diff --git a/README.rst b/README.rst index c25b5391..187f4814 100644 --- a/README.rst +++ b/README.rst @@ -1,9 +1,11 @@ starfish: scalable pipelines for image-based transcriptomics -======== +============================================================ - -.. image:: docs/source/_static/design/logo.png - :scale: 50 % +.. image:: https://github.com/spacetx/starfish/blob/64add94b51dbf6f8f5fd614b02c4dfbf4b0d702d/docs/source/_static/design/logo.png?raw=True + :alt: starfish logo + :width: 312 + :height: 127 + :align: center ----------------------------- @@ -23,15 +25,17 @@ starfish: scalable pipelines for image-based transcriptomics :target: https://spacetx-starfish.readthedocs.io/en/latest/?badge=latest :alt: Documentation Status -.. image:: https://travis-ci.com/spacetx/starfish.svg?branch=master - :target: https://travis-ci.com/spacetx/starfish +.. image:: https://github.com/spacetx/starfish/actions/workflows/starfish-prod-ci.yml/badge.svg?branch=master + :target: https://github.com/spacetx/starfish/actions/workflows/starfish-prod-ci.yml + :alt: starfish production CI .. image:: https://codecov.io/gh/spacetx/starfish/branch/master/graph/badge.svg :target: https://codecov.io/gh/spacetx/starfish + :alt: Code Coverage ------------------------------- -*starfish* is a Python library for processing images of image-based spatial transcriptomics. +**starfish** is a Python library for processing images of image-based spatial transcriptomics. It lets you build scalable pipelines that localize and quantify RNA transcripts in image data generated by any FISH method, from simple RNA single-molecule FISH to combinatorial barcoded assays. @@ -70,7 +74,7 @@ We welcome contributions from our users! See our contributing.rst_ and `develope .. _contributing.rst: https://github.com/spacetx/starfish/blob/master/CONTRIBUTING.rst Help, support, and questions ----------------- +---------------------------- - Forum: ask on the `Image.sc forum `_ - Email: `starfish@chanzuckerberg.com `_