Some .ini preferences being ignored

[matijaerceg]

Here's my .ini

ORGDIR=/media/fat/_Arcade Organized
PREPEND_YEAR=true
VERBOSE=true
AZ_DIR=false
REGION_DIR=false
PLATFORM_DIR=false
CORE_DIR=false
MANUFACTURER_DIR=false
SERIES_DIR=false
YEAR_DIR=false
DECADES_DIR=false
MOVE_INPUTS=false
NUM_BUTTONS=false
SPECIAL_CONTROLS=false
NUM_CONTROLLERS=false
COCKTAIL_DIR=false
NUM_MONITORS=false
HOMEBREW=0
BOOTLEG=0
ENHANCEMENTS=0
TRANSLATIONS=0

But all the video and inputs folders show up on the MiSTer, even after I've deleted the arcade organized folder via the script:

[matijaerceg]

Looking at the log, looks like the ini file is not being read correctly:

Running Arcade Organizer

Reading INI (update_arcade-organizer.ini):
OK

Arcade Organizer 2.0
Arguments:
ARCADE_OFFSET_DIRECTORY=/media/fat/_Arcade/_Arcade Offset
AZ_DIR=false
BEST_OF_DIR=true
BOOTLEG=0
CATEGORY_DIR=true
CORE_DIR=false
DECADES_DIR=false
FLIP=true
HOMEBREW=0
MAD_DB=https://raw.githubusercontent.com/Toryalai1/MiSTer_ArcadeDatabase/db/mad_db.json.zip
MANUFACTURER_DIR=false
MOVE_INPUTS_DIR=true
MOVE_INPUTS_NOT_SUPPORTED=[]
MRADIR=/media/fat/_Arcade/
NO_SYMLINKS=false
NUM_BUTTONS_DIR=true
NUM_BUTTONS_MAXIMUM=9999
NUM_MONITORS_DIR=true
ORGDIR=/media/fat/_Arcade Organized
PLATFORM_DIR=false
PLAYERS_DIR=true
PLAYERS_NOT_SUPPORTED=[]
PREPEND_YEAR=true
REGION_DIR=false
REGION_MAIN=DEV PREFERRED
REGION_OTHERS=1
RESOLUTION_15KHZ=true
RESOLUTION_24KHZ=true
RESOLUTION_31KHZ=true
RESOLUTION_DIR=true
ROTATION_0=true
ROTATION_180=true
ROTATION_270=true
ROTATION_90=true
ROTATION_DIR=true
SERIES_DIR=false
SKIPALTS=true
SPECIAL_CONTROLS_DIR=true
SPECIAL_CONTROLS_NOT_SUPPORTED=[]
TOPDIR=
VERBOSE=true
YEAR_DIR=false
YEAR_HIGH=9999
YEAR_LOW=0