From 74911f59a4be3f5f7ac8d33896ceb978e5f8cc04 Mon Sep 17 00:00:00 2001 From: GitHub Actions Date: Mon, 14 Aug 2023 12:11:07 +0000 Subject: [PATCH] [status] 2023-08-14 12:11:07 UTC --- README.md | 46 ++++++++++----------- index.html | 115 ++++++++++++++++++++++++++--------------------------- repos.csv | 78 +++++++++++++++++++----------------- 3 files changed, 121 insertions(+), 118 deletions(-) diff --git a/README.md b/README.md index 28120d7..5858dea 100644 --- a/README.md +++ b/README.md @@ -2,60 +2,60 @@ GitHub Dashboard ================ ![](https://github.com/gadenbuie/status/workflows/Render%20Status/badge.svg) -2023-08-13 12:07:35 UTC +2023-08-14 12:08:54 UTC | Repo | Stars | Subscribers | Issues | Forks | Status | Commit | |:----------------------------------------------------------------------------------------------------|------:|------------:|-------:|------:|:----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------|:------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------| -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 450 | 16 | 43 | 78 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599630) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599625) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599624) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599627) | 84bc8a | -| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 450 | 16 | 43 | 78 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 452 | 16 | 42 | 78 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599630) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599625) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599624) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599627) | 84bc8a | +| [theislab/single-cell-best-practices](https://github.com/theislab/single-cell-best-practices) | 452 | 16 | 42 | 78 | [![](https://github.com/theislab/single-cell-best-practices/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/4784044952) | c06ca9 | | [theislab/scvelo](https://github.com/theislab/scvelo) | 347 | 15 | 61 | 96 | [![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673828) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673829) | d89ca6 | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 250 | 8 | 18 | 30 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) | 1287de | -| [theislab/cellrank](https://github.com/theislab/cellrank) | 250 | 8 | 18 | 30 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313313) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313320) | d88b4d | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 250 | 8 | 19 | 30 | [![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) | 1287de | +| [theislab/cellrank](https://github.com/theislab/cellrank) | 250 | 8 | 19 | 30 | [![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5850328010) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5850369600) | d88b4d | | [theislab/scib](https://github.com/theislab/scib) | 226 | 17 | 26 | 44 | [![](https://github.com/theislab/scib/workflows/Pre-commit/badge.svg)](https://github.com/theislab/scib/actions/runs/2276639868) | 96556a | | [theislab/scib](https://github.com/theislab/scib) | 226 | 17 | 26 | 44 | [![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) | ed3e28 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 129 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4859312807) | 96fcf8 | -| [theislab/sfaira](https://github.com/theislab/sfaira) | 129 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/5844137106) | c50240 | +| [theislab/sfaira](https://github.com/theislab/sfaira) | 129 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/5850283582) | c50240 | | [theislab/sfaira](https://github.com/theislab/sfaira) | 129 | 8 | 177 | 13 | [![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4734866287) | d1a9e6 | +| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 97 | 7 | 14 | 14 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/5794060823) | 9b6e9d | +| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 97 | 7 | 14 | 14 | [![](https://github.com/theislab/anndata2ri/workflows/Publish%20Python%20Package/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/5738419497) | ae804b | | [theislab/zellkonverter](https://github.com/theislab/zellkonverter) | 97 | 6 | 16 | 20 | [![](https://github.com/theislab/zellkonverter/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/zellkonverter/actions/runs/5055712904) | b56718 | -| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 96 | 7 | 14 | 14 | [![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/5794060823) | 9b6e9d | -| [theislab/anndata2ri](https://github.com/theislab/anndata2ri) | 96 | 7 | 14 | 14 | [![](https://github.com/theislab/anndata2ri/workflows/Publish%20Python%20Package/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/5738419497) | ae804b | | [theislab/ncem](https://github.com/theislab/ncem) | 91 | 6 | 21 | 12 | [![](https://github.com/theislab/ncem/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ncem/actions/runs/5397747238) [![](https://github.com/theislab/ncem/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ncem/actions/runs/5397747236) | 0404ba | | [theislab/ncem](https://github.com/theislab/ncem) | 91 | 6 | 21 | 12 | [![](https://github.com/theislab/ncem/workflows/Labeler/badge.svg)](https://github.com/theislab/ncem/actions/runs/5392074704) | 216fd5 | | [theislab/ncem](https://github.com/theislab/ncem) | 91 | 6 | 21 | 12 | [![](https://github.com/theislab/ncem/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/ncem/actions/runs/1764433339) | cd0ea2 | | [theislab/destiny](https://github.com/theislab/destiny) | 62 | 5 | 29 | 11 | [![](https://github.com/theislab/destiny/workflows/R-CMD-check-bioc/badge.svg)](https://github.com/theislab/destiny/actions/runs/3288756982) | 8f083f | -| [theislab/moscot](https://github.com/theislab/moscot) | 60 | 4 | 30 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/5787079842) | 4ffcf1 | +| [theislab/moscot](https://github.com/theislab/moscot) | 61 | 4 | 30 | 6 | [![](https://github.com/theislab/moscot/workflows/Deployment/badge.svg)](https://github.com/theislab/moscot/actions/runs/5787079842) | 4ffcf1 | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 49 | 5 | 32 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Test%20windows%20stuff/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5577003787) | 84d33c | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 49 | 5 | 32 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Build%20ehrapy%20Package/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423886) [![](https://github.com/theislab/ehrapy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423940) [![](https://github.com/theislab/ehrapy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423911) [![](https://github.com/theislab/ehrapy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423897) [![](https://github.com/theislab/ehrapy/workflows/Run%20ehrapy%20Tests/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5823423896) | a720b7 | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 49 | 5 | 32 | 6 | [![](https://github.com/theislab/ehrapy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/1954796372) | b50f73 | | [theislab/ehrapy](https://github.com/theislab/ehrapy) | 49 | 5 | 32 | 6 | [![](https://github.com/theislab/ehrapy/workflows/Labeler/badge.svg)](https://github.com/theislab/ehrapy/actions/runs/5737904362) | f7843e | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 21 | 7 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5784170279) | 15d41f | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 21 | 7 | [![](https://github.com/theislab/pertpy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/pertpy/actions/runs/1954811240) | 2c96cd | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 21 | 7 | [![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5832543382) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5832543371) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5832543370) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5832543372) | 35e5c6 | -| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 21 | 7 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | -| [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 37 | 7 | 14 | 25 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 24 | 7 | [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5851160070) | 14b31f | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 24 | 7 | [![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5784170279) | 15d41f | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 24 | 7 | [![](https://github.com/theislab/pertpy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/pertpy/actions/runs/1954811240) | 2c96cd | +| [theislab/pertpy](https://github.com/theislab/pertpy) | 38 | 5 | 24 | 7 | [![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) | \” title=“Revert”Deleted JaxscgenPlot”“\>404835 | +| [theislab/scib-pipeline](https://github.com/theislab/scib-pipeline) | 38 | 7 | 14 | 25 | [![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) | 1180bc | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825767) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4348825761) | 11ffbb | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/.github/workflows/test.yml/badge.svg)](https://github.com/theislab/batchglm/actions/runs/1954556605) | aa879d | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Labeler/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3209792663) [![](https://github.com/theislab/batchglm/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/batchglm/actions/runs/4898948664) | b893fd | | [theislab/batchglm](https://github.com/theislab/batchglm) | 26 | 4 | 46 | 9 | [![](https://github.com/theislab/batchglm/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/batchglm/actions/runs/3213182368) | e78395 | -| [theislab/spapros](https://github.com/theislab/spapros) | 18 | 3 | 23 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940143488) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466680) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466678) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/5844558733) | 28b974 | +| [theislab/spapros](https://github.com/theislab/spapros) | 18 | 3 | 23 | 5 | [![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940143488) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466680) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466678) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/5850764118) | 28b974 | | [theislab/spapros](https://github.com/theislab/spapros) | 18 | 3 | 23 | 5 | [![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940112493) | 32aa90 | | [theislab/mubind](https://github.com/theislab/mubind) | 16 | 2 | 30 | 0 | [![](https://github.com/theislab/mubind/workflows/pre-commit/badge.svg)](https://github.com/theislab/mubind/actions/runs/2495279924) [![](https://github.com/theislab/mubind/workflows/Test/badge.svg)](https://github.com/theislab/mubind/actions/runs/2495279925) | 0e727d | | [theislab/scanpydoc](https://github.com/theislab/scanpydoc) | 11 | 6 | 7 | 5 | [![](https://github.com/theislab/scanpydoc/workflows/Python%20tests/badge.svg)](https://github.com/theislab/scanpydoc/actions/runs/5794059584) | 86f284 | -| [theislab/geome](https://github.com/theislab/geome) | 10 | 3 | 1 | 2 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | +| [theislab/geome](https://github.com/theislab/geome) | 10 | 3 | 3 | 2 | [![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) | 5bf0cd | | [theislab/hadge](https://github.com/theislab/hadge) | 8 | 2 | 1 | 2 | [![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg)](https://github.com/theislab/hadge/actions/runs/5787046249) [![](https://github.com/theislab/hadge/workflows/pre-commit/badge.svg)](https://github.com/theislab/hadge/actions/runs/5787046250) | b00158 | -| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/5779565520) | bd10c2 | -| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 5 | 1 | 2 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/5779574639) | f520dc | +| [theislab/cellrank_notebooks](https://github.com/theislab/cellrank_notebooks) | 6 | 4 | 1 | 5 | [![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/5850338638) | bd10c2 | +| [theislab/moscot_notebooks](https://github.com/theislab/moscot_notebooks) | 5 | 1 | 2 | 2 | [![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/5850350634) | f520dc | | [theislab/ehrapy-datasets](https://github.com/theislab/ehrapy-datasets) | 4 | 2 | 0 | 2 | [![](https://github.com/theislab/ehrapy-datasets/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/ehrapy-datasets/actions/runs/4510904353) | cb7707 | | [theislab/augurpy](https://github.com/theislab/augurpy) | 2 | 2 | 10 | 0 | [![](https://github.com/theislab/augurpy/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/augurpy/actions/runs/1680337694) | 1ea5dc | | [theislab/augurpy](https://github.com/theislab/augurpy) | 2 | 2 | 10 | 0 | [![](https://github.com/theislab/augurpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/augurpy/actions/runs/2052235258) [![](https://github.com/theislab/augurpy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/augurpy/actions/runs/2052235256) | 8a5e8a | -| [theislab/batch_correction_cellpainting](https://github.com/theislab/batch_correction_cellpainting) | 1 | 1 | 12 | 0 | [![](https://github.com/theislab/batch_correction_cellpainting/workflows/PR%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5831733628) [![](https://github.com/theislab/batch_correction_cellpainting/workflows/Package%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5831733629) | 6eef34 | +| [theislab/batch_correction_cellpainting](https://github.com/theislab/batch_correction_cellpainting) | 1 | 1 | 12 | 0 | [![](https://github.com/theislab/batch_correction_cellpainting/workflows/PR%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5853914690) [![](https://github.com/theislab/batch_correction_cellpainting/workflows/Package%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5853914684) | 2c6bf5 | | [theislab/bindome](https://github.com/theislab/bindome) | 1 | 3 | 5 | 1 | [![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) | 3cb12b | | [theislab/transcription_factor_activity](https://github.com/theislab/transcription_factor_activity) | 1 | 1 | 5 | 1 | [![](https://github.com/theislab/transcription_factor_activity/workflows/Check%20Build/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287206) [![](https://github.com/theislab/transcription_factor_activity/workflows/Test/badge.svg)](https://github.com/theislab/transcription_factor_activity/actions/runs/5133287208) | ced39f | | [theislab/cellrank2_reproducibility](https://github.com/theislab/cellrank2_reproducibility) | 0 | 0 | 0 | 0 | [![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369762) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369764) | 96c815 | -| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/5847158459) | 4adc21 | +| [theislab/gh-dashboard](https://github.com/theislab/gh-dashboard) | 0 | 2 | 0 | 0 | [![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/5855424559) | a9bd81 | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) | 12aa73 | -| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5570814130) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5570814133) | 2e23ba | | [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) | 63e94a | +| [theislab/idtrack](https://github.com/theislab/idtrack) | 0 | 1 | 6 | 0 | [![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5851023407) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5851023404) | 9931b6 | | [theislab/sfaira-portal](https://github.com/theislab/sfaira-portal) | 0 | 4 | 2 | 0 | [![](https://github.com/theislab/sfaira-portal/workflows/Build-site/badge.svg)](https://github.com/theislab/sfaira-portal/actions/runs/1739478412) | a06e26 | ## Repos without Github Actions @@ -65,7 +65,7 @@ GitHub Dashboard | [theislab/single-cell-tutorial](https://github.com/theislab/single-cell-tutorial) | 1117 | 30 | 21 | 415 | | [theislab/scarches](https://github.com/theislab/scarches) | 268 | 14 | 26 | 46 | | [theislab/dca](https://github.com/theislab/dca) | 222 | 12 | 29 | 67 | -| [theislab/scgen](https://github.com/theislab/scgen) | 208 | 10 | 15 | 47 | +| [theislab/scgen](https://github.com/theislab/scgen) | 208 | 10 | 16 | 47 | | [theislab/diffxpy](https://github.com/theislab/diffxpy) | 163 | 9 | 104 | 22 | | [theislab/paga](https://github.com/theislab/paga) | 163 | 10 | 21 | 29 | | [theislab/kBET](https://github.com/theislab/kBET) | 131 | 9 | 8 | 23 | @@ -74,8 +74,8 @@ GitHub Dashboard | [theislab/chemCPA](https://github.com/theislab/chemCPA) | 58 | 5 | 8 | 11 | | [theislab/AutoGeneS](https://github.com/theislab/AutoGeneS) | 50 | 6 | 6 | 8 | | [theislab/trVAE](https://github.com/theislab/trVAE) | 49 | 7 | 2 | 8 | +| [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 41 | 6 | 2 | 11 | | [theislab/pseudodynamics](https://github.com/theislab/pseudodynamics) | 40 | 7 | 0 | 6 | -| [theislab/scib-reproducibility](https://github.com/theislab/scib-reproducibility) | 40 | 6 | 2 | 11 | | [theislab/spatial_scog_workshop_2022](https://github.com/theislab/spatial_scog_workshop_2022) | 37 | 9 | 0 | 24 | | [theislab/tcellmatch](https://github.com/theislab/tcellmatch) | 35 | 9 | 3 | 7 | | [theislab/cpa](https://github.com/theislab/cpa) | 33 | 4 | 14 | 9 | diff --git 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Repos without Github Actions

- - - - + + + + - + + + - - diff --git a/repos.csv b/repos.csv index 154d024..de38509 100644 --- a/repos.csv +++ b/repos.csv @@ -25,10 +25,10 @@ theislab,MRGR_stress_analysis,theislab/MRGR_stress_analysis,0,3,0,0,FALSE,https: theislab,MetaMap,theislab/MetaMap,11,7,0,8,FALSE,https://github.com/theislab/MetaMap,11,NA,NA,NA theislab,MetaMap-web,theislab/MetaMap-web,0,4,2,0,FALSE,https://github.com/theislab/MetaMap-web,0,NA,NA,NA theislab,PathReg,theislab/PathReg,7,3,0,0,FALSE,https://github.com/theislab/PathReg,7,NA,NA,NA -theislab,anndata2ri,theislab/anndata2ri,96,7,14,14,FALSE,https://github.com/theislab/anndata2ri,96,9b6e9d70d229850eb7a813a5c89d27c1ec714881,"[pre-commit.ci] pre-commit autoupdate (#123) +theislab,anndata2ri,theislab/anndata2ri,97,7,14,14,FALSE,https://github.com/theislab/anndata2ri,97,9b6e9d70d229850eb7a813a5c89d27c1ec714881,"[pre-commit.ci] pre-commit autoupdate (#123) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>",[![](https://github.com/theislab/anndata2ri/workflows/Unit%20Tests/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/5794060823) -theislab,anndata2ri,theislab/anndata2ri,96,7,14,14,FALSE,https://github.com/theislab/anndata2ri,96,ae804b66f63138526cc5c5e0e55366d001457153,"[pre-commit.ci] pre-commit autoupdate (#120) +theislab,anndata2ri,theislab/anndata2ri,97,7,14,14,FALSE,https://github.com/theislab/anndata2ri,97,ae804b66f63138526cc5c5e0e55366d001457153,"[pre-commit.ci] pre-commit autoupdate (#120) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> Co-authored-by: Philipp A ",[![](https://github.com/theislab/anndata2ri/workflows/Publish%20Python%20Package/badge.svg)](https://github.com/theislab/anndata2ri/actions/runs/5738419497) @@ -53,7 +53,7 @@ Signed-off-by: dependabot[bot] ",[![](https://github.com/the theislab,autoencoderPS,theislab/autoencoderPS,1,3,0,2,FALSE,https://github.com/theislab/autoencoderPS,1,NA,NA,NA theislab,bartSeq,theislab/bartSeq,1,5,1,5,FALSE,https://github.com/theislab/bartSeq,1,NA,NA,NA theislab,bartseq-pipeline,theislab/bartseq-pipeline,2,4,0,3,FALSE,https://github.com/theislab/bartseq-pipeline,2,NA,NA,NA -theislab,batch_correction_cellpainting,theislab/batch_correction_cellpainting,1,1,12,0,FALSE,https://github.com/theislab/batch_correction_cellpainting,1,6eef34b8141710bca3e88e320d81a5f8a6ed9025,Add cytominer normalization,[![](https://github.com/theislab/batch_correction_cellpainting/workflows/PR%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5831733628) [![](https://github.com/theislab/batch_correction_cellpainting/workflows/Package%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5831733629) +theislab,batch_correction_cellpainting,theislab/batch_correction_cellpainting,1,1,12,0,FALSE,https://github.com/theislab/batch_correction_cellpainting,1,2c6bf54c627e069a03b1a5f4c54986459030c343,new pycytominer nb,[![](https://github.com/theislab/batch_correction_cellpainting/workflows/PR%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5853914690) [![](https://github.com/theislab/batch_correction_cellpainting/workflows/Package%20checks/badge.svg)](https://github.com/theislab/batch_correction_cellpainting/actions/runs/5853914684) theislab,batchglm,theislab/batchglm,26,4,46,9,FALSE,https://github.com/theislab/batchglm,26,11ffbbd5bd63dde1db9adc3b7c78a90d978fa1a6,"[DEPENDABOT]: Bump dask from 2021.3.0 to 2023.3.0 in /docs Bumps [dask](https://github.com/dask/dask) from 2021.3.0 to 2023.3.0. @@ -77,13 +77,13 @@ Important cookietemple template update 2.1.1 released!",[![](https://github.com/ theislab,bindome,theislab/bindome,1,3,5,1,FALSE,https://github.com/theislab/bindome,1,3cb12b5e3c71749003718d8d1768e3b9790d8544,minor fixes,[![](https://github.com/theislab/bindome/workflows/Check%20Build/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252866) [![](https://github.com/theislab/bindome/workflows/Test/badge.svg)](https://github.com/theislab/bindome/actions/runs/3619252869) theislab,campa,theislab/campa,9,4,4,3,FALSE,https://github.com/theislab/campa,9,NA,NA,NA theislab,campa_ana,theislab/campa_ana,2,4,0,0,FALSE,https://github.com/theislab/campa_ana,2,NA,NA,NA -theislab,cellrank,theislab/cellrank,250,8,18,30,FALSE,https://github.com/theislab/cellrank,250,1287deed96ee4fa49aa50e948688e75c3d173870,Change core development order,[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) -theislab,cellrank,theislab/cellrank,250,8,18,30,FALSE,https://github.com/theislab/cellrank,250,d88b4d2fd00c658dd05534a2ed31964e0f2ca862,"Fix journal entry, small modifications (#1109)",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313313) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5788313320) +theislab,cellrank,theislab/cellrank,250,8,19,30,FALSE,https://github.com/theislab/cellrank,250,1287deed96ee4fa49aa50e948688e75c3d173870,Change core development order,[![](https://github.com/theislab/cellrank/workflows/Deployment/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5610501108) +theislab,cellrank,theislab/cellrank,250,8,19,30,FALSE,https://github.com/theislab/cellrank,250,d88b4d2fd00c658dd05534a2ed31964e0f2ca862,"Fix journal entry, small modifications (#1109)",[![](https://github.com/theislab/cellrank/workflows/Test/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5850328010) [![](https://github.com/theislab/cellrank/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank/actions/runs/5850369600) theislab,cellrank2_reproducibility,theislab/cellrank2_reproducibility,0,0,0,0,FALSE,https://github.com/theislab/cellrank2_reproducibility,0,96c815f78ecbb75d9dc12f0ee995851acf314add,"Add `lint.yml` (#40) Adds CI to check linting on push to `main` or when opeing a PR to merge into `main`.",[![](https://github.com/theislab/cellrank2_reproducibility/workflows/deploy-jupyter-book/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369762) [![](https://github.com/theislab/cellrank2_reproducibility/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank2_reproducibility/actions/runs/5661369764) -theislab,cellrank_notebooks,theislab/cellrank_notebooks,6,4,1,5,FALSE,https://github.com/theislab/cellrank_notebooks,6,bd10c2c1a7f7ddf5674403997bc2704533b85367,Update overview figures,[![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/5779565520) +theislab,cellrank_notebooks,theislab/cellrank_notebooks,6,4,1,5,FALSE,https://github.com/theislab/cellrank_notebooks,6,bd10c2c1a7f7ddf5674403997bc2704533b85367,Update overview figures,[![](https://github.com/theislab/cellrank_notebooks/workflows/Lint/badge.svg)](https://github.com/theislab/cellrank_notebooks/actions/runs/5850338638) theislab,cellrank_reproducibility,theislab/cellrank_reproducibility,13,2,0,7,FALSE,https://github.com/theislab/cellrank_reproducibility,13,NA,NA,NA theislab,cellrank_reproducibility_preprint,theislab/cellrank_reproducibility_preprint,4,2,0,0,FALSE,https://github.com/theislab/cellrank_reproducibility_preprint,4,NA,NA,NA theislab,chemCPA,theislab/chemCPA,58,5,8,11,FALSE,https://github.com/theislab/chemCPA,58,NA,NA,NA @@ -121,10 +121,10 @@ theislab,extended-single-cell-best-practices-container,theislab/extended-single- theislab,feature-attribution-sc,theislab/feature-attribution-sc,4,2,8,1,FALSE,https://github.com/theislab/feature-attribution-sc,4,NA,NA,NA theislab,flexible_priors,theislab/flexible_priors,2,2,0,0,FALSE,https://github.com/theislab/flexible_priors,2,NA,NA,NA theislab,gastrulation_analysis,theislab/gastrulation_analysis,7,4,0,1,FALSE,https://github.com/theislab/gastrulation_analysis,7,NA,NA,NA -theislab,geome,theislab/geome,10,3,1,2,FALSE,https://github.com/theislab/geome,10,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update +theislab,geome,theislab/geome,10,3,3,2,FALSE,https://github.com/theislab/geome,10,5bf0cd07b2ea7fa224a37f69232542a9e686c5bf,"Merge pull request #31 from theislab/template-update Automated template update from cookiecutter-scverse",[![](https://github.com/theislab/geome/workflows/Sync%20Template/badge.svg)](https://github.com/theislab/geome/actions/runs/4904831582) -theislab,gh-dashboard,theislab/gh-dashboard,0,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,0,4adc21dc6904f433a508e107e4483bb55961badd,[status] 2023-08-12 12:10:21 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/5847158459) +theislab,gh-dashboard,theislab/gh-dashboard,0,2,0,0,FALSE,https://github.com/theislab/gh-dashboard,0,a9bd81ec7cb658d47ca46ca58e783579dbfd7654,[status] 2023-08-13 12:09:14 UTC,[![](https://github.com/theislab/gh-dashboard/workflows/Render%20Status/badge.svg)](https://github.com/theislab/gh-dashboard/actions/runs/5855424559) theislab,graph_abstraction,theislab/graph_abstraction,26,8,0,10,FALSE,https://github.com/theislab/graph_abstraction,26,NA,NA,NA theislab,greatpy,theislab/greatpy,8,3,3,0,FALSE,https://github.com/theislab/greatpy,8,NA,NA,NA theislab,gut_lineage,theislab/gut_lineage,2,3,0,3,FALSE,https://github.com/theislab/gut_lineage,2,NA,NA,NA @@ -134,23 +134,22 @@ Fix RTD",[![](https://github.com/theislab/hadge/workflows/sphinx-docs/badge.svg) theislab,idtrack,theislab/idtrack,0,1,6,0,FALSE,https://github.com/theislab/idtrack,0,12aa73e176bef9d1f91e9dc8c68010a1ac430c18,"Merge pull request #55 from theislab/development Development",[![](https://github.com/theislab/idtrack/workflows/Labeler/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5369045662) -theislab,idtrack,theislab/idtrack,0,1,6,0,FALSE,https://github.com/theislab/idtrack,0,2e23ba07ffb1135c7841e503253dfbd5f8550082,"[DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.4.2 to 1.8.8 +theislab,idtrack,theislab/idtrack,0,1,6,0,FALSE,https://github.com/theislab/idtrack,0,63e94a5073ee98195415a955e15a998f55591826,"Merge pull request #39 from theislab/release -Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.4.2 to 1.8.8. -- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) -- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.4.2...v1.8.8) +Release",[![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) +theislab,idtrack,theislab/idtrack,0,1,6,0,FALSE,https://github.com/theislab/idtrack,0,9931b6c993347dc240dd0c1ddfc9ca47bbb01003,"[DEPENDABOT]: Bump mypy from 1.4.0 to 1.5.0 + +Bumps [mypy](https://github.com/python/mypy) from 1.4.0 to 1.5.0. +- [Commits](https://github.com/python/mypy/compare/v1.4.0...v1.5.0) --- updated-dependencies: -- dependency-name: pypa/gh-action-pypi-publish - dependency-type: direct:production +- dependency-name: mypy + dependency-type: direct:development update-type: version-update:semver-minor ... -Signed-off-by: dependabot[bot] ",[![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5570814130) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5570814133) -theislab,idtrack,theislab/idtrack,0,1,6,0,FALSE,https://github.com/theislab/idtrack,0,63e94a5073ee98195415a955e15a998f55591826,"Merge pull request #39 from theislab/release - -Release",[![](https://github.com/theislab/idtrack/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/idtrack/actions/runs/4836150850) +Signed-off-by: dependabot[bot] ",[![](https://github.com/theislab/idtrack/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5851023407) [![](https://github.com/theislab/idtrack/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/idtrack/actions/runs/5851023404) theislab,ifcseq,theislab/ifcseq,1,3,0,1,FALSE,https://github.com/theislab/ifcseq,1,NA,NA,NA theislab,interaction-tools,theislab/interaction-tools,1,4,0,0,FALSE,https://github.com/theislab/interaction-tools,1,NA,NA,NA theislab,interactive_plotting,theislab/interactive_plotting,19,4,10,7,FALSE,https://github.com/theislab/interactive_plotting,19,NA,NA,NA @@ -158,7 +157,7 @@ theislab,intercode,theislab/intercode,6,3,1,1,FALSE,https://github.com/theislab/ theislab,ipsc_ipd_analysis,theislab/ipsc_ipd_analysis,0,3,0,0,FALSE,https://github.com/theislab/ipsc_ipd_analysis,0,NA,NA,NA theislab,kBET,theislab/kBET,131,9,8,23,FALSE,https://github.com/theislab/kBET,131,NA,NA,NA theislab,kbranches,theislab/kbranches,5,7,0,0,FALSE,https://github.com/theislab/kbranches,5,NA,NA,NA -theislab,moscot,theislab/moscot,60,4,30,6,FALSE,https://github.com/theislab/moscot,60,4ffcf14551cfc2fcabd8b7835c49bdc3dcff9333,"Deps/update ott (#557) +theislab,moscot,theislab/moscot,61,4,30,6,FALSE,https://github.com/theislab/moscot,61,4ffcf14551cfc2fcabd8b7835c49bdc3dcff9333,"Deps/update ott (#557) * update notebooks @@ -176,7 +175,7 @@ theislab,moscot_benchmarks,theislab/moscot_benchmarks,1,2,1,0,FALSE,https://gith theislab,moscot_not,theislab/moscot_not,2,2,8,0,FALSE,https://github.com/theislab/moscot_not,2,NA,NA,NA theislab,moscot_notebooks,theislab/moscot_notebooks,5,1,2,2,FALSE,https://github.com/theislab/moscot_notebooks,5,f520dce5518b3a2051707365a1924391fc704d11,"fix link + typo (#55) -Co-authored-by: Arina Danilina ",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/5779574639) +Co-authored-by: Arina Danilina ",[![](https://github.com/theislab/moscot_notebooks/workflows/lint/badge.svg)](https://github.com/theislab/moscot_notebooks/actions/runs/5850350634) theislab,moslin,theislab/moslin,9,1,0,1,FALSE,https://github.com/theislab/moslin,9,NA,NA,NA theislab,mouse_cross-condition_pancreatic_islet_atlas,theislab/mouse_cross-condition_pancreatic_islet_atlas,2,2,0,1,FALSE,https://github.com/theislab/mouse_cross-condition_pancreatic_islet_atlas,2,NA,NA,NA theislab,mubind,theislab/mubind,16,2,30,0,FALSE,https://github.com/theislab/mubind,16,0e727d6867f3bf32f8c1a43f5053ec7e6a5a427a,"Merge pull request #69 from theislab/precommit @@ -212,16 +211,23 @@ theislab,organoid_dexamethason_stimulation,theislab/organoid_dexamethason_stimul theislab,paga,theislab/paga,163,10,21,29,FALSE,https://github.com/theislab/paga,163,NA,NA,NA theislab,pancreas-targeted_pharmacology,theislab/pancreas-targeted_pharmacology,0,7,0,2,FALSE,https://github.com/theislab/pancreas-targeted_pharmacology,0,NA,NA,NA theislab,pancreatic-endocrinogenesis,theislab/pancreatic-endocrinogenesis,3,3,0,5,FALSE,https://github.com/theislab/pancreatic-endocrinogenesis,3,NA,NA,NA -theislab,pertpy,theislab/pertpy,38,5,21,7,FALSE,https://github.com/theislab/pertpy,38,15d41f17a20056402fe58a27db5eeb73d887feff,Bump version from 0.5.0 to 0.6.0,[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5784170279) -theislab,pertpy,theislab/pertpy,38,5,21,7,FALSE,https://github.com/theislab/pertpy,38,2c96cd655aa7ee3f576fa238d14fc71255754c8f,cookietemple sync,[![](https://github.com/theislab/pertpy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/pertpy/actions/runs/1954811240) -theislab,pertpy,theislab/pertpy,38,5,21,7,FALSE,https://github.com/theislab/pertpy,38,35e5c6919c024b6e5915477ab6f4d0f0e7f99a84,"Remove whitespace in bulk RNA expression (#337) +theislab,pertpy,theislab/pertpy,38,5,24,7,FALSE,https://github.com/theislab/pertpy,38,14b31f7de59a96faa3ec27994af1b79738c252ec,"[DEPENDABOT]: Bump pypa/gh-action-pypi-publish from 1.8.8 to 1.8.10 -* remove whitespace in bulk RNA annotation - -* reformat - -* add details of random whitespace issue",[![](https://github.com/theislab/pertpy/workflows/Build%20pertpy%20Package/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5832543382) [![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5832543371) [![](https://github.com/theislab/pertpy/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5832543370) [![](https://github.com/theislab/pertpy/workflows/Run%20pertpy%20Tests/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5832543372) -theislab,pertpy,theislab/pertpy,38,5,21,7,FALSE,https://github.com/theislab/pertpy,38,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot"" +Bumps [pypa/gh-action-pypi-publish](https://github.com/pypa/gh-action-pypi-publish) from 1.8.8 to 1.8.10. +- [Release notes](https://github.com/pypa/gh-action-pypi-publish/releases) +- [Commits](https://github.com/pypa/gh-action-pypi-publish/compare/v1.8.8...v1.8.10) + +--- +updated-dependencies: +- dependency-name: pypa/gh-action-pypi-publish + dependency-type: direct:production + update-type: version-update:semver-patch +... + +Signed-off-by: dependabot[bot] ",[![](https://github.com/theislab/pertpy/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5851160070) +theislab,pertpy,theislab/pertpy,38,5,24,7,FALSE,https://github.com/theislab/pertpy,38,15d41f17a20056402fe58a27db5eeb73d887feff,Bump version from 0.5.0 to 0.6.0,[![](https://github.com/theislab/pertpy/workflows/Labeler/badge.svg)](https://github.com/theislab/pertpy/actions/runs/5784170279) +theislab,pertpy,theislab/pertpy,38,5,24,7,FALSE,https://github.com/theislab/pertpy,38,2c96cd655aa7ee3f576fa238d14fc71255754c8f,cookietemple sync,[![](https://github.com/theislab/pertpy/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/pertpy/actions/runs/1954811240) +theislab,pertpy,theislab/pertpy,38,5,24,7,FALSE,https://github.com/theislab/pertpy,38,404835c82f9a3d943b85973c10130303d090839d,"Revert ""Deleted JaxscgenPlot"" This reverts commit 161fc137c5a23320a5799a22cd4d7212b550bca9.",[![](https://github.com/theislab/pertpy/workflows/Run%20Notebooks/badge.svg)](https://github.com/theislab/pertpy/actions/runs/4629618853) theislab,pertpy-datasets,theislab/pertpy-datasets,1,4,0,1,FALSE,https://github.com/theislab/pertpy-datasets,1,NA,NA,NA @@ -252,26 +258,26 @@ Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.gi theislab,scarches,theislab/scarches,268,14,26,46,FALSE,https://github.com/theislab/scarches,268,NA,NA,NA theislab,scarches_notebooks,theislab/scarches_notebooks,0,3,0,0,FALSE,https://github.com/theislab/scarches_notebooks,0,NA,NA,NA theislab,scatac_poisson_reproducibility,theislab/scatac_poisson_reproducibility,5,3,0,0,FALSE,https://github.com/theislab/scatac_poisson_reproducibility,5,NA,NA,NA -theislab,scgen,theislab/scgen,208,10,15,47,FALSE,https://github.com/theislab/scgen,208,NA,NA,NA +theislab,scgen,theislab/scgen,208,10,16,47,FALSE,https://github.com/theislab/scgen,208,NA,NA,NA theislab,scgen-reproducibility,theislab/scgen-reproducibility,15,4,5,8,FALSE,https://github.com/theislab/scgen-reproducibility,15,NA,NA,NA theislab,scib,theislab/scib,226,17,26,44,FALSE,https://github.com/theislab/scib,NA,96556af27d94053a0e25f44383838e9e706683bc,move flake8 args to setup.cfg,[![](https://github.com/theislab/scib/workflows/Pre-commit/badge.svg)](https://github.com/theislab/scib/actions/runs/2276639868) theislab,scib,theislab/scib,226,17,26,44,FALSE,https://github.com/theislab/scib,NA,ed3e2846414ca1e3dc07552c0eef1e68d82230d4,Bump version: 1.1.3 → 1.1.4,[![](https://github.com/theislab/scib/workflows/Deployment/badge.svg)](https://github.com/theislab/scib/actions/runs/5655324075) -theislab,scib-pipeline,theislab/scib-pipeline,37,7,14,25,FALSE,https://github.com/theislab/scib-pipeline,37,1180bcb35829d6d2984202268b4d1d11c511e20c,Merge branch 'fix/igraph_dependency' into rpy2_unpin,[![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) -theislab,scib-reproducibility,theislab/scib-reproducibility,40,6,2,11,FALSE,https://github.com/theislab/scib-reproducibility,40,NA,NA,NA +theislab,scib-pipeline,theislab/scib-pipeline,38,7,14,25,FALSE,https://github.com/theislab/scib-pipeline,38,1180bcb35829d6d2984202268b4d1d11c511e20c,Merge branch 'fix/igraph_dependency' into rpy2_unpin,[![](https://github.com/theislab/scib-pipeline/workflows/Manual%20workflow/badge.svg)](https://github.com/theislab/scib-pipeline/actions/runs/4118363146) +theislab,scib-reproducibility,theislab/scib-reproducibility,41,6,2,11,FALSE,https://github.com/theislab/scib-reproducibility,41,NA,NA,NA theislab,scvelo,theislab/scvelo,347,15,61,96,FALSE,https://github.com/theislab/scvelo,347,d89ca6aecbe93256fbcdd8a521fdee2b9f2a673a,Add metabolic labeling inference (#1103),[![](https://github.com/theislab/scvelo/workflows/Check%20Build/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673828) [![](https://github.com/theislab/scvelo/workflows/CI/badge.svg)](https://github.com/theislab/scvelo/actions/runs/5658673829) theislab,scvelo_notebooks,theislab/scvelo_notebooks,23,2,2,12,FALSE,https://github.com/theislab/scvelo_notebooks,23,NA,NA,NA theislab,sfaira,theislab/sfaira,129,8,177,13,FALSE,https://github.com/theislab/sfaira,129,96fcf8f55c9865728c8032bec35e8d9e836e7001,Merge branch 'dev' into data/d10_1101_2022_03_10_483747,[![](https://github.com/theislab/sfaira/workflows/Build%20sfaira%20Package/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4859312807) theislab,sfaira,theislab/sfaira,129,8,177,13,FALSE,https://github.com/theislab/sfaira,129,c50240a74530e614ab7681bf9c63b04cb815b361,"Merge pull request #589 from theislab/release -Release 0.3.12",[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/5844137106) +Release 0.3.12",[![](https://github.com/theislab/sfaira/workflows/Check%20URLs/badge.svg)](https://github.com/theislab/sfaira/actions/runs/5850283582) theislab,sfaira,theislab/sfaira,129,8,177,13,FALSE,https://github.com/theislab/sfaira,129,d1a9e6c4c7974abe685263206671a452f8e84c6f,fix miura organ annotation,[![](https://github.com/theislab/sfaira/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/sfaira/actions/runs/4734866287) theislab,sfaira-portal,theislab/sfaira-portal,0,4,2,0,FALSE,https://github.com/theislab/sfaira-portal,0,a06e268a61598ca1b7244d52f2e6246f48d6541d,fix typo,[![](https://github.com/theislab/sfaira-portal/workflows/Build-site/badge.svg)](https://github.com/theislab/sfaira-portal/actions/runs/1739478412) theislab,sfaira-site,theislab/sfaira-site,0,4,0,0,FALSE,https://github.com/theislab/sfaira-site,0,NA,NA,NA theislab,sfaira_benchmarks,theislab/sfaira_benchmarks,0,3,0,0,FALSE,https://github.com/theislab/sfaira_benchmarks,0,NA,NA,NA theislab,sfaira_extension,theislab/sfaira_extension,0,3,1,0,FALSE,https://github.com/theislab/sfaira_extension,0,NA,NA,NA theislab,sfaira_tutorials,theislab/sfaira_tutorials,5,4,3,2,FALSE,https://github.com/theislab/sfaira_tutorials,5,NA,NA,NA -theislab,single-cell-best-practices,theislab/single-cell-best-practices,450,16,43,78,FALSE,https://github.com/theislab/single-cell-best-practices,450,84bc8a19c73b8c5274aea1c3bc396f9cd211e214,Add disclaimer about scirpy data structure update (#228),[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599630) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599625) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599624) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599627) -theislab,single-cell-best-practices,theislab/single-cell-best-practices,450,16,43,78,FALSE,https://github.com/theislab/single-cell-best-practices,450,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,452,16,42,78,FALSE,https://github.com/theislab/single-cell-best-practices,452,84bc8a19c73b8c5274aea1c3bc396f9cd211e214,Add disclaimer about scirpy data structure update (#228),[![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20book/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599630) [![](https://github.com/theislab/single-cell-best-practices/workflows/Build%20environments/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599625) [![](https://github.com/theislab/single-cell-best-practices/workflows/Labeler/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599624) [![](https://github.com/theislab/single-cell-best-practices/workflows/pre-commit/badge.svg)](https://github.com/theislab/single-cell-best-practices/actions/runs/5812599627) +theislab,single-cell-best-practices,theislab/single-cell-best-practices,452,16,42,78,FALSE,https://github.com/theislab/single-cell-best-practices,452,c06ca90930bd6c34220a7df594ed477aec1d6a19,"scATAC part (#162) * scATAC_pp @@ -389,7 +395,7 @@ theislab,single-cell-tutorial,theislab/single-cell-tutorial,1117,30,21,415,FALSE theislab,singlecell_proteomics,theislab/singlecell_proteomics,3,4,4,3,FALSE,https://github.com/theislab/singlecell_proteomics,3,NA,NA,NA theislab,spapros,theislab/spapros,18,3,23,5,FALSE,https://github.com/theislab/spapros,18,28b974a43a8745d7cb0518b55fd68ce63b044ced,"Merge pull request #266 from theislab/development -New version release",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940143488) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466680) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466678) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/5844558733) +New version release",[![](https://github.com/theislab/spapros/workflows/Labeler/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940143488) [![](https://github.com/theislab/spapros/workflows/Build%20Documentation/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466680) [![](https://github.com/theislab/spapros/workflows/cookietemple%20lint/badge.svg)](https://github.com/theislab/spapros/actions/runs/5425466678) [![](https://github.com/theislab/spapros/workflows/cookietemple%20sync/badge.svg)](https://github.com/theislab/spapros/actions/runs/5850764118) theislab,spapros,theislab/spapros,18,3,23,5,FALSE,https://github.com/theislab/spapros,18,32aa90e29ff70afa4c001d47e80bcbd6e4d96d19,Bump version from 0.1.2 to 0.1.3,[![](https://github.com/theislab/spapros/workflows/Release%20Drafter/badge.svg)](https://github.com/theislab/spapros/actions/runs/4940112493) theislab,spapros-pipeline,theislab/spapros-pipeline,7,2,0,0,FALSE,https://github.com/theislab/spapros-pipeline,7,NA,NA,NA theislab,spapros-smk,theislab/spapros-smk,0,2,0,0,FALSE,https://github.com/theislab/spapros-smk,0,NA,NA,NA
theislab/single-cell-best-practices450452 164342 78 @@ -86,9 +86,9 @@

GitHub Dashboard

theislab/single-cell-best-practices450452 164342 78 c06ca9 theislab/cellrank 250 81819 30 1287de theislab/cellrank 250 81819 30 - + d88b4d
8 177 13 c50240
d1a9e6
theislab/zellkonverter9761620b56718
theislab/anndata2ri9697 7 14 14 9b6e9d
theislab/anndata2ri9697 7 14 14 ae804b
theislab/zellkonverter9761620b56718
theislab/ncem 91
theislab/moscot6061 4 30 6 theislab/pertpy 38 52124 715d41f14b31f
theislab/pertpy 38 52124 72c96cd15d41f
theislab/pertpy 38 52124 7 - - -35e5c62c96cd
theislab/pertpy 38 52124 7 <a href=“https://github.com/theislab/pertpy/commit/404835c82f9a3d943b85973c10130303d090839d” @@ -322,7 +319,7 @@

GitHub Dashboard

theislab/scib-pipeline3738 7 14 25 - 28b974
theislab/geome 10 313 2 5bf0cd 4 1 5 bd10c2
1 2 2 f520dc
1 12 0 -6eef34 +2c6bf5
theislab/bindome 2 0 04adc21a9bd81
theislab/idtrack 1 6 0 -2e23ba63e94a
theislab/idtrack 1 6 063e94a +9931b6
theislab/sfaira-portal theislab/scgen 208 101516 47
8
theislab/pseudodynamics4070theislab/scib-reproducibility41 6211
theislab/scib-reproducibilitytheislab/pseudodynamics 4070 6211
theislab/spatial_scog_workshop_2022