Run roxygenize

theislab · Mar 5, 2023 · a2e8183 · a2e8183
1 parent 4d5094a
commit a2e8183
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Showing 4 changed files with 11 additions and 1 deletion.
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -68,7 +68,7 @@ BugReports: https://github.com/theislab/zellkonverter/issues
 Encoding: UTF-8
 LazyData: true
 Roxygen: list(markdown = TRUE)
-RoxygenNote: 7.2.1
+RoxygenNote: 7.2.3
 Language: en-GB
 StagedInstall: no
 VignetteBuilder: knitr
diff --git a/NAMESPACE b/NAMESPACE
@@ -29,8 +29,10 @@ importFrom(SingleCellExperiment,"colPairs<-")
 importFrom(SingleCellExperiment,"reducedDims<-")
 importFrom(SingleCellExperiment,"rowPairs<-")
 importFrom(SingleCellExperiment,SingleCellExperiment)
+importFrom(SummarizedExperiment,"assays<-")
 importFrom(SummarizedExperiment,"colData<-")
 importFrom(SummarizedExperiment,"rowData<-")
+importFrom(SummarizedExperiment,assays)
 importFrom(SummarizedExperiment,colData)
 importFrom(SummarizedExperiment,rowData)
 importFrom(basilisk,basiliskRun)
@@ -43,3 +45,4 @@ importFrom(reticulate,import_builtins)
 importFrom(reticulate,py_to_r)
 importFrom(reticulate,r_to_py)
 importFrom(utils,capture.output)
+importFrom(utils,compareVersion)
diff --git a/R/read.R b/R/read.R
@@ -99,6 +99,7 @@ readH5AD <- function(file, X_name = NULL, use_hdf5 = FALSE,
                 ...)
 }
 
+#' @importFrom utils compareVersion
 #' @importFrom S4Vectors I DataFrame wmsg
 #' @importFrom SummarizedExperiment assays assays<- rowData colData rowData<- colData<-
 #' @importFrom SingleCellExperiment SingleCellExperiment reducedDims<- colPairs<- rowPairs<-
@@ -360,6 +361,7 @@ readH5AD <- function(file, X_name = NULL, use_hdf5 = FALSE,
     obj
 }
 
+#' @importFrom utils compareVersion
 #' @importFrom S4Vectors DataFrame
 .read_dim_data <- function(file, path, fields, version) {
     col_names <- setdiff(names(fields), c("__categories", "_index"))

diff --git a/man/zellkonverter-package.Rd b/man/zellkonverter-package.Rd