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entire AR gene families missed in reporting #2

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chrisgulvik opened this issue Jan 19, 2016 · 0 comments
Open

entire AR gene families missed in reporting #2

chrisgulvik opened this issue Jan 19, 2016 · 0 comments

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@chrisgulvik
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I noticed (5) hits to the 'AacAad_AGly' AR gene family in my 'BLASTN' output which were not reported in the SSTAR output below. There are no other blast hits to this AR gene family, so it's actually missing entire AR gene families.

Example SSTAR Output:
Gene Contig Seq similarity Alignment length Gene length
A potentially new Penicillin_Binding_Protein_Ecoli_Bla discovered SAMN04014842_1 98.69% 1902 1902
A potentially new AMPH_Ecoli_Bla discovered SAMN04014842_1 97.06% 1158 1158
A potentially new AmpC2_Ecoli_Bla discovered SAMN04014842_10 97.80% 1134 1134
A potentially new Aac3-Ib_AGly discovered SAMN04014842_47 99.10% 554 1005
A potentially new OmpF-ecoli discovered SAMN04014842_2 98.62% 1089 1089
TetA SAMN04014842_31 100.00% 1275 1275
MphA SAMN04014842_33 100.00% 906 906
KPC-3 SAMN04014842_23 100.00% 882 882
SulI SAMN04014842_33 100.00% 840 840
OXA-1 SAMN04014842_47 100.00% 831 831

Missing:
A potentially new AacAad_AGly discovered SAMN04014842_47 99% 588 1392

BLASTN output file:
43__AacAad_AGly__Aac6-31__1676 SAMN04014842_47 84.59 519 80 0 1 519 183 701 1e-146 516 519
43__AacAad_AGly__Aac6-Ib__1677 SAMN04014842_47 99.49 587 3 0 20 606 115 701 0.0 1068 606
43__AacAad_AGly__AacA4__1679 SAMN04014842_47 99.29 565 4 0 3 567 137 701 0.0 1022 567
43__AacAad_AGly__Ant3''Ih-Aac6-IId__1684 SAMN04014842_47 99.49 588 3 0 805 1392 114 701 0.0 1070 1392
43__AacAad_AGly__Aac6Ib-cr__1678 SAMN04014842_47 99.81 519 1 0 1 519 183 701 0.0 953 519

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