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maybe add new command, sourmash prefetch
#1310
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As supporting datapoint, yesterday I worked a bit on bringing the counter gather from greyhound into Python, and there is a bit of the functionality that is shared with I think it's small enough to be available in |
idle early morning thought - double check that the prefetch approach works for |
also struck by the basic similarity between the behavior of |
I'm a big fan of the
prefetch_gather
functionality in genome-grist that pulls out overlapping signatures from a large database for the purpose of doing downstream gather and other things, and it seems like #1238 is going to be adding the related functionality from greyhound #1226 into sourmash. However, I am wondering if there's value in explicitly adding a Python-based sourmash CLI function,sourmash prefetch
, that would let us explore the behavior in non-Rust code. It seems like it would be generically useful to have it be available, and it would also prevent us from copy-pastingprefetch_gather
over to other projects like charcoal and maybe thumper...The text was updated successfully, but these errors were encountered: