New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

Question: CSI index on VCF #419

Open

PedalheadPHX opened this issue Apr 12, 2021 · 0 comments

Member

PedalheadPHX commented Apr 12, 2021

phoenix/modules/annotation/bcftools_annotate.jst

Line 165 in 281cb80

bcftools index --threads 4 --force "{{ temp_vcf }}"

In this code block we convert a BCF to VCF when needed, make a TBI index of the VCF and then also make a CSI index. Why do we make the CSI index?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment