From 0fbf50147dd18fc4d9cb81531884d66aa9c28954 Mon Sep 17 00:00:00 2001 From: Jorgen-5 Date: Wed, 6 Nov 2024 13:38:36 +0100 Subject: [PATCH] Shortnames can have non ascii characters (#432) * Updated dapla toolbet metadata package * Added fix to error * Update .vscode/settings.json * Update .vscode/settings.json * Removed unessasary code * Fixed end of file * Fixed end of file * Small change to test --------- Co-authored-by: Jorgen-5 --- poetry.lock | 2741 +++++++++-------- src/datadoc/constants.py | 5 + src/datadoc/frontend/callbacks/utils.py | 28 + src/datadoc/frontend/callbacks/variables.py | 5 +- src/datadoc/frontend/fields/display_base.py | 14 + tests/conftest.py | 19 + .../callbacks/test_callbacks_utils.py | 32 +- .../callbacks/test_variables_callbacks.py | 21 + ...estdata_p2021-12-31_p2021-12-31_v1.parquet | Bin 0 -> 5131 bytes ...tdata_p2021-12-31_p2021-12-31_v1__DOC.json | 396 +++ tests/utils.py | 8 + 11 files changed, 1967 insertions(+), 1302 deletions(-) create mode 100644 tests/resources/illegal_shortnames/person_testdata_p2021-12-31_p2021-12-31_v1.parquet create mode 100644 tests/resources/illegal_shortnames/person_testdata_p2021-12-31_p2021-12-31_v1__DOC.json diff --git a/poetry.lock b/poetry.lock index 46d4083a..591156e0 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.8.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.7.1 and should not be changed by hand. 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verdi:" CHECK_OBLIGATORY_METADATA_VARIABLES_MESSAGE = "Følgende variabler har felt uten verdi:" DAPLA_MANUAL_TEXT = "Dapla manual navnestandard" + +ILLEGAL_SHORTNAME_WARNING = ( + "Noen av variablene i datasetter følger ikke navnestandard for kortnavn" +) +ILLEGAL_SHORTNAME_WARNING_MESSAGE = "Følgende navnestandard er utarbeidet for variabler: Alfanumerisk begrenset til a-z, A-Z, 0-9, - (bindestrek) og (understrek). Kortnavn som ikke følger standarden:" diff --git a/src/datadoc/frontend/callbacks/utils.py b/src/datadoc/frontend/callbacks/utils.py index d91617c8..25368d9d 100644 --- a/src/datadoc/frontend/callbacks/utils.py +++ b/src/datadoc/frontend/callbacks/utils.py @@ -22,6 +22,8 @@ from datadoc import state from datadoc.constants import CHECK_OBLIGATORY_METADATA_DATASET_MESSAGE from datadoc.constants import CHECK_OBLIGATORY_METADATA_VARIABLES_MESSAGE +from datadoc.constants import ILLEGAL_SHORTNAME_WARNING +from datadoc.constants import ILLEGAL_SHORTNAME_WARNING_MESSAGE from datadoc.constants import MISSING_METADATA_WARNING from datadoc.frontend.components.builders import AlertTypes from datadoc.frontend.components.builders import build_ssb_alert @@ -364,6 +366,31 @@ def variables_control(error_message: str | None, variables: list) -> dbc.Alert | ) +def check_variable_names( + variables: list, +) -> dbc.Alert | None: + """Checks if a variable shortname complies with the naming standard. + + Returns: + An ssb alert with a message saying that what names dont comply with the naming standard. + """ + illegal_names: list = [ + v.short_name + for v in variables + if not re.match(r"^[a-z0-9_]{3,}$", v.short_name) + ] + + if not illegal_names: + return None + return build_ssb_alert( + AlertTypes.WARNING, + ILLEGAL_SHORTNAME_WARNING, + ILLEGAL_SHORTNAME_WARNING_MESSAGE, + None, + illegal_names, + ) + + def save_metadata_and_generate_alerts(metadata: Datadoc) -> list: """Save the metadata document to disk and check obligatory metadata. @@ -397,4 +424,5 @@ def save_metadata_and_generate_alerts(metadata: Datadoc) -> list: success_alert, dataset_control(missing_obligatory_dataset), variables_control(missing_obligatory_variables, metadata.variables), + check_variable_names(metadata.variables), ] diff --git a/src/datadoc/frontend/callbacks/variables.py b/src/datadoc/frontend/callbacks/variables.py index bd0c0645..29b8ec61 100644 --- a/src/datadoc/frontend/callbacks/variables.py +++ b/src/datadoc/frontend/callbacks/variables.py @@ -3,6 +3,7 @@ from __future__ import annotations import logging +import urllib.parse from typing import TYPE_CHECKING from datadoc import state @@ -84,7 +85,7 @@ def handle_multi_language_metadata( if isinstance(new_value, str): return find_existing_language_string( - state.metadata.variables_lookup[updated_row_id], + state.metadata.variables_lookup[urllib.parse.unquote(updated_row_id)], new_value, metadata_field, language, @@ -128,7 +129,7 @@ def accept_variable_metadata_input( # Write the value to the variables structure setattr( - state.metadata.variables_lookup[variable_short_name], + state.metadata.variables_lookup[urllib.parse.unquote(variable_short_name)], metadata_field, new_value, ) diff --git a/src/datadoc/frontend/fields/display_base.py b/src/datadoc/frontend/fields/display_base.py index a2538a26..2ae416a1 100644 --- a/src/datadoc/frontend/fields/display_base.py +++ b/src/datadoc/frontend/fields/display_base.py @@ -3,6 +3,7 @@ from __future__ import annotations import logging +import urllib from abc import ABC from abc import abstractmethod from dataclasses import dataclass @@ -141,6 +142,13 @@ class DisplayMetadata(ABC): obligatory: bool = False editable: bool = True + def url_encode_shortname_ids(self, component_id: dict) -> None: + """Encodes id to hanlde non ascii values.""" + if "variable_short_name" in component_id: + component_id["variable_short_name"] = urllib.parse.quote( + component_id["variable_short_name"], + ) + @abstractmethod def render( self, @@ -164,6 +172,7 @@ def render( metadata: BaseModel, ) -> ssb.Input: """Build an Input component.""" + self.url_encode_shortname_ids(component_id) return ssb.Input( label=self.display_name, id=component_id, @@ -189,6 +198,7 @@ def render( metadata: BaseModel, ) -> ssb.Dropdown: """Build Dropdown component.""" + self.url_encode_shortname_ids(component_id) return ssb.Dropdown( header=self.display_name, id=component_id, @@ -211,6 +221,7 @@ def render( metadata: BaseModel, ) -> ssb.Input: """Build Input date component.""" + self.url_encode_shortname_ids(component_id) return ssb.Input( label=self.display_name, id=component_id, @@ -240,6 +251,7 @@ def render( ) -> ssb.Input: """Build Input date component.""" component_id["type"] = self.id_type + self.url_encode_shortname_ids(component_id) return ssb.Input( label=self.display_name, id=component_id, @@ -269,6 +281,7 @@ def render_input_group( metadata: BaseModel, ) -> html.Section: """Build section with Input components for each language.""" + self.url_encode_shortname_ids(component_id) if "variable_short_name" in component_id: return html.Section( children=[ @@ -353,6 +366,7 @@ def render( metadata: BaseModel, ) -> ssb.Checkbox: """Build Checkbox component.""" + self.url_encode_shortname_ids(component_id) return ssb.Checkbox( label=self.display_name, id=component_id, diff --git a/tests/conftest.py b/tests/conftest.py index e076b0ba..d32b3be7 100644 --- a/tests/conftest.py +++ b/tests/conftest.py @@ -26,7 +26,9 @@ from .utils import TEST_EXISTING_METADATA_DIRECTORY from .utils import TEST_PARQUET_FILE_NAME +from .utils import TEST_PARQUET_FILE_NAME_ILLEGAL_SHORTNAMES from .utils import TEST_PARQUET_FILEPATH +from .utils import TEST_PARQUET_FILEPATH_ILLEGAL_SHORTNAMES from .utils import TEST_RESOURCES_DIRECTORY if TYPE_CHECKING: @@ -89,6 +91,23 @@ def metadata( ) +@pytest.fixture() +def metadata_illegal_shortnames( + _mock_timestamp: None, + _mock_user_info: None, + subject_mapping_fake_statistical_structure: StatisticSubjectMapping, + tmp_path: Path, +) -> Datadoc: + shutil.copy( + TEST_PARQUET_FILEPATH_ILLEGAL_SHORTNAMES, + tmp_path / TEST_PARQUET_FILE_NAME_ILLEGAL_SHORTNAMES, + ) + return Datadoc( + str(tmp_path / TEST_PARQUET_FILE_NAME_ILLEGAL_SHORTNAMES), + statistic_subject_mapping=subject_mapping_fake_statistical_structure, + ) + + @pytest.fixture() def existing_metadata_path() -> Path: return TEST_EXISTING_METADATA_DIRECTORY diff --git a/tests/frontend/callbacks/test_callbacks_utils.py b/tests/frontend/callbacks/test_callbacks_utils.py index 9694491a..1725ec39 100644 --- a/tests/frontend/callbacks/test_callbacks_utils.py +++ b/tests/frontend/callbacks/test_callbacks_utils.py @@ -1,3 +1,4 @@ +from dataclasses import dataclass from unittest import mock import dash_bootstrap_components as dbc @@ -76,16 +77,39 @@ def test_render_tabs(tab: str, identifier: str): def test_save_and_generate_alerts(): mock_metadata = mock.Mock() + + @dataclass + class Variable: + short_name: str + mock_metadata.variables = [ - "var1", - "var2", + Variable(short_name="var"), + Variable(short_name="var"), ] state.metadata = mock_metadata result = save_metadata_and_generate_alerts( mock_metadata, ) + assert (result[1] and result[2] and result[3]) is None + assert isinstance(result[0], dbc.Alert) + + +def test_save_and_generate_illegal_shortname_alert(): + mock_metadata = mock.Mock() + + @dataclass + class MockVariable: + short_name: str - num_list_of_alerts = 3 - assert len(result) == num_list_of_alerts + mock_metadata.variables = [ + MockVariable(short_name="var illegal"), + MockVariable(short_name="rådyr"), + ] + state.metadata = mock_metadata + result = save_metadata_and_generate_alerts( + mock_metadata, + ) assert (result[1] and result[2]) is None assert isinstance(result[0], dbc.Alert) + assert isinstance(result[3], dbc.Alert) + assert result[3].color == "warning" diff --git a/tests/frontend/callbacks/test_variables_callbacks.py b/tests/frontend/callbacks/test_variables_callbacks.py index 246fbee2..b7a9122c 100644 --- a/tests/frontend/callbacks/test_variables_callbacks.py +++ b/tests/frontend/callbacks/test_variables_callbacks.py @@ -634,3 +634,24 @@ def test_variables_metadata_control_dont_return_alert(metadata: Datadoc): missing_metadata = str(w[0].message) result = variables_control(missing_metadata, metadata.variables) assert result is None + + +def test_accept_variable_metadata_input_when_shortname_is_non_ascii( + metadata_illegal_shortnames: Datadoc, +): + state.metadata = metadata_illegal_shortnames + assert metadata_illegal_shortnames.variables[-1].short_name == "rådyr" + assert ( + accept_variable_metadata_input( + "Format value", + metadata_illegal_shortnames.variables[-1].short_name, + metadata_field=VariableIdentifiers.FORMAT.value, + language="nb", + ) + is None + ) + + assert ( + getattr(state.metadata.variables[-1], VariableIdentifiers.FORMAT.value) + == "Format value" + ) diff --git a/tests/resources/illegal_shortnames/person_testdata_p2021-12-31_p2021-12-31_v1.parquet b/tests/resources/illegal_shortnames/person_testdata_p2021-12-31_p2021-12-31_v1.parquet new file mode 100644 index 0000000000000000000000000000000000000000..58d602efd3496622473e08c4d9d465c148df9406 GIT binary patch literal 5131 zcmcgwO=uhW6`xTgdz>h?SUf@ovlx*TF2wPC>SH$x9m&>LY{gb=eN0<|Mw-|Y&5X7B 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b/tests/resources/illegal_shortnames/person_testdata_p2021-12-31_p2021-12-31_v1__DOC.json new file mode 100644 index 00000000..503fdd30 --- /dev/null +++ b/tests/resources/illegal_shortnames/person_testdata_p2021-12-31_p2021-12-31_v1__DOC.json @@ -0,0 +1,396 @@ +{ + "document_version": "0.0.1", + "datadoc": { + "percentage_complete": 93, + "document_version": "4.0.0", + "dataset": { + "short_name": "person_testdata_p2021-12-31_p2021-12-31", + "assessment": "PROTECTED", + "dataset_status": "INTERNAL", + "dataset_state": "PROCESSED_DATA", + "name": [ + { + "languageCode": "en", + "languageText": "" + }, + { + "languageCode": "nn", + "languageText": "" + }, + { + "languageCode": "nb", + "languageText": "Persondata demo datasett" + } + ], + "description": [ + { + "languageCode": "en", + "languageText": "" + }, + { + "languageCode": "nn", + "languageText": "" + }, + { + "languageCode": "nb", + "languageText": "Person-data til demo og testing av DataDoc" + } + ], + "data_source": null, + "population_description": [ + { + "languageCode": "en", + "languageText": "" + }, + { + "languageCode": "nn", + "languageText": "" + }, + { + "languageCode": "nb", + "languageText": "Alle bosatte i Norge" + } + ], + "version": "1", + "version_description": [ + { + "languageCode": "en", + "languageText": "" + }, + { + "languageCode": "nn", + "languageText": "" + }, + { + "languageCode": "nb", + "languageText": "Opprettelse" + } + ], + "unit_type": null, + "temporality_type": "STATUS", + "subject_field": null, + "keyword": [ + "befolkning", + "skatt" + ], + "spatial_coverage_description": [ + { + "languageCode": "en", + "languageText": "" + }, + { + "languageCode": "nn", + "languageText": "" + }, + { + "languageCode": "nb", + "languageText": "Norge" + } + ], + "contains_personal_data": false, + "use_restriction": null, + "use_restriction_date": null, + "custom_type": null, + "id": "2f72477a-f051-43ee-bf8b-0d8f47b5e0a7", + "owner": "722", + "file_path": "/Users/rlj/metadata/datadoc/tests/resources/illegal_shortnames/person_testdata_p2021-12-31_p2021-12-31_v1.parquet", + "metadata_created_date": "2022-10-07T07:35:01Z", + "metadata_created_by": "default_user@ssb.no", + "metadata_last_updated_date": "2024-11-06T09:46:49.268296Z", + "metadata_last_updated_by": null, + "contains_data_from": "2021-12-31", + "contains_data_until": "2021-12-31" + }, + "variables": [ + { + "short_name": "fnr", + "data_element_path": null, + "name": [ + { + "languageCode": "en", + "languageText": "Personal number" + }, + { + "languageCode": "nn", + "languageText": "aaa" + }, + { + "languageCode": "nb", + "languageText": "Fødselsnummer" + } + ], + "data_type": "STRING", + "variable_role": "IDENTIFIER", + "definition_uri": "https://www.ssb.no/a/metadata/conceptvariable/vardok/26/nb", + "is_personal_data": "NOT_PERSONAL_DATA", + "data_source": null, + "population_description": null, + "comment": [ + { + "languageCode": "nb", + "languageText": "aaaaaaaa" + } + ], + "temporality_type": "STATUS", + "measurement_unit": null, + "multiplication_factor": null, + "format": null, + "classification_uri": null, + "special_value": null, + "invalid_value_description": null, + "custom_type": null, + "id": "0d1a32ea-fd14-4156-8944-5fb0d47daaf5", + "contains_data_from": "2021-12-31", + "contains_data_until": "2021-12-31" + }, + { + "short_name": "sivilstand", + "data_element_path": null, + "name": [ + { + "languageCode": "en", + "languageText": "Marital status" + }, + { + "languageCode": "nn", + "languageText": "" + }, + { + "languageCode": "nb", + "languageText": "Sivilstand" + } + ], + "data_type": "STRING", + "variable_role": "MEASURE", + "definition_uri": "https://www.ssb.no/a/metadata/conceptvariable/vardok/91/nb", + "is_personal_data": "NOT_PERSONAL_DATA", + "data_source": null, + "population_description": null, + "comment": null, + "temporality_type": "STATUS", + "measurement_unit": null, + "multiplication_factor": null, + "format": null, + "classification_uri": null, + "special_value": null, + "invalid_value_description": null, + "custom_type": null, + "id": "0ad17986-148e-4b3c-9b59-9ced790f5517", + "contains_data_from": "2021-12-31", + "contains_data_until": "2021-12-31" + }, + { + "short_name": "bostedskommune", + "data_element_path": null, + "name": [ + { + "languageCode": "en", + "languageText": "Residential district" + }, + { + "languageCode": "nn", + "languageText": "" + }, + { + "languageCode": "nb", + "languageText": "Bostedskommune" + } + ], + "data_type": "STRING", + "variable_role": "MEASURE", + "definition_uri": "https://www.ssb.no/a/metadata/conceptvariable/vardok/94/nb", + "is_personal_data": "NOT_PERSONAL_DATA", + "data_source": null, + "population_description": null, + "comment": null, + "temporality_type": "STATUS", + "measurement_unit": null, + "multiplication_factor": null, + "format": null, + "classification_uri": null, + "special_value": null, + "invalid_value_description": null, + "custom_type": null, + "id": "338eb37c-6a74-4e62-9e10-16a8ecb8987c", + "contains_data_from": "2021-12-31", + "contains_data_until": "2021-12-31" + }, + { + "short_name": "inntekt", + "data_element_path": null, + "name": [ + { + "languageCode": "en", + "languageText": "Income" + }, + { + "languageCode": "nn", + "languageText": "" + }, + { + "languageCode": "nb", + "languageText": "Alminnelig inntekt" + } + ], + "data_type": "INTEGER", + "variable_role": "MEASURE", + "definition_uri": "https://www.ssb.no/a/metadata/conceptvariable/vardok/3495/nb", + "is_personal_data": "NOT_PERSONAL_DATA", + "data_source": null, + "population_description": null, + "comment": null, + "temporality_type": "STATUS", + "measurement_unit": null, + "multiplication_factor": null, + "format": null, + "classification_uri": null, + "special_value": null, + "invalid_value_description": null, + "custom_type": null, + "id": "99b3821a-5551-4638-a40d-a1bdbbc22c0e", + "contains_data_from": "2021-12-31", + "contains_data_until": "2021-12-31" + }, + { + "short_name": "bankinnskudd", + "data_element_path": null, + "name": [ + { + "languageCode": "en", + "languageText": "Bank transfer (total)" + }, + { + "languageCode": "nn", + "languageText": "Nynorsk navn" + }, + { + "languageCode": "nb", + "languageText": "aaaa" + } + ], + "data_type": "INTEGER", + "variable_role": "MEASURE", + "definition_uri": "https://www.ssb.no/a/metadata/conceptvariable/vardok/591/nb", + "is_personal_data": "NOT_PERSONAL_DATA", + "data_source": null, + "population_description": null, + "comment": [ + { + "languageCode": "nb", + "languageText": "AAA" + } + ], + "temporality_type": "STATUS", + "measurement_unit": null, + "multiplication_factor": null, + "format": null, + "classification_uri": null, + "special_value": null, + "invalid_value_description": null, + "custom_type": null, + "id": "681a6966-c6d6-4e5f-828c-1bac83123bc3", + "contains_data_from": "2021-12-31", + "contains_data_until": "2021-12-31" + }, + { + "short_name": "dato", + "data_element_path": null, + "name": [ + { + "languageCode": "en", + "languageText": "Date of registration" + }, + { + "languageCode": "nn", + "languageText": "" + }, + { + "languageCode": "nb", + "languageText": "Registrering sdato" + } + ], + "data_type": "DATETIME", + "variable_role": "START_TIME", + "definition_uri": null, + "is_personal_data": "NOT_PERSONAL_DATA", + "data_source": null, + "population_description": null, + "comment": [ + { + "languageCode": "en", + "languageText": "" + }, + { + "languageCode": "nn", + "languageText": "" + }, + { + "languageCode": "nb", + "languageText": "Måletidspunkt for data" + } + ], + "temporality_type": "STATUS", + "measurement_unit": null, + "multiplication_factor": null, + "format": "YYYY-MM-DD", + "classification_uri": null, + "special_value": null, + "invalid_value_description": null, + "custom_type": null, + "id": "d51ea75e-45ba-4f21-a2b7-7b9f50b77248", + "contains_data_from": "2021-12-31", + "contains_data_until": "2021-12-31" + }, + { + "short_name": "rådyr", + "data_element_path": null, + "name": [ + { + "languageCode": "en", + "languageText": "aaa" + }, + { + "languageCode": "nn", + "languageText": "a" + }, + { + "languageCode": "nb", + "languageText": "aaa" + } + ], + "data_type": "DATETIME", + "variable_role": "START_TIME", + "definition_uri": "https://github.com/pytest-dev/pytest/issues/3999", + "is_personal_data": "PSEUDONYMISED_ENCRYPTED_PERSONAL_DATA", + "data_source": null, + "population_description": null, + "comment": [ + { + "languageCode": "en", + "languageText": "" + }, + { + "languageCode": "nn", + "languageText": "" + }, + { + "languageCode": "nb", + "languageText": "" + } + ], + "temporality_type": "STATUS", + "measurement_unit": "01.02", + "multiplication_factor": 3, + "format": "2020-10-10", + "classification_uri": null, + "special_value": null, + "invalid_value_description": null, + "custom_type": null, + "id": "d51ea75e-45ba-4f21-a2b7-7b9f50b77248", + "contains_data_from": "2021-12-31", + "contains_data_until": "2021-12-31" + } + ] + }, + "pseudonymization": null +} diff --git a/tests/utils.py b/tests/utils.py index a18b96a8..6dce95a1 100644 --- a/tests/utils.py +++ b/tests/utils.py @@ -43,3 +43,11 @@ TEST_EXISTING_METADATA_NAMING_STANDARD_FILEPATH_NO_MISSING = ( TEST_EXISTING_METADATA_DIRECTORY / "test_p2021-12-31_p2021-12-31_v1__DOC.json" ) + +TEST_ILLEGAL_DATASETS_DIRECTORY = TEST_RESOURCES_DIRECTORY / "illegal_shortnames" +TEST_PARQUET_FILE_NAME_ILLEGAL_SHORTNAMES = ( + "person_testdata_p2021-12-31_p2021-12-31_v1.parquet" +) +TEST_PARQUET_FILEPATH_ILLEGAL_SHORTNAMES = ( + TEST_ILLEGAL_DATASETS_DIRECTORY / TEST_PARQUET_FILE_NAME_ILLEGAL_SHORTNAMES +)