Skip to content

Latest commit

 

History

History
168 lines (144 loc) · 5.19 KB

NEWS.md

File metadata and controls

168 lines (144 loc) · 5.19 KB
Raw

balance 0.2.5

  • Remove dependencies
    • Migrate data from robCompositions to remove dependency
    • Remove ggthemes dependency

balance 0.2.4

  • Update vlr methods
    • Add pairwise argument to ssBetween and ssWithin
    • Add new tests for ss method

balance 0.2.3

  • Update sbp methods
    • Replace sbp.fromPDBA with tree that clusters (1 - theta)
    • Replace sbp.fromADBA with sbp.fromPropd wrapper
    • Deprecate all ldaRule commands
  • Add vlr methods
    • Add ssBetween to calculate between-group log-ratio sums of squares
    • Add ssWithin to calculate within-group log-ratio sums of squares

balance 0.2.2

  • Update sbp methods
    • New ldaRule calculates BETWEEN / WITHIN variance pair-wise
    • New sbp.fromPDBA returns a rooted discriminative tree
    • New sbp.fromADBA returns a distal discriminative tree
    • Suppress messages for propr::propd calls
    • Revise some documentation

balance 0.2.1

  • Update balance.plot method
    • Now plot boxplot OR points (not both)
    • Fix length of range line

balance 0.2.0

  • Update pba methods
    • New argument how supports any SBP routine
    • Add new tests for pba.predict method

balance 0.1.9

  • Update balance methods
    • Check for equivalent names in balance.fromSBP call
    • No longer export balance.fromContrast function
    • Add sbp.fromHclust test

balance 0.1.8

  • Add sbp methods
    • New sbp.subset returns named ternary or ratio balances
    • New sbp.fromRandom returns random binary tree
    • New sbp.fromABA returns modified PBA tree
    • New sbp.fromPropdreturns theta tree

balance 0.1.7

  • Update documentation
    • Place all pba functions within ?pba help file
    • Make pba method help more accessible

balance 0.1.6

  • Update balance methods
    • balance now returns an S4 object called bplot
    • bplot has [[ method for backwards compatibility
    • balance.fromContrast now 2x faster
  • Update documentation
    • An example is now provided for each function

balance 0.1.5

  • Update pba methods
    • pba.plot no longer prints variance when y is provided
    • vlr now uses less peak RAM

balance 0.1.4

  • Extend zero handling
    • vlr will now replace 0s with next smallest value
    • balance.fromSBP will now replace 0s with next smallest value
  • Extend pba methods
    • New pba.show method shows object structure
    • New pba.plot method plots balances in 2D

balance 0.1.3

  • Add functions to perform a principal balance analysis
    • New vlr function calculates log-ratio variance using matrix algebra
    • New sbp.fromPBA function builds an SBP of principal balances
    • New pba object
      • New pba function constructs pba object
      • New predict method deploys pba model

balance 0.1.2

  • Add functions to create an SBP matrix
    • New sbp.fromHclust creates SBP matrix from hclust object
    • New sbp.sort sorts an SBP matrix predictably

balance 0.1.1

  • Modify balance.plot function
    • All points now overlap with their boxplot when boxplot.split = TRUE
  • Revise vignette and README
    • Use balance.plot() instead of balance()

balance 0.1.0

  • Modify function names
    • Rename balance() to balance.plot()
    • Create balance() wrapper for backwards compatibility
    • Rename balance.compute() to balance.fromContrast()
    • Rename balances() to balance.fromSBP()

balance 0.0.9

  • Add CITATION to package and DESCRIPTION

balance 0.0.8

  • Update balance method
    • Remove size.line argument and do not set size for !weigh.var

balance 0.0.7

  • Update balance method
    • Fix bug caused by using n.group in presence of unique rownames

balance 0.0.6

  • Update balance method
    • Use weigh.var argument to weigh line width by explained variance
    • Use size.line argument to alter line width factor

balance 0.0.5

  • Update balance method
    • Compute balances using exp(mean(log(x))) to prevent overflow
    • Remove "linetype" aesthetic from partition figure

balance 0.0.4

  • Update balance method
    • Re-write robCompositions::balances call as balances function
    • Re-write reshape2::melt call as wide2long function

balance 0.0.3

  • Update balance method
    • Coerce input as data.frame to prevent errors

balance 0.0.2

  • Update balance method
    • Fix the automatic sorting of serial binary partition matrix
    • Add test that sorting does not alter results

balance 0.0.1

  • Create package skeleton
    • Add balance.combine function to merge figures
    • Add balance function to visualize balances
    • Complete package DESCRIPTION
    • Create README