; }; diff --git a/modules/kernels/rust/default.nix b/modules/kernels/rust/default.nix index 82f601bb..5e046d65 100644 --- a/modules/kernels/rust/default.nix +++ b/modules/kernels/rust/default.nix @@ -81,7 +81,7 @@ type = types.package; default = config.nixpkgs.evcxr; example = lib.literalExpression "pkgs.evcxr"; - description = lib.mdDoc '' + description = '' An evaluation context for Rust. ''; }; @@ -91,7 +91,7 @@ default = self.inputs.rust-overlay; defaultText = lib.literalExpression "self.inputs.rust-overlay"; example = lib.literalExpression "self.inputs.rust-overlay"; - description = lib.mdDoc '' + description = '' An overlay for binary distributed rust toolchains. Adds `rust-bin` to nixpkgs which is needed for the Rust kernel. ''; }; @@ -119,7 +119,7 @@ in { kernel.${kernelName}."example".enable = true; } ''; - description = lib.mdDoc '' + description = '' A ${kernelName} kernel for IPython. ''; }; diff --git a/modules/kernels/scala/default.nix b/modules/kernels/scala/default.nix index b6a78e71..27662ba6 100644 --- a/modules/kernels/scala/default.nix +++ b/modules/kernels/scala/default.nix @@ -26,7 +26,7 @@ requiredRuntimePackages ? [], runtimePackages ? [], extraKernelSpc, - scala ? pkgs.scala, + scala ? pkgs.scala_2_12, coursier ? pkgs.coursier, jdk ? pkgs.jdk, jre ? pkgs.jre, @@ -37,7 +37,7 @@ almondSh = let baseName = "almond"; - version = "0.14.0-RC7"; + version = "0.14.0-RC8"; scalaVersion = scala.version; deps = stdenv.mkDerivation { name = "${baseName}-deps-${version}"; @@ -51,7 +51,7 @@ outputHashMode = "recursive"; outputHashAlgo = "sha256"; - outputHash = "sha256-LJ9eWV3FRhNl8pZvMQgwD43uMmeQoIi9v9d4SOzYcmg="; + outputHash = "sha256-fJ+CaFA5uUkoBPFddxAWJGHdIduHc9ao1kBRcvnSstY="; }; in stdenv.mkDerivation { @@ -114,9 +114,9 @@ { scala = lib.mkOption { type = types.package; - default = config.nixpkgs.scala; + default = config.nixpkgs.scala_2_12; example = lib.literalExpression "pkgs.scala"; - description = lib.mdDoc '' + description = '' Scala package to use with almond. ''; }; @@ -125,7 +125,7 @@ type = types.package; default = config.nixpkgs.coursier; example = lib.literalExpression "pkgs.coursier"; - description = lib.mdDoc '' + description = '' Coursier package to use with almond. ''; }; @@ -134,7 +134,7 @@ type = types.package; default = config.nixpkgs.jdk; example = lib.literalExpression "pkgs.jdk"; - description = lib.mdDoc '' + description = '' JDK package to use with almond. ''; }; @@ -143,7 +143,7 @@ type = types.package; default = config.nixpkgs.jre; example = lib.literalExpression "pkgs.jre"; - description = lib.mdDoc '' + description = '' JRE package to use with almond. ''; }; @@ -167,7 +167,7 @@ in { kernel.${kernelName}."example".enable = true; } ''; - description = lib.mdDoc '' + description = '' A ${kernelName} kernel for IPython. ''; }; diff --git a/modules/kernels/typescript/default.nix b/modules/kernels/typescript/default.nix index 70698186..71772e31 100644 --- a/modules/kernels/typescript/default.nix +++ b/modules/kernels/typescript/default.nix @@ -33,21 +33,23 @@ pkgs' = import self.inputs.nixpkgs-stable.outPath { inherit system; - config.permittedInsecurePackages = [ - "nodejs-14.21.3" - "openssl-1.1.1w" + + overlays = [ + # https://github.com/nix-community/npmlock2nix/issues/194 + (final: prev: {nodejs-16_x = prev.nodePackages.nodejs;}) ]; }; _npmlock2nix = pkgs'.callPackage npmlock2nix {}; - version = "1.0.15"; + version = "1.0.21"; tslabSrc = fetchTarball { url = "https://github.com/yunabe/tslab/archive/v${version}.tar.gz"; - sha256 = "1q2wsdcgha6qivs238pysgmiabjhyflpd1bqbx0cgisgiz2nq3vs"; + sha256 = "sha256:17krhjn7sl23333bddbjqrwjbx49c6s6ykdhfj8vg8g3jdc5i4n9"; }; - tslab = _npmlock2nix.build { + tslab = _npmlock2nix.v2.build { + nodejs = pkgs'.nodejs; src = tslabSrc; node_modules_attrs.packageLockJson = ./package-lock.json; buildInputs = [pkgs.makeWrapper]; @@ -138,7 +140,7 @@ default = self.inputs.npmlock2nix; defaultText = lib.literalExpression "self.inputs.npmlock2nix"; example = lib.literalExpression "self.inputs.npmlock2nix"; - description = lib.mdDoc '' + description = '' npmlock2nix flake input to be used to build this ${kernelName} kernel. 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terminal" optional = false python-versions = "*" files = [ - {file = "wcwidth-0.2.8-py2.py3-none-any.whl", hash = "sha256:77f719e01648ed600dfa5402c347481c0992263b81a027344f3e1ba25493a704"}, - {file = "wcwidth-0.2.8.tar.gz", hash = "sha256:8705c569999ffbb4f6a87c6d1b80f324bd6db952f5eb0b95bc07517f4c1813d4"}, + {file = "wcwidth-0.2.13-py2.py3-none-any.whl", hash = "sha256:3da69048e4540d84af32131829ff948f1e022c1c6bdb8d6102117aac784f6859"}, + {file = "wcwidth-0.2.13.tar.gz", hash = "sha256:72ea0c06399eb286d978fdedb6923a9eb47e1c486ce63e9b4e64fc18303972b5"}, ] [[package]] @@ -750,5 +770,5 @@ pexpect = "*" [metadata] lock-version = "2.0" -python-versions = "^3.10" -content-hash = "b4ca12d6d84e7b6c9f775175499a7ac715a489d6a772f19936be4f2bd6991af8" +python-versions = "^3.11" +content-hash = "6e51a05d8f7a55fc9c874ee017fa1d7789fcb1102e0d4338f5842b7938b10fbc" diff --git a/modules/kernels/zsh/pyproject.toml b/modules/kernels/zsh/pyproject.toml index db13e796..0239a056 100644 --- a/modules/kernels/zsh/pyproject.toml +++ b/modules/kernels/zsh/pyproject.toml @@ -5,11 +5,11 @@ description = "" authors = [] [tool.poetry.dependencies] -python = "^3.10" +python = "^3.11" +[tool.poetry.dev-dependencies] zsh-jupyter-kernel = "*" ipykernel = "*" -[tool.poetry.dev-dependencies] [build-system] requires = ["poetry-core>=1.0.0"] diff --git a/modules/poetry.nix b/modules/poetry.nix index 63d893e1..f7ccfb81 100644 --- a/modules/poetry.nix +++ b/modules/poetry.nix @@ -96,7 +96,7 @@ in { kernel.${kernelName}."example".enable = true; } ''; - description = lib.mdDoc '' + description = '' A ${kernelName} kernel for IPython. ''; }; diff --git a/modules/types/nixpkgs.nix b/modules/types/nixpkgs.nix index c17bc4f7..81e93fae 100644 --- a/modules/types/nixpkgs.nix +++ b/modules/types/nixpkgs.nix @@ -23,7 +23,7 @@ in else applyOverlays self.inputs.nixpkgs; defaultText = lib.literalExpression "self.inputs.nixpkgs"; example = lib.literalExpression "self.inputs.nixpkgs"; - description = lib.mdDoc '' + description = '' nixpkgs flake input to be used for jupyenv ''; apply = x: nixpkgsArg x; diff --git a/modules/types/poetry.nix b/modules/types/poetry.nix index 69052913..25d56d70 100644 --- a/modules/types/poetry.nix +++ b/modules/types/poetry.nix @@ -41,7 +41,7 @@ in { default = self + "/modules/kernels/${kernelName}"; defaultText = lib.literalExpression "self + \"/modules/kernels/${kernelName}\""; example = lib.literalExpression "self + \"/kernels/${kernelName}\""; - description = lib.mdDoc '' + description = '' Path to the root of the poetry project that provides this ${kernelName} kernel. ''; @@ -53,7 +53,7 @@ in { default = self + "/modules/kernels/${kernelName}"; defaultText = lib.literalExpression "self + \"/modules/kernels/${kernelName}\""; example = lib.literalExpression "self + \"/kernels/${kernelName}\""; - description = lib.mdDoc '' + description = '' Path to the root of the kernel module ''; }; @@ -109,7 +109,7 @@ in { type = types.package; default = config.nixpkgs.python3; example = "python310"; - description = lib.mdDoc '' + description = '' Name of the python interpreter (from nixpkgs) to be used for this ${kernelName} kernel. ''; @@ -144,7 +144,7 @@ in { type = types.bool; default = false; example = lib.literalExpression "true"; - description = lib.mdDoc '' + description = '' Use wheels rather than sdist as much as possible. ''; }; @@ -154,7 +154,7 @@ in { default = ["dev"]; defaultText = lib.literalExpression "[\"dev\"]"; example = lib.literalExpression ''["dev" "doc"]''; - description = lib.mdDoc '' + description = '' Which Poetry 1.2.0+ dependency groups to install for this ${kernelName} kernel. ''; @@ -165,7 +165,7 @@ in { default = self.inputs.poetry2nix; defaultText = lib.literalExpression "self.inputs.poetry2nix"; example = lib.literalExpression "self.inputs.poetry2nix"; - description = lib.mdDoc '' + description = '' poetry2nix flake input to be used for this ${kernelName} kernel. ''; }; @@ -174,7 +174,7 @@ in { type = types.bool; default = false; example = lib.literalExpression "true"; - description = lib.mdDoc '' + description = '' Ignore file collisions inside the environment. ''; }; @@ -196,7 +196,7 @@ in { ; overrides = - if kernelName == "elm" + if kernelName == "elm" || kernelName == "python" then import config.overrides config.nixpkgs else if config.withDefaultOverrides == true then config.nixpkgs.poetry2nix.overrides.withDefaults (import config.overrides) @@ -206,7 +206,7 @@ in { defaultText = lib.literalExpression "pkgs.poetry2nix.mkPoetryEnv or pkgs.python3.buildEnv"; example = lib.literalExpression "pkgs.poetry2nix.mkPoetryEnv or pkgs.python3.buildEnv"; - description = lib.mdDoc '' + description = '' The poetry environment for this ${kernelName} kernel. ''; }; diff --git a/poetry.lock b/poetry.lock index 4e1c36dd..b40df010 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,35 +1,34 @@ -# This file is automatically @generated by Poetry 1.8.3 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.8.4 and should not be changed by hand. 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