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zcat vs pigz vs gzip #68

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PedalheadPHX opened this issue Feb 12, 2024 · 0 comments
Open

zcat vs pigz vs gzip #68

PedalheadPHX opened this issue Feb 12, 2024 · 0 comments

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@PedalheadPHX
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zcat "temp/fastqs/{{ fastq.basename }}" |\

would a straight decompression be faster then zcat using gzip/gunzip or pigz? In most cases this is a short task but with large fastq it can take more time than I think we appreciate and ends up being a large part of the total start-stop run time

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