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conda.panpop.yaml
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conda.panpop.yaml
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name: panpop
channels:
- bioconda
- conda-forge
- defaults
dependencies:
- _libgcc_mutex=0.1=conda_forge
- _openmp_mutex=4.5=2_gnu
- _r-mutex=1.0.1=anacondar_1
- aioeasywebdav=2.4.0=py39hf3d152e_1001
- aiohttp=3.7.4.post0=py39h3811e60_1
- alsa-lib=1.2.8=h166bdaf_0
- amply=0.1.5=pyhd8ed1ab_0
- appdirs=1.4.4=pyh9f0ad1d_0
- assemblytics=1.2.1=0
- async-timeout=3.0.1=py_1000
- attmap=0.13.2=pyhd8ed1ab_0
- attrs=22.2.0=pyh71513ae_0
- backports=1.0=pyhd8ed1ab_3
- backports.functools_lru_cache=1.6.4=pyhd8ed1ab_0
- bcftools=1.17=haef29d1_0
- bcrypt=3.2.2=py39hb9d737c_1
- bedtools=2.30.0=h468198e_3
- binutils_impl_linux-64=2.40=hf600244_0
- biopython=1.81=py39h72bdee0_0
- boltons=23.0.0=pyhd8ed1ab_0
- boto3=1.26.116=pyhd8ed1ab_0
- botocore=1.29.117=pyhd8ed1ab_0
- brotli=1.0.9=h166bdaf_8
- brotli-bin=1.0.9=h166bdaf_8
- brotlipy=0.7.0=py39hb9d737c_1005
- bwidget=1.9.14=ha770c72_1
- bzip2=1.0.8=h7f98852_4
- c-ares=1.18.1=h7f98852_0
- ca-certificates=2023.01.10=h06a4308_0
- cachetools=5.3.0=pyhd8ed1ab_0
- cairo=1.16.0=ha61ee94_1014
- certifi=2022.12.7=pyhd8ed1ab_0
- cffi=1.15.1=py39he91dace_3
- chardet=4.0.0=py39hf3d152e_3
- charset-normalizer=3.1.0=pyhd8ed1ab_0
- cigar=0.1.3=pyh864c0ab_1
- coin-or-cbc=2.10.10=h9002f0b_0
- coin-or-cgl=0.60.7=h516709c_0
- coin-or-clp=1.17.8=h1ee7a9c_0
- coin-or-osi=0.108.8=ha2443b9_0
- coin-or-utils=2.11.8=h4147370_0
- coincbc=2.10.10=0_metapackage
- colorama=0.4.6=pyhd8ed1ab_0
- conda=23.3.1=py39hf3d152e_0
- conda-package-handling=2.0.2=pyh38be061_0
- conda-package-streaming=0.7.0=pyhd8ed1ab_1
- configargparse=1.5.3=pyhd8ed1ab_0
- connection_pool=0.0.3=pyhd3deb0d_0
- contourpy=1.0.7=py39h4b4f3f3_0
- cryptography=39.0.0=py39hd598818_0
- curl=7.87.0=h6312ad2_0
- cutesv=2.0.2=pyhdfd78af_0
- cycler=0.11.0=pyhd8ed1ab_0
- datrie=0.8.2=py39hb9d737c_6
- defusedxml=0.7.1=pyhd8ed1ab_0
- docutils=0.19=py39hf3d152e_1
- dpath=2.1.5=py39hf3d152e_0
- dropbox=11.36.0=pyhd8ed1ab_0
- exceptiongroup=1.1.1=pyhd8ed1ab_0
- expat=2.5.0=hcb278e6_1
- famsa=2.2.2=h9f5acd7_0
- filechunkio=1.8=py_2
- filelock=3.12.0=pyhd8ed1ab_0
- fmt=9.1.0=h924138e_0
- font-ttf-dejavu-sans-mono=2.37=hab24e00_0
- font-ttf-inconsolata=3.000=h77eed37_0
- font-ttf-source-code-pro=2.038=h77eed37_0
- font-ttf-ubuntu=0.83=hab24e00_0
- fontconfig=2.14.2=h14ed4e7_0
- fonts-conda-ecosystem=1=0
- fonts-conda-forge=1=0
- fonttools=4.39.3=py39h72bdee0_0
- freetype=2.12.1=hca18f0e_1
- fribidi=1.0.10=h36c2ea0_0
- ftputil=5.0.4=pyhd8ed1ab_0
- gcc_impl_linux-64=12.2.0=hcc96c02_19
- gettext=0.21.1=h27087fc_0
- gfortran_impl_linux-64=12.2.0=h55be85b_19
- giflib=5.2.1=h0b41bf4_3
- gitdb=4.0.10=pyhd8ed1ab_0
- gitpython=3.1.31=pyhd8ed1ab_0
- google-api-core=2.11.0=pyhd8ed1ab_0
- google-api-python-client=2.86.0=pyhd8ed1ab_0
- google-auth=2.17.3=pyh1a96a4e_0
- google-auth-httplib2=0.1.0=pyhd8ed1ab_1
- google-cloud-core=2.3.2=pyhd8ed1ab_0
- google-cloud-storage=2.8.0=pyh1a96a4e_0
- google-crc32c=1.1.2=py39h8db88ab_4
- google-resumable-media=2.4.1=pyhd8ed1ab_0
- googleapis-common-protos=1.57.1=pyhd8ed1ab_0
- graphite2=1.3.13=h58526e2_1001
- grpcio=1.51.1=py39h712372c_0
- gsl=2.7=he838d99_0
- gxx_impl_linux-64=12.2.0=hcc96c02_19
- harfbuzz=6.0.0=h8e241bc_0
- htslib=1.17=h6bc39ce_0
- httplib2=0.22.0=pyhd8ed1ab_0
- humanfriendly=10.0=py39hf3d152e_4
- icu=70.1=h27087fc_0
- idna=3.4=pyhd8ed1ab_0
- importlib-metadata=6.5.0=pyha770c72_0
- importlib-resources=5.12.0=pyhd8ed1ab_0
- importlib_resources=5.12.0=pyhd8ed1ab_0
- iniconfig=2.0.0=pyhd8ed1ab_0
- jinja2=3.1.2=pyhd8ed1ab_1
- jmespath=1.0.1=pyhd8ed1ab_0
- jpeg=9e=h0b41bf4_3
- jsonpatch=1.32=pyhd8ed1ab_0
- jsonpointer=2.0=py_0
- jsonschema=4.17.3=pyhd8ed1ab_0
- jupyter_core=5.3.0=py39hf3d152e_0
- k8=0.2.5=hd03093a_2
- kernel-headers_linux-64=2.6.32=he073ed8_15
- keyutils=1.6.1=h166bdaf_0
- kiwisolver=1.4.4=py39hf939315_1
- krb5=1.20.1=hf9c8cef_0
- lcms2=2.14=h6ed2654_0
- ld_impl_linux-64=2.40=h41732ed_0
- lerc=4.0.0=h27087fc_0
- libabseil=20220623.0=cxx17_h05df665_6
- libarchive=3.6.2=hc8874e4_0
- libblas=3.9.0=16_linux64_openblas
- libbrotlicommon=1.0.9=h166bdaf_8
- libbrotlidec=1.0.9=h166bdaf_8
- libbrotlienc=1.0.9=h166bdaf_8
- libcblas=3.9.0=16_linux64_openblas
- libcrc32c=1.1.2=h9c3ff4c_0
- libcups=2.3.3=h36d4200_3
- libcurl=7.87.0=h6312ad2_0
- libdeflate=1.13=h166bdaf_0
- libedit=3.1.20191231=he28a2e2_2
- libev=4.33=h516909a_1
- libexpat=2.5.0=hcb278e6_1
- libffi=3.4.2=h7f98852_5
- libgcc-devel_linux-64=12.2.0=h3b97bd3_19
- libgcc-ng=12.2.0=h65d4601_19
- libgfortran-ng=12.2.0=h69a702a_19
- libgfortran5=12.2.0=h337968e_19
- libglib=2.76.1=ha491796_0
- libgomp=12.2.0=h65d4601_19
- libgrpc=1.51.1=h05bd8bd_0
- libiconv=1.17=h166bdaf_0
- liblapack=3.9.0=16_linux64_openblas
- liblapacke=3.9.0=16_linux64_openblas
- libmamba=1.2.0=habaa8ee_0
- libmambapy=1.2.0=py39hf403a7a_0
- libnghttp2=1.51.0=hdcd2b5c_0
- libnsl=2.0.0=h7f98852_0
- libopenblas=0.3.21=pthreads_h78a6416_3
- libpng=1.6.39=h753d276_0
- libprotobuf=3.21.12=h3eb15da_0
- libsanitizer=12.2.0=h46fd767_19
- libsodium=1.0.18=h36c2ea0_1
- libsolv=0.7.23=h3eb15da_0
- libsqlite=3.40.0=h753d276_0
- libssh2=1.10.0=haa6b8db_3
- libstdcxx-devel_linux-64=12.2.0=h3b97bd3_19
- libstdcxx-ng=12.2.0=h46fd767_19
- libtiff=4.4.0=h0e0dad5_3
- libuuid=2.38.1=h0b41bf4_0
- libwebp-base=1.3.0=h0b41bf4_0
- libxcb=1.13=h7f98852_1004
- libxml2=2.10.3=hca2bb57_4
- libzlib=1.2.13=h166bdaf_4
- logmuse=0.2.6=pyh8c360ce_0
- lz4-c=1.9.4=hcb278e6_0
- lzo=2.10=h516909a_1000
- mafft=7.520=hec16e2b_0
- make=4.3=hd18ef5c_1
- mamba=1.2.0=py39hfa8f2c8_0
- markdown-it-py=2.2.0=pyhd8ed1ab_0
- markupsafe=2.1.2=py39h72bdee0_0
- matplotlib-base=3.7.1=py39he190548_0
- mdurl=0.1.0=pyhd8ed1ab_0
- minigraph=0.20=h7132678_0
- minimap2=2.24=h7132678_1
- multidict=6.0.4=py39h72bdee0_0
- mummer=3.23=pl5262h1b792b2_12
- munkres=1.0.7=py_1
- muscle=3.8.1551=h7d875b9_6
- nbformat=5.8.0=pyhd8ed1ab_0
- ncurses=6.3=h27087fc_1
- networkx=3.1=pyhd8ed1ab_0
- ngmlr=0.2.7=hd03093a_4
- numpy=1.24.2=py39h7360e5f_0
- oauth2client=4.1.3=py_0
- openjdk=17.0.3=h58dac75_5
- openjpeg=2.5.0=h7d73246_1
- openssl=1.1.1t=h0b41bf4_0
- packaging=23.1=pyhd8ed1ab_0
- pandas=2.0.0=py39h2ad29b5_0
- pango=1.50.14=hd33c08f_0
- paramiko=3.1.0=pyhd8ed1ab_0
- pbsv=2.9.0=h9ee0642_0
- pcre2=10.40=hc3806b6_0
- peppy=0.35.5=pyhd8ed1ab_0
- perl=5.26.2=h14c3975_0
- perl-app-cpanminus=1.7044=pl526_1
- perl-base=2.23=pl526_1
- perl-carp=1.38=pl526_3
- perl-constant=1.33=pl526_1
- perl-data-dumper=2.173=pl526_0
- perl-exporter=5.72=pl526_1
- perl-extutils-makemaker=7.36=pl526_1
- perl-file-path=2.16=pl526_0
- perl-file-spec=3.48_01=pl526_1
- perl-file-temp=0.2304=pl526_2
- perl-getopt-long=2.50=pl526_1
- perl-list-util=1.38=pl526_1
- perl-mce=1.837=pl526_0
- perl-mce-shared=1.840=pl526_0
- perl-parent=0.236=pl526_1
- perl-socket=2.027=pl526_1
- perl-storable=3.15=pl526h14c3975_0
- perl-time-hires=1.9760=pl526h14c3975_1
- perl-xsloader=0.24=pl526_0
- perl-yaml=1.29=pl526_0
- picard=3.0.0=hdfd78af_1
- pillow=9.2.0=py39hf3a2cdf_3
- pip=23.1=pyhd8ed1ab_0
- pixman=0.40.0=h36c2ea0_0
- pkgutil-resolve-name=1.3.10=pyhd8ed1ab_0
- plac=1.3.5=pyhd8ed1ab_0
- platformdirs=3.2.0=pyhd8ed1ab_0
- pluggy=1.0.0=pyhd8ed1ab_5
- ply=3.11=py_1
- pooch=1.7.0=pyha770c72_3
- prettytable=3.7.0=pyhd8ed1ab_0
- protobuf=4.21.12=py39h227be39_0
- psutil=5.9.5=py39h72bdee0_0
- pthread-stubs=0.4=h36c2ea0_1001
- pulp=2.7.0=py39hf3d152e_0
- pyasn1=0.4.8=py_0
- pyasn1-modules=0.2.7=py_0
- pybind11-abi=4=hd8ed1ab_3
- pycosat=0.6.4=py39hb9d737c_1
- pycparser=2.21=pyhd8ed1ab_0
- pygments=2.15.1=pyhd8ed1ab_0
- pynacl=1.5.0=py39hb9d737c_2
- pyopenssl=23.1.1=pyhd8ed1ab_0
- pyparsing=3.0.9=pyhd8ed1ab_0
- pyrsistent=0.19.3=py39h72bdee0_0
- pysam=0.21.0=py39h9abd093_0
- pysftp=0.2.9=py_1
- pysocks=1.7.1=pyha2e5f31_6
- pytest=7.3.1=pyhd8ed1ab_0
- python=3.9.15=h47a2c10_0_cpython
- python-dateutil=2.8.2=pyhd8ed1ab_0
- python-fastjsonschema=2.16.3=pyhd8ed1ab_0
- python-irodsclient=1.1.6=pyhd8ed1ab_0
- python-tzdata=2023.3=pyhd8ed1ab_0
- python_abi=3.9=3_cp39
- pytz=2023.3=pyhd8ed1ab_0
- pyu2f=0.1.5=pyhd8ed1ab_0
- pyvcf=0.6.8=py39hde42818_1002
- pyyaml=6.0=py39hb9d737c_5
- r-base=4.2.2=h6b4767f_2
- r-cli=3.6.1=r42h38f115c_0
- r-colorspace=2.1_0=r42h133d619_0
- r-crayon=1.5.2=r42hc72bb7e_1
- r-ellipsis=0.3.2=r42h06615bd_1
- r-fansi=1.0.4=r42h133d619_0
- r-farver=2.1.1=r42h7525677_1
- r-ggplot2=3.4.2=r42hc72bb7e_0
- r-glue=1.6.2=r42h06615bd_1
- r-gtable=0.3.3=r42hc72bb7e_0
- r-isoband=0.2.7=r42h38f115c_1
- r-labeling=0.4.2=r42hc72bb7e_2
- r-lattice=0.21_8=r42h133d619_0
- r-lifecycle=1.0.3=r42hc72bb7e_1
- r-magrittr=2.0.3=r42h06615bd_1
- r-mass=7.3_58.3=r42h133d619_0
- r-matrix=1.5_4=r42he1ae0d6_0
- r-mgcv=1.8_42=r42he1ae0d6_0
- r-munsell=0.5.0=r42hc72bb7e_1005
- r-nlme=3.1_162=r42hac0b197_0
- r-pillar=1.9.0=r42hc72bb7e_0
- r-pkgconfig=2.0.3=r42hc72bb7e_2
- r-plyr=1.8.8=r42h7525677_0
- r-r6=2.5.1=r42hc72bb7e_1
- r-rcolorbrewer=1.1_3=r42h785f33e_1
- r-rcpp=1.0.10=r42h38f115c_0
- r-rlang=1.1.0=r42h38f115c_0
- r-scales=1.2.1=r42hc72bb7e_1
- r-tibble=3.2.1=r42h133d619_1
- r-utf8=1.2.3=r42h133d619_0
- r-vctrs=0.6.2=r42ha503ecb_0
- r-viridislite=0.4.1=r42hc72bb7e_1
- r-withr=2.5.0=r42hc72bb7e_1
- re2=2022.06.01=h27087fc_1
- readline=8.2=h8228510_1
- reproc=14.2.4=h0b41bf4_0
- reproc-cpp=14.2.4=hcb278e6_0
- requests=2.28.2=pyhd8ed1ab_1
- reretry=0.11.8=pyhd8ed1ab_0
- rich=13.3.4=pyhd8ed1ab_0
- rsa=4.9=pyhd8ed1ab_0
- ruamel.yaml=0.17.21=py39h72bdee0_3
- ruamel.yaml.clib=0.2.7=py39h72bdee0_1
- s3transfer=0.6.0=pyhd8ed1ab_0
- samtools=1.17=h00cdaf9_0
- scipy=1.10.1=py39he83f1e1_0
- sed=4.8=he412f7d_0
- setuptools=67.6.1=pyhd8ed1ab_0
- six=1.16.0=pyh6c4a22f_0
- slacker=0.14.0=py_0
- smart_open=6.3.0=pyhd8ed1ab_1
- smmap=3.0.5=pyh44b312d_0
- snakemake=7.25.0=hdfd78af_1
- snakemake-minimal=7.25.0=pyhdfd78af_1
- sniffles=2.0.7=pyhdfd78af_0
- stone=3.3.1=pyhd8ed1ab_0
- stopit=1.1.2=py_0
- svim=1.4.2=py_0
- sysroot_linux-64=2.12=he073ed8_15
- tabulate=0.9.0=pyhd8ed1ab_1
- throttler=1.2.1=pyhd8ed1ab_0
- tk=8.6.12=h27826a3_0
- tktable=2.10=hb7b940f_3
- tomli=2.0.1=pyhd8ed1ab_0
- toolz=0.12.0=pyhd8ed1ab_0
- toposort=1.10=pyhd8ed1ab_0
- tqdm=4.65.0=pyhd8ed1ab_1
- traitlets=5.9.0=pyhd8ed1ab_0
- typing-extensions=4.5.0=hd8ed1ab_0
- typing_extensions=4.5.0=pyha770c72_0
- tzdata=2023c=h71feb2d_0
- ubiquerg=0.6.2=pyhd8ed1ab_0
- unicodedata2=15.0.0=py39hb9d737c_0
- uritemplate=4.1.1=pyhd8ed1ab_0
- urllib3=1.26.15=pyhd8ed1ab_0
- veracitools=0.1.3=py_0
- vg=1.40.0=h9ee0642_0
- wcwidth=0.2.6=pyhd8ed1ab_0
- wheel=0.40.0=pyhd8ed1ab_0
- wrapt=1.15.0=py39h72bdee0_0
- xorg-fixesproto=5.0=h7f98852_1002
- xorg-inputproto=2.3.2=h7f98852_1002
- xorg-kbproto=1.0.7=h7f98852_1002
- xorg-libice=1.0.10=h7f98852_0
- xorg-libsm=1.2.3=hd9c2040_1000
- xorg-libx11=1.8.4=h0b41bf4_0
- xorg-libxau=1.0.9=h7f98852_0
- xorg-libxdmcp=1.1.3=h7f98852_0
- xorg-libxext=1.3.4=h0b41bf4_2
- xorg-libxfixes=5.0.3=h7f98852_1004
- xorg-libxi=1.7.10=h7f98852_0
- xorg-libxrender=0.9.10=h7f98852_1003
- xorg-libxt=1.2.1=h7f98852_2
- xorg-libxtst=1.2.3=h7f98852_1002
- xorg-recordproto=1.14.2=h7f98852_1002
- xorg-renderproto=0.11.1=h7f98852_1002
- xorg-xextproto=7.3.0=h0b41bf4_1003
- xorg-xproto=7.0.31=h7f98852_1007
- xz=5.2.6=h166bdaf_0
- yaml=0.2.5=h7f98852_2
- yaml-cpp=0.7.0=h27087fc_2
- yarl=1.8.2=py39hb9d737c_0
- yte=1.5.1=py39hf3d152e_1
- zipp=3.15.0=pyhd8ed1ab_0
- zlib=1.2.13=h166bdaf_4
- zstandard=0.19.0=py39h29414ee_1
- zstd=1.5.2=h3eb15da_6