Bioconductor 3.16
Major changes
- Improve compatibility with the R {anndata} package. This required modifying conversion functions so that Python objects are explicitly converted rather than relying on automatic conversion. (PR #76 @rcannood, fixes #75)
- Added support for numpy recarrays. This solves a long-standing issue and allows results from scanpy's
rank_genes_groups()
function to be read. (PR #81, fixes #45, #28)
Minor changes
- The Python version is now pinned in the anndata v0.7.6 environment for compatibility with changes in {basilisk}
- Instantiate Python environments so they can be properly picked up by
basilisk::configureBasiliskEnv()
(Fixes #66) - Allow missing
obs
/var
names whenuse_hdf5 = TRUE
(Fixes #65) - Minor changes to the UI functions for compatibility with {cli} v3.4.0
- Minor changes for compatibility with {Matrix} v1.4-2
- Improvements to the UI for warnings
- Updates and improvements to tests
Full Changelog: v1.7.0...v1.8.0