From 0f18be7618a8dfb998455edf1da89b7cfb2e1301 Mon Sep 17 00:00:00 2001
From: David Laehnemann <david.laehnemann@hhu.de>
Date: Mon, 25 Mar 2024 17:30:35 +0100
Subject: [PATCH] fix: update to using storage plugin ftp (#76)

* fix: update to using storage plugin ftp

* fix: require a recent snakemake above version 8.0

* chore: remove unnecessary FTP import
---
 workflow/Snakefile        | 2 +-
 workflow/rules/common.smk | 3 ---
 2 files changed, 1 insertion(+), 4 deletions(-)

diff --git a/workflow/Snakefile b/workflow/Snakefile
index c0605f1..c90b232 100644
--- a/workflow/Snakefile
+++ b/workflow/Snakefile
@@ -1,7 +1,7 @@
 from snakemake.utils import min_version
 
 ##### set minimum snakemake version #####
-min_version("6.4.1")
+min_version("8.8.0")
 
 
 ##### setup report #####
diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk
index 1817063..c89d6fa 100644
--- a/workflow/rules/common.smk
+++ b/workflow/rules/common.smk
@@ -1,11 +1,8 @@
 import glob
 
 import pandas as pd
-from snakemake.remote import FTP
 from snakemake.utils import validate
 
-ftp = FTP.RemoteProvider()
-
 validate(config, schema="../schemas/config.schema.yaml")
 
 samples = (