build-coot-ubuntu.yml

name: Coot CI Ubuntu

on:
  push:
  workflow_dispatch:

jobs:
  build-ubuntu:

    runs-on: ubuntu-latest

    steps:
    - uses: actions/checkout@v4

    - name: wget test data
      run:  wget -nv https://www2.mrc-lmb.cam.ac.uk/personal/pemsley/coot/data/greg-data.tar.gz

    - name: Untar test data
      run: cd src && tar xf ../greg-data.tar.gz && cd -

    - name: cache test data
      id: cache-coot-test-data
      uses: actions/cache@v4
      with:
         path: src/greg-data
         key:  coot-test-data

    - name: Cache coot dependencies
      id: cache-coot-dependencies
      uses: actions/cache@v4
      with:
         path: /home/runner/install/coot-Linux-ubuntu-gtk4
         key:  coot-deps-ubuntu

    - name: Cache gemmi source
      id:   Cache-gemmi-source
      uses: actions/cache@v4
      with:
         path: gemmi
         key:  coot-build-ubuntu-gemmi-cache-source

    - name: Cache gemmi build
      id:   Cache-gemmi-build
      uses: actions/cache@v4
      with:
         path: build-gemmi
         key:  coot-build-ubuntu-gemmi-cache-build

    - name: List any installed Coot libs
      run:  ls -l /home/runner/install/coot-Linux-ubuntu-gtk4/lib/libcoot* /home/runner/install/coot-Linux-ubuntu-gtk4/lib/libMoleculesToTrianglesCXXClasses*

    - name: Delete any installed Coot libs
      run:  rm /home/runner/install/coot-Linux-ubuntu-gtk4/lib/libcoot* /home/runner/install/coot-Linux-ubuntu-gtk4/lib/libMoleculesToTrianglesCXXClasses*

    - name: download the monomer library
      run:  wget -nv https://github.com/MonomerLibrary/monomers/archive/refs/tags/ccp4-8.0.016.tar.gz

    # note that the data directory exists in the coot repo (which is where we are)
    - name: untar the monomer library
      run:  pwd && cd data && tar xf ../ccp4-8.0.016.tar.gz && ln -s monomers-ccp4-8.0.016 monomers

    - name: Update apt-get
      run:  sudo apt-get update

    - name: Install system dependencies
      run: sudo apt-get install cmake libdw-dev libncurses5-dev libgtk-4-dev libvorbis-dev libasound2-dev

    - name: Where are we?
      run:  pwd

    - name: Run build-with-build-it-3-3
      run:  bash build-it-3-3 || echo done

    - name: Run autogen.sh
      run:  bash autogen.sh

    - name: Set the PATH
      # the install dir is set specifically in build-it-3-3 when we in github actions
      run:  echo /home/runner/install/coot-Linux-ubuntu-gtk4/bin >> $GITHUB_PATH

    - name: Run configure
      # we echo done so that this returns a success status so that the logs are always uploaded
      run: >
        ./configure --prefix=/home/runner/install/coot-Linux-ubuntu-gtk4
        --enable-silent-rules
        --with-enhanced-ligand-tools
        --with-fftw-prefix=/home/runner/install/coot-Linux-ubuntu-gtk4
        --with-boost=/home/runner/install/coot-Linux-ubuntu-gtk4
        --with-gemmi=/home/runner/install/coot-Linux-ubuntu-gtk4
        --with-boost-libdir=/home/runner/install/coot-Linux-ubuntu-gtk4/lib
        --with-backward --with-libdw --with-sound --disable-static
        SHELL=/bin/bash
        PYTHON=/home/runner/install/coot-Linux-ubuntu-gtk4/bin/python3
        PKG_CONFIG_PATH=/home/runner/install/coot-Linux-ubuntu-gtk4/lib64/pkgconfig:/home/runner/install/coot-Linux-ubuntu-gtk4/lib/pkgconfig:/home/runner/install/coot-Linux-ubuntu-gtk4/lib/x86_64-linux-gnu/pkgconfig
        || echo done

    - name: Compile with make
      run:  make -j 4 || echo done

    - name: Install with make install
      run:  make install || echo done

    - name: Upload config.log
      uses: actions/upload-artifact@v4
      with:
        name: upload-config-log-package
        path: ./config.log
        retention-days: 3

    - name: Upload build logs
      uses: actions/upload-artifact@v4
      with:
        name: build-logs-public-html-package
        path: /home/runner/public_html
        retention-days: 3

    - name: Does it run?
      env:
        COOT_REFMAC_LIB_DIR: /home/runner/work/coot/coot # "data/monomers" is added before "a/ATP.cif" (say)
      run:  cd src && ./Coot --no-graphics < /dev/null && cd -

    - name: Run the Unit Python Tests
      env:
        COOT_REFMAC_LIB_DIR: /home/runner/work/coot/coot
        COOT_TEST_DATA_DIR:  ../src/greg-data
      run:  cd python-tests && ../src/Coot --no-graphics --script run_the_unit_tests.py && cd -

    - name: Upload binaries
      uses: actions/upload-artifact@v4
      with:
        name: ubuntu-binaries-package
        path: /home/runner/install
        retention-days: 3