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install scdb, download test #82

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Jungkooklove0901 opened this issue Dec 13, 2022 · 0 comments

Jungkooklove0901 commented Dec 13, 2022

When scdb_init("testdb/", force_reinit=T) is executed, only the phrase "initializing scdb to testdb/" appears and scdb is not installed.
And after running options(timeout = 1e9),
When I run mcell_import_scmat_10x("test", base_dir="http://www.wisdom.weizmann.ac.il/~atanay/metac_data/pbmc_8k/"), I get a
Error in scmat_read_scmat_10x(matrix_fn, genes_fn, cells_fn, dataset_id = mat_nm) :
MC-ERR: missing 10x matrix urls, links: http://www.wisdom.weizmann.ac.il/~atanay/metac_data/pbmc_8k//matrix.mtx http://www.wisdom.weizmann.ac.il/~atanay/metac_data/pbmc_8k//genes.tsv http://www.wisdom.weizmann.ac.il/~atanay/metac_data/pbmc_8k//barcodes.tsv.

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