You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
The first filter is to get all the variants that are in COSMIC but would be filtered because that are in a public database (gnomAD, TOPMED). So there is not reason to have the DB_exclude
In the second filter we grab any variant that is not in the public databases, novel likely somatic events and rare inherited variants
Then these are merged to get the likely somatic candidates.
The text was updated successfully, but these errors were encountered:
phoenix/utilities/variant_filtering.jst
Line 44 in 9f04da2
This exclude line is not needed I believe:
The first filter is to get all the variants that are in COSMIC but would be filtered because that are in a public database (gnomAD, TOPMED). So there is not reason to have the DB_exclude
In the second filter we grab any variant that is not in the public databases, novel likely somatic events and rare inherited variants
Then these are merged to get the likely somatic candidates.
The text was updated successfully, but these errors were encountered: