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CMakeLists.txt
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CMakeLists.txt
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#-----------------------------------------------------------------------------
# Name of the project
project(LogDomainDemonsRegistration)
#-----------------------------------------------------------------------------
# Requires a recent version of CMake
cmake_minimum_required(VERSION 2.6)
#-----------------------------------------------------------------------------
# Include some useful macros
include(${CMAKE_SOURCE_DIR}/IJMacros.txt)
include(${CMAKE_SOURCE_DIR}/SDCMakeMacros.cmake)
set(CMAKE_MODULE_PATH ${CMAKE_MODULE_PATH} ${CMAKE_SOURCE_DIR})
#-----------------------------------------------------------------------------
# Set up some default paths
set(CMAKE_LIBRARY_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib)
set(CMAKE_ARCHIVE_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/lib)
set(CMAKE_RUNTIME_OUTPUT_DIRECTORY ${PROJECT_BINARY_DIR}/bin)
#-----------------------------------------------------------------------------
#Declare any external dependencies that your project may have here.
#examples include: ITK, VTK, JPEG, PNG, OpenGL, ZLIB, Perl, Java
#If you're not sure what name to use, look in the Modules directory of your
#cmake install and check that a file named Find(Package).cmake exists
set(Required_Packages
ITK
)
#-----------------------------------------------------------------------------
#this foreach loads all of the packages that you specified as required.
#It shouldn't need to be modified.
foreach(Package ${Required_Packages})
LOAD_REQUIRED_PACKAGE(${Package})
endforeach(Package)
#-----------------------------------------------------------------------------
#Declare any optional external dependencies that your project may have here.
#examples include: ITK, VTK, JPEG, PNG, OpenGL, ZLIB, Perl, Java
#If you're not sure what name to use, look in the Modules directory of your
#cmake install and check that a file named Find(Package).cmake exists
set(Optional_Packages
# Matlab
)
#-----------------------------------------------------------------------------
#this foreach loads all of the packages that you specified as optional.
#It shouldn't need to be modified.
foreach(Package ${Optional_Packages})
LOAD_OPTIONAL_PACKAGE(${Package})
endforeach(Package)
#-----------------------------------------------------------------------------
#Some packages options are required for this project. Check them now
set(_ITKVersionString "${ITK_VERSION_MAJOR}.${ITK_VERSION_MINOR}.${ITK_VERSION_PATCH}" )
math(EXPR _ITKVersionNum "${ITK_VERSION_MAJOR}*100*100 + ${ITK_VERSION_MINOR}*100 + ${ITK_VERSION_PATCH}")
if( _ITKVersionNum LESS 30800 )
message(SEND_ERROR "The ITK version you want to use (${_ITKVersionString}) is not supported by this project. Please use a more recent version of ITK. The minimum required version is 3.8.0. The recommended version is 3.20.1.")
endif( _ITKVersionNum LESS 30800 )
# If using ITKv3, then a certain revision number MUST be set to "ON".
# These are the default settings in ITKv4.
if(ITK_VERSION_MAJOR LESS 4)
set(ITKv3_REQUIRED_FLAGS
ITK_USE_REVIEW
#ITK_USE_REVIEW_STATISTICS
#ITK_USE_OPTIMIZED_REGISTRATION_METHODS
ITK_USE_CENTERED_PIXEL_COORDINATES_CONSISTENTLY
ITK_USE_ORIENTED_IMAGE_DIRECTION
)
#ITK_USE_PORTABLE_ROUND
#ITK_IMAGE_BEHAVES_AS_ORIENTED_IMAGE
foreach( ITKv3_REQUIRED_FL ${ITKv3_REQUIRED_FLAGS} )
if(NOT ${ITKv3_REQUIRED_FL})
message(SEND_ERROR
"${ITKv3_REQUIRED_FL} has not been set to on when compiling ITKv3\n in ${ITK_DIR}. This option is mandatory for this project to build. Please recompile your ITK installation.")
endif(NOT ${ITKv3_REQUIRED_FL})
endforeach( ITKv3_REQUIRED_FL ${ITKv3_REQUIRED_FLAGS} )
endif()
#-----------------------------------------------------------------------------
#Set any libraries that your project depends on.
#examples: ITKCommon, VTKRendering, etc
set(Libraries ${ITK_LIBRARIES})
#-----------------------------------------------------------------------------
#Set any extra compilation flags here
if(CMAKE_COMPILER_IS_GNUCXX)
# Add some useful warning flags
# Note: -Wall and -Wno-deprecated are already pulled in by
# UseITK.cmake
set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -Wshadow -Wcast-qual")
set(CMAKE_C_FLAGS "${CMAKE_C_FLAGS} -Wshadow -Wcast-qual")
endif(CMAKE_COMPILER_IS_GNUCXX)
#-----------------------------------------------------------------------------
#Build the ITK code if necessary or simply add the corresponding include dirs
if(ITK_VERSION_MAJOR LESS 4)
include_directories(Code-itk3)
add_subdirectory(Code-itk3)
else()
include_directories(Code)
add_subdirectory(Code)
endif()
#-----------------------------------------------------------------------------
#Build the matlab bindings if we have some
if(MATLAB_FOUND)
message("Found Matlab. Matlab wrappers (mex files) and unit tests will be built if there are some in the project.")
if(EXISTS ${CMAKE_SOURCE_DIR}/MatlabCode)
add_subdirectory(MatlabCode)
endif(EXISTS ${CMAKE_SOURCE_DIR}/MatlabCode)
endif(MATLAB_FOUND)
#-----------------------------------------------------------------------------
#Build the unit tests / configure dashboard
include(${CMAKE_ROOT}/Modules/Dart.cmake)
mark_as_advanced(TCL_TCLSH DART_ROOT)
set(BUILDNAME "${BUILDNAME}" CACHE STRING "Name of build on the dashboard")
mark_as_advanced(BUILDNAME)
enable_testing()
if(ITK_VERSION_MAJOR LESS 4)
add_subdirectory(Testing-itk3)
else()
add_subdirectory(Testing)
endif()
#-----------------------------------------------------------------------------
#Build the applications
if(ITK_VERSION_MAJOR LESS 4)
add_subdirectory(Applications-itk3)
else()
add_subdirectory(Applications)
endif()
#-----------------------------------------------------------------------------
# CPack is only used to generate the source package
set(CPACK_PACKAGE_VERSION_MAJOR "0")
set(CPACK_PACKAGE_VERSION_MINOR "0")
set(CPACK_PACKAGE_VERSION_PATCH "6")
set(CPACK_SOURCE_IGNORE_FILES
${CPACK_SOURCE_IGNORE_FILES}
"CTestConfig.cmake"
"/Documents/.*/"
"/Documents/.*/"
"/MatlabCode/"
"README-Matlab\\\\.txt"
"/TestingData/[^R][^a][^t].*[^mr][^ha][^daw]"
"/TestingData/.*\\\\.base\\\\.png$"
"/TestingData/.*\\\\.test\\\\.png$"
"/TestingData/.*\\\\.diff\\\\.png$"
"\\\\.nii$"
"~$"
)
# reinclude cpack to take into account CPACK_SOURCE_IGNORE_FILES
include(CPack)