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abricate cannot find the target sequence when running #212

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dpyGOOD opened this issue Nov 14, 2024 · 0 comments
Open

abricate cannot find the target sequence when running #212

dpyGOOD opened this issue Nov 14, 2024 · 0 comments

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@dpyGOOD
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dpyGOOD commented Nov 14, 2024

I am following the requirements to run the software, but the software cannot find the sequences I uploaded, nor can it find the example sequences that come with the software. What could be the reason for this?
(base) [220322096@mu01 ~]$ abricate assembly.fasta
Using nucl database ncbi: 5386 sequences - 2023-Nov-4
#FILE SEQUENCE START END STRAND GENE COVERAGE COVERAGE_MAP GAPS %COVERAGE %IDENTITY DATABASE ACCESSION PRODUCT RESISTANCE
Processing: assembly.fasta
ERROR: 'assembly.fasta' does not exist, or is unreadable

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