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Yes, you should check BVLC/caffe#4159 I think I have merged this with a branch in caffe-crfasrnn. To use this in the default branch, you probably have to do some changes. Feel free to submit a PR.
Is CuDNN 5 supported? I installed vanilla caffe w/out any problem, but crf-rnn caffe keeps telling me
./include/caffe/util/cudnn.hpp: In function ‘void caffe::cudnn::createPoolingDesc(cudnnPoolingStruct**, caffe::PoolingParameter_PoolMethod, cudnnPoolingMode_t*, int, int, int, int, int, int)’:
./include/caffe/util/cudnn.hpp:124:41: error: too few arguments to function ‘cudnnStatus_t cudnnSetPooling2dDescriptor(cudnnPoolingDescriptor_t, cudnnPoolingMode_t, cudnnNanPropagation_t, int, int, int, int, int, int)’
pad_h, pad_w, stride_h, stride_w));
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