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I am trying to create a heatmap of certain cell markers for a subpopulation of metacells (myeloid cells, for example).
However, the colorbar in the bottom showing the current annotation of the metacells seems to be completely out of order.
This problem remains regardless of which subsets of cells I choose.
An example of the code I run:
mcell_mc_plot_marks(mc_id="singlets_mc_f",
gset_id="singlets_markers",
mat_id="singlets",
fig_fn="myeloid_markers.png",
focus_mcs=85:126,
gene_list = myeloid_marker_genes)
Here is a screen clipping or the colorbar of the relevant cells when I don't specify focus_mcs:
And here's how the colorbar looks when I do select focus_mcs:
I would greatly appreciate your help I looked over the source code and couldn't find the source of the problem,
Ori
The text was updated successfully, but these errors were encountered:
Hi,
I am trying to create a heatmap of certain cell markers for a subpopulation of metacells (myeloid cells, for example).
However, the colorbar in the bottom showing the current annotation of the metacells seems to be completely out of order.
This problem remains regardless of which subsets of cells I choose.
An example of the code I run:
mcell_mc_plot_marks(mc_id="singlets_mc_f",
gset_id="singlets_markers",
mat_id="singlets",
fig_fn="myeloid_markers.png",
focus_mcs=85:126,
gene_list = myeloid_marker_genes)
Here is a screen clipping or the colorbar of the relevant cells when I don't specify focus_mcs:
And here's how the colorbar looks when I do select focus_mcs:
I would greatly appreciate your help I looked over the source code and couldn't find the source of the problem,
Ori
The text was updated successfully, but these errors were encountered: