You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Most of the time, the above Scissor command runs successfully. Occasionally, it does not and I receive the following error:
[1] "||"
[1] "Performing quality-check for the correlations"
[1] "The five-number summary of correlations:"
0% 25% 50% 75% 100%
0.01839713 0.26478574 0.32455696 0.37402355 0.52673473
[1] "||"
Error in Scissor(bulk_dataset = bulk_counts, sc_dataset = seur_dataset, :
The length differs between tags and phenotypes. Please check Scissor inputs and selected regression type.
Hello, I'm testing Scissor with several continuous dependent variables.
info <- Scissor(bulk_dataset = bulk_counts,
sc_dataset = seur_dataset,
phenotype = phenotype,
alpha = NULL,
cutoff = 0.2,
tag = phenotype,
family = "gaussian",
Save_file = 'info.RData') `
My phenotypes are named numeric vectors as follows, a (successful) example:
A_07_L01_01 A_07_L01_03 A_07_L01_04 B_01_L01_04 B_01_L01_05 B_02_L01_08 B_02_L01_09 B_02_L01_10 C_06_L01_01
13.00 12.00 17.20 12.40 6.57 12.80 8.02 23.50 13.10
C_06_L01_02 C_07_L01_04 C_07_L01_06 B_01_L01_01 B_01_L01_02 B_01_L01_03 B_02_L01_06 B_02_L01_07 C_06_L01_03
13.60 8.29 6.29 14.40 16.00 19.30 8.82 11.20 15.90
A_03_L01_01 A_03_L01_02 A_03_L01_03 A_03_L01_04 A_08_L01_05 A_08_L01_06 A_08_L01_07
15.60 12.50 17.50 26.40 25.40 17.60 30.70
Most of the time, the above Scissor command runs successfully. Occasionally, it does not and I receive the following error:
[1] "||"
[1] "Performing quality-check for the correlations"
[1] "The five-number summary of correlations:"
0% 25% 50% 75% 100%
0.01839713 0.26478574 0.32455696 0.37402355 0.52673473
[1] "||"
Error in Scissor(bulk_dataset = bulk_counts, sc_dataset = seur_dataset, :
The length differs between tags and phenotypes. Please check Scissor inputs and selected regression type.
For context, the below phenotype led to an error:
A_07_L01_01 A_07_L01_03 A_07_L01_04 B_01_L01_04 B_01_L01_05 B_02_L01_08 B_02_L01_09 B_02_L01_10 C_06_L01_01
10.20 11.40 10.10 7.02 3.42 6.34 8.67 13.30 4.98
C_06_L01_02 C_07_L01_04 C_07_L01_06 B_01_L01_01 B_01_L01_02 B_01_L01_03 B_02_L01_06 B_02_L01_07 C_06_L01_03
6.05 4.61 5.52 8.41 15.60 13.30 6.44 8.73 7.41
A_03_L01_01 A_03_L01_02 A_03_L01_03 A_03_L01_04 A_08_L01_05 A_08_L01_06 A_08_L01_07
9.02 8.87 14.10 9.90 9.79 10.30 11.90
Thanks for your advice.
The text was updated successfully, but these errors were encountered: