From dab93af0366c13580bdec53b3b847eb1f2fbe319 Mon Sep 17 00:00:00 2001 From: ceceliapowers Date: Mon, 14 Oct 2024 21:54:07 -0400 Subject: [PATCH 01/13] Created file for packet sampling --- docs/physics/tardisgamma/packetsampling.rst | 13 +++++++++++++ 1 file changed, 13 insertions(+) create mode 100644 docs/physics/tardisgamma/packetsampling.rst diff --git a/docs/physics/tardisgamma/packetsampling.rst b/docs/physics/tardisgamma/packetsampling.rst new file mode 100644 index 00000000000..8f023fad00e --- /dev/null +++ b/docs/physics/tardisgamma/packetsampling.rst @@ -0,0 +1,13 @@ +Packet Sampling +=============== + + +In the simulation, we use spherical symmetry where the ejecta is divided into multiple spherical shells. To find the mass of each shell we multiply the mass fractions of each of the elements and isotopes with the density. We can set the timespace for the simulation +to be between t \ :sub:`start`\ and t \ :sub:`end`\ using either a linear or a logarithmic scale. + + +We use the radioactivedecay python package to calculate the number of decays in each channel for each shell and at every timestep for each isotope. +The composition is also updated after each timestep following Guttman et al. (2024). +Then to calculate the decay energy of each channel, we multiply the total number of decays with the energy of each channel. +We give weight to the decay energy of each channel of each isotope to sample the packets to take into account the spatial distribution +of radiocative isotopes present in different shells and the evolution of the composition over time. From 913c9c72ba7c9ab591ee5acd9340ce130d3ba9c5 Mon Sep 17 00:00:00 2001 From: ceceliapowers Date: Mon, 14 Oct 2024 21:57:41 -0400 Subject: [PATCH 02/13] Fixed some spacing. --- docs/physics/tardisgamma/packetsampling.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/physics/tardisgamma/packetsampling.rst b/docs/physics/tardisgamma/packetsampling.rst index 8f023fad00e..048337153ac 100644 --- a/docs/physics/tardisgamma/packetsampling.rst +++ b/docs/physics/tardisgamma/packetsampling.rst @@ -3,7 +3,7 @@ Packet Sampling In the simulation, we use spherical symmetry where the ejecta is divided into multiple spherical shells. To find the mass of each shell we multiply the mass fractions of each of the elements and isotopes with the density. We can set the timespace for the simulation -to be between t \ :sub:`start`\ and t \ :sub:`end`\ using either a linear or a logarithmic scale. +to be between t\ :sub:`start`\ and t\ :sub:`end`\ using either a linear or a logarithmic scale. We use the radioactivedecay python package to calculate the number of decays in each channel for each shell and at every timestep for each isotope. From 132c177cd7e5715a692586e0f3a0ea8708ac1e4d Mon Sep 17 00:00:00 2001 From: ceceliapowers Date: Mon, 14 Oct 2024 21:59:27 -0400 Subject: [PATCH 03/13] Added packet sampling file to the index --- docs/physics/tardisgamma/index.rst | 1 + 1 file changed, 1 insertion(+) diff --git a/docs/physics/tardisgamma/index.rst b/docs/physics/tardisgamma/index.rst index c9c091d2b5f..04c4c7cf621 100644 --- a/docs/physics/tardisgamma/index.rst +++ b/docs/physics/tardisgamma/index.rst @@ -5,3 +5,4 @@ TARDIS gamma :math:`\gamma` .. toctree:: packetinitialization + packetsampling From 37d3edb212c5a01c3901a3d7b4937e2b41578c7a Mon Sep 17 00:00:00 2001 From: ceceliapowers Date: Tue, 15 Oct 2024 08:57:25 -0400 Subject: [PATCH 04/13] Added Guttman et al 2024 to the bibliography --- docs/tardis.bib | 10 ++++++++++ 1 file changed, 10 insertions(+) diff --git a/docs/tardis.bib b/docs/tardis.bib index c324fb30456..a2c2a04089c 100644 --- a/docs/tardis.bib +++ b/docs/tardis.bib @@ -348,3 +348,13 @@ @ARTICLE{Boyle2017 adsurl = {https://ui.adsabs.harvard.edu/abs/2017A&A...599A..46B}, adsnote = {Provided by the SAO/NASA Astrophysics Data System} } + +@misc{Guttman2024, + author={Or Guttman and Ben Shenhar and Arnab Sarkar and Eli Waxman}, + title={The thermalization of $\gamma$-rays in radioactive expanding ejecta: A simple model and its application for Kilonovae and Ia SNe}, + year={2024}, + eprint={2403.08769}, + archivePrefix={arXiv}, + primaryClass={astro-ph.HE}, + url={https://arxiv.org/abs/2403.08769}, +} \ No newline at end of file From 3891667f4efda76706f39f5df25a240c729c69cf Mon Sep 17 00:00:00 2001 From: ceceliapowers Date: Tue, 15 Oct 2024 08:59:10 -0400 Subject: [PATCH 05/13] Added citation --- docs/physics/tardisgamma/packetsampling.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/physics/tardisgamma/packetsampling.rst b/docs/physics/tardisgamma/packetsampling.rst index 048337153ac..b7f9423d7c0 100644 --- a/docs/physics/tardisgamma/packetsampling.rst +++ b/docs/physics/tardisgamma/packetsampling.rst @@ -7,7 +7,7 @@ to be between t\ :sub:`start`\ and t\ :sub:`end`\ using either a linear or a l We use the radioactivedecay python package to calculate the number of decays in each channel for each shell and at every timestep for each isotope. -The composition is also updated after each timestep following Guttman et al. (2024). +The composition is also updated after each timestep following :cite:`Guttman2024`. Then to calculate the decay energy of each channel, we multiply the total number of decays with the energy of each channel. We give weight to the decay energy of each channel of each isotope to sample the packets to take into account the spatial distribution of radiocative isotopes present in different shells and the evolution of the composition over time. From 9e08aca024e16bb6ae0e727415855a045d8987c7 Mon Sep 17 00:00:00 2001 From: ceceliapowers Date: Tue, 15 Oct 2024 09:00:46 -0400 Subject: [PATCH 06/13] Fixed typos --- docs/physics/tardisgamma/packetsampling.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/physics/tardisgamma/packetsampling.rst b/docs/physics/tardisgamma/packetsampling.rst index b7f9423d7c0..78a0698b244 100644 --- a/docs/physics/tardisgamma/packetsampling.rst +++ b/docs/physics/tardisgamma/packetsampling.rst @@ -9,5 +9,5 @@ to be between t\ :sub:`start`\ and t\ :sub:`end`\ using either a linear or a l We use the radioactivedecay python package to calculate the number of decays in each channel for each shell and at every timestep for each isotope. The composition is also updated after each timestep following :cite:`Guttman2024`. Then to calculate the decay energy of each channel, we multiply the total number of decays with the energy of each channel. -We give weight to the decay energy of each channel of each isotope to sample the packets to take into account the spatial distribution +We give weight to the decay energy of each channel of each isotope to sample the packets which takes into account the spatial distribution of radiocative isotopes present in different shells and the evolution of the composition over time. From 670646da1e044c981f96fbc302eebc4ea3d2e513 Mon Sep 17 00:00:00 2001 From: ceceliapowers Date: Tue, 15 Oct 2024 09:37:42 -0400 Subject: [PATCH 07/13] Changed citation type to article. --- docs/tardis.bib | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/tardis.bib b/docs/tardis.bib index a2c2a04089c..52ac00cf135 100644 --- a/docs/tardis.bib +++ b/docs/tardis.bib @@ -349,7 +349,7 @@ @ARTICLE{Boyle2017 adsnote = {Provided by the SAO/NASA Astrophysics Data System} } -@misc{Guttman2024, +@Article{Guttman2024, author={Or Guttman and Ben Shenhar and Arnab Sarkar and Eli Waxman}, title={The thermalization of $\gamma$-rays in radioactive expanding ejecta: A simple model and its application for Kilonovae and Ia SNe}, year={2024}, From a7dc2f8a7c22574c08f899eecd08f4df194de8a6 Mon Sep 17 00:00:00 2001 From: ceceliapowers Date: Tue, 15 Oct 2024 11:09:45 -0400 Subject: [PATCH 08/13] Changed citaion for Guttman et al 2024 --- docs/tardis.bib | 23 +++++++++++++++-------- 1 file changed, 15 insertions(+), 8 deletions(-) diff --git a/docs/tardis.bib b/docs/tardis.bib index 52ac00cf135..d21edadfc98 100644 --- a/docs/tardis.bib +++ b/docs/tardis.bib @@ -349,12 +349,19 @@ @ARTICLE{Boyle2017 adsnote = {Provided by the SAO/NASA Astrophysics Data System} } -@Article{Guttman2024, - author={Or Guttman and Ben Shenhar and Arnab Sarkar and Eli Waxman}, - title={The thermalization of $\gamma$-rays in radioactive expanding ejecta: A simple model and its application for Kilonovae and Ia SNe}, - year={2024}, - eprint={2403.08769}, - archivePrefix={arXiv}, - primaryClass={astro-ph.HE}, - url={https://arxiv.org/abs/2403.08769}, +@ARTICLE{2024arXiv240308769G, + author = {{Guttman}, Or and {Shenhar}, Ben and {Sarkar}, Arnab and {Waxman}, Eli}, + title = "{The thermalization of $\gamma$-rays in radioactive expanding ejecta: A simple model and its application for Kilonovae and Ia SNe}", + journal = {arXiv e-prints}, + keywords = {Astrophysics - High Energy Astrophysical Phenomena}, + year = 2024, + month = mar, + eid = {arXiv:2403.08769}, + pages = {arXiv:2403.08769}, + doi = {10.48550/arXiv.2403.08769}, +archivePrefix = {arXiv}, + eprint = {2403.08769}, + primaryClass = {astro-ph.HE}, + adsurl = {https://ui.adsabs.harvard.edu/abs/2024arXiv240308769G}, + adsnote = {Provided by the SAO/NASA Astrophysics Data System} } \ No newline at end of file From c02ffc1d4d75a7021aa303904e26e5f1401b5ac4 Mon Sep 17 00:00:00 2001 From: ceceliapowers Date: Tue, 15 Oct 2024 11:11:27 -0400 Subject: [PATCH 09/13] Fixed citation to match updated reference. --- docs/physics/tardisgamma/packetsampling.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/physics/tardisgamma/packetsampling.rst b/docs/physics/tardisgamma/packetsampling.rst index 78a0698b244..002d1c41bd7 100644 --- a/docs/physics/tardisgamma/packetsampling.rst +++ b/docs/physics/tardisgamma/packetsampling.rst @@ -7,7 +7,7 @@ to be between t\ :sub:`start`\ and t\ :sub:`end`\ using either a linear or a l We use the radioactivedecay python package to calculate the number of decays in each channel for each shell and at every timestep for each isotope. -The composition is also updated after each timestep following :cite:`Guttman2024`. +The composition is also updated after each timestep following :cite:`2024arXiv240308769G`. Then to calculate the decay energy of each channel, we multiply the total number of decays with the energy of each channel. We give weight to the decay energy of each channel of each isotope to sample the packets which takes into account the spatial distribution of radiocative isotopes present in different shells and the evolution of the composition over time. From 644cf55f3eacefc2ac9820c9e6a39cc2974990c7 Mon Sep 17 00:00:00 2001 From: ceceliapowers Date: Tue, 15 Oct 2024 11:14:34 -0400 Subject: [PATCH 10/13] Added link to radioactive decay python package --- docs/physics/tardisgamma/packetsampling.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/physics/tardisgamma/packetsampling.rst b/docs/physics/tardisgamma/packetsampling.rst index 002d1c41bd7..a46ccecf1f5 100644 --- a/docs/physics/tardisgamma/packetsampling.rst +++ b/docs/physics/tardisgamma/packetsampling.rst @@ -6,7 +6,7 @@ In the simulation, we use spherical symmetry where the ejecta is divided into mu to be between t\ :sub:`start`\ and t\ :sub:`end`\ using either a linear or a logarithmic scale. -We use the radioactivedecay python package to calculate the number of decays in each channel for each shell and at every timestep for each isotope. +We use the `radioactivedecay ` python package to calculate the number of decays in each channel for each shell and at every timestep for each isotope. The composition is also updated after each timestep following :cite:`2024arXiv240308769G`. Then to calculate the decay energy of each channel, we multiply the total number of decays with the energy of each channel. We give weight to the decay energy of each channel of each isotope to sample the packets which takes into account the spatial distribution From b6e41c7664e3b9dd4e7152ad96ffeea6cd83957d Mon Sep 17 00:00:00 2001 From: ceceliapowers Date: Tue, 29 Oct 2024 10:40:23 -0400 Subject: [PATCH 11/13] Added link to the documentation page about the model shell structure. --- docs/physics/tardisgamma/packetsampling.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/physics/tardisgamma/packetsampling.rst b/docs/physics/tardisgamma/packetsampling.rst index a46ccecf1f5..d6ebbe7d956 100644 --- a/docs/physics/tardisgamma/packetsampling.rst +++ b/docs/physics/tardisgamma/packetsampling.rst @@ -2,7 +2,7 @@ Packet Sampling =============== -In the simulation, we use spherical symmetry where the ejecta is divided into multiple spherical shells. To find the mass of each shell we multiply the mass fractions of each of the elements and isotopes with the density. We can set the timespace for the simulation +In the simulation, we use spherical symmetry where the ejecta is divided into multiple spherical shells(see :doc:`../setup/model`). To find the mass of each shell we multiply the mass fractions of each of the elements and isotopes with the density. We can set the timespace for the simulation to be between t\ :sub:`start`\ and t\ :sub:`end`\ using either a linear or a logarithmic scale. From 46f7710cd9a4f7a6cbc3e28288a698c24c80b9b4 Mon Sep 17 00:00:00 2001 From: ceceliapowers Date: Fri, 1 Nov 2024 13:13:03 -0400 Subject: [PATCH 12/13] Changed name of Guttman et al 2024 in bib file --- docs/tardis.bib | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/tardis.bib b/docs/tardis.bib index d21edadfc98..778f7fba752 100644 --- a/docs/tardis.bib +++ b/docs/tardis.bib @@ -349,7 +349,7 @@ @ARTICLE{Boyle2017 adsnote = {Provided by the SAO/NASA Astrophysics Data System} } -@ARTICLE{2024arXiv240308769G, +@ARTICLE{Guttman2024, author = {{Guttman}, Or and {Shenhar}, Ben and {Sarkar}, Arnab and {Waxman}, Eli}, title = "{The thermalization of $\gamma$-rays in radioactive expanding ejecta: A simple model and its application for Kilonovae and Ia SNe}", journal = {arXiv e-prints}, From 6c73d4d3d6b114ceb78274b66c18a79e011fa0b9 Mon Sep 17 00:00:00 2001 From: ceceliapowers Date: Fri, 1 Nov 2024 13:15:25 -0400 Subject: [PATCH 13/13] Changed citation to match .bib file --- docs/physics/tardisgamma/packetsampling.rst | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/docs/physics/tardisgamma/packetsampling.rst b/docs/physics/tardisgamma/packetsampling.rst index d6ebbe7d956..323cea2bc11 100644 --- a/docs/physics/tardisgamma/packetsampling.rst +++ b/docs/physics/tardisgamma/packetsampling.rst @@ -7,7 +7,7 @@ to be between t\ :sub:`start`\ and t\ :sub:`end`\ using either a linear or a l We use the `radioactivedecay ` python package to calculate the number of decays in each channel for each shell and at every timestep for each isotope. -The composition is also updated after each timestep following :cite:`2024arXiv240308769G`. +The composition is also updated after each timestep following :cite:`Guttman2024`. Then to calculate the decay energy of each channel, we multiply the total number of decays with the energy of each channel. We give weight to the decay energy of each channel of each isotope to sample the packets which takes into account the spatial distribution of radiocative isotopes present in different shells and the evolution of the composition over time.