DB shuts down for no reason when using docker-compose

[farzinghanbari]

I have tried to use docker-compose to install skylines and the problem is I see the following error when I'm trying to get flights page:

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Apparently this is somehow related to db and this is the output I see on terminal:

api_1       | 172.18.0.1 - - [28/Oct/2021 07:34:16] "GET /flights HTTP/1.1" 200 -
db_1        | 2021-10-28 07:34:17.385 UTC [221] ERROR:  relation "flights" does not exist at character 46
db_1        | 2021-10-28 07:34:17.385 UTC [221] STATEMENT:  SELECT max(flights.date_local) AS date 
db_1        | 	FROM flights JOIN igc_files ON igc_files.id = flights.igc_file_id 
db_1        | 	WHERE flights.takeoff_time < '2021-10-28T07:34:17.289766'::timestamp AND (flights.privacy_level = 0 OR NULL)
api_1       | 172.18.0.1 - - [28/Oct/2021 07:34:17] "GET /api/flights/latest?page=1&column=score&order=desc HTTP/1.1" 500 -
api_1       | Traceback (most recent call last):
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sentry_sdk/integrations/flask.py", line 90, in sentry_patched_wsgi_app
api_1       |     environ, start_response
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sentry_sdk/integrations/wsgi.py", line 131, in __call__
api_1       |     reraise(*_capture_exception(hub))
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sentry_sdk/integrations/wsgi.py", line 127, in __call__
api_1       |     _sentry_start_response, start_response, transaction
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sentry_sdk/integrations/flask.py", line 89, in <lambda>
api_1       |     return SentryWsgiMiddleware(lambda *a, **kw: old_app(self, *a, **kw))(
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/flask/app.py", line 2464, in __call__
api_1       |     return self.wsgi_app(environ, start_response)
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/werkzeug/middleware/dispatcher.py", line 66, in __call__
api_1       |     return app(environ, start_response)
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sentry_sdk/integrations/flask.py", line 90, in sentry_patched_wsgi_app
api_1       |     environ, start_response
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sentry_sdk/integrations/wsgi.py", line 101, in __call__
api_1       |     return self.app(environ, start_response)
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sentry_sdk/integrations/flask.py", line 89, in <lambda>
api_1       |     return SentryWsgiMiddleware(lambda *a, **kw: old_app(self, *a, **kw))(
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/flask/app.py", line 2464, in __call__
api_1       |     return self.wsgi_app(environ, start_response)
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/flask/app.py", line 2450, in wsgi_app
api_1       |     response = self.handle_exception(e)
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/flask/app.py", line 1867, in handle_exception
api_1       |     reraise(exc_type, exc_value, tb)
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/flask/app.py", line 2447, in wsgi_app
api_1       |     response = self.full_dispatch_request()
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/flask/app.py", line 1952, in full_dispatch_request
api_1       |     rv = self.handle_user_exception(e)
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/flask/app.py", line 1821, in handle_user_exception
api_1       |     reraise(exc_type, exc_value, tb)
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/flask/app.py", line 1950, in full_dispatch_request
api_1       |     rv = self.dispatch_request()
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/flask/app.py", line 1936, in dispatch_request
api_1       |     return self.view_functions[rule.endpoint](**req.view_args)
api_1       |   File "/home/skylines/code/skylines/api/oauth.py", line 98, in decorated
api_1       |     return f(*args, **kwargs)
api_1       |   File "/home/skylines/code/skylines/api/views/flights.py", line 222, in latest
api_1       |     date_ = query.one().date
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sqlalchemy/orm/query.py", line 3490, in one
api_1       |     ret = self.one_or_none()
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sqlalchemy/orm/query.py", line 3459, in one_or_none
api_1       |     ret = list(self)
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sqlalchemy/orm/query.py", line 3535, in __iter__
api_1       |     return self._execute_and_instances(context)
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sqlalchemy/orm/query.py", line 3560, in _execute_and_instances
api_1       |     result = conn.execute(querycontext.statement, self._params)
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sqlalchemy/engine/base.py", line 1011, in execute
api_1       |     return meth(self, multiparams, params)
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sqlalchemy/sql/elements.py", line 298, in _execute_on_connection
api_1       |     return connection._execute_clauseelement(self, multiparams, params)
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sqlalchemy/engine/base.py", line 1130, in _execute_clauseelement
api_1       |     distilled_params,
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sqlalchemy/engine/base.py", line 1317, in _execute_context
api_1       |     e, statement, parameters, cursor, context
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sqlalchemy/engine/base.py", line 1511, in _handle_dbapi_exception
api_1       |     sqlalchemy_exception, with_traceback=exc_info[2], from_=e
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sqlalchemy/engine/base.py", line 1277, in _execute_context
api_1       |     cursor, statement, parameters, context
api_1       |   File "/root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/sqlalchemy/engine/default.py", line 609, in do_execute
api_1       |     cursor.execute(statement, parameters)
api_1       | ProgrammingError: (psycopg2.errors.UndefinedTable) relation "flights" does not exist
api_1       | LINE 2: FROM flights JOIN igc_files ON igc_files.id = flights.igc_fi...
api_1       |              ^
api_1       | 
api_1       | [SQL: SELECT max(flights.date_local) AS date 
api_1       | FROM flights JOIN igc_files ON igc_files.id = flights.igc_file_id 
api_1       | WHERE flights.takeoff_time < %(takeoff_time_1)s AND (flights.privacy_level = %(privacy_level_1)s OR NULL)]
api_1       | [parameters: {'privacy_level_1': 0, 'takeoff_time_1': datetime.datetime(2021, 10, 28, 7, 34, 17, 289766)}]
api_1       | (Background on this error at: http://sqlalche.me/e/13/f405)

So I removed all the containers and volume and network and run docker-compose up command again, and this is the result I got:

db_1        | The files belonging to this database system will be owned by user "postgres".
db_1        | This user must also own the server process.
db_1        | 
redis_1     | 1:C 28 Oct 2021 07:32:47.491 # oO0OoO0OoO0Oo Redis is starting oO0OoO0OoO0Oo
redis_1     | 1:C 28 Oct 2021 07:32:47.491 # Redis version=6.2.6, bits=64, commit=00000000, modified=0, pid=1, just started
redis_1     | 1:C 28 Oct 2021 07:32:47.491 # Warning: no config file specified, using the default config. In order to specify a config file use redis-server /path/to/redis.conf
db_1        | The database cluster will be initialized with locale "en_US.utf8".
db_1        | The default database encoding has accordingly been set to "UTF8".
db_1        | The default text search configuration will be set to "english".
db_1        | 
db_1        | Data page checksums are disabled.
worker_1    | [2021-10-28 07:32:59,009] INFO in app: Running on git revision ce68ee28
redis_1     | 1:M 28 Oct 2021 07:32:47.492 * monotonic clock: POSIX clock_gettime
redis_1     | 1:M 28 Oct 2021 07:32:47.493 * Running mode=standalone, port=6379.
worker_1    | [2021-10-28 07:32:59,057] INFO in app: Running on git revision ce68ee28
db_1        | 
db_1        | fixing permissions on existing directory /var/lib/postgresql/data ... ok
redis_1     | 1:M 28 Oct 2021 07:32:47.493 # Server initialized
redis_1     | 1:M 28 Oct 2021 07:32:47.493 # WARNING overcommit_memory is set to 0! Background save may fail under low memory condition. To fix this issue add 'vm.overcommit_memory = 1' to /etc/sysctl.conf and then reboot or run the command 'sysctl vm.overcommit_memory=1' for this to take effect.
redis_1     | 1:M 28 Oct 2021 07:32:47.493 * Ready to accept connections
db_1        | creating subdirectories ... ok
worker_1    | /root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/celery/platforms.py:812: RuntimeWarning: You are running the worker with superuser privileges, which is
worker_1    | absolutely not recommended!
worker_1    | 
worker_1    | Please specify a different user using the -u option.
worker_1    | 
worker_1    | User information: uid=0 euid=0 gid=0 egid=0
worker_1    | 
worker_1    |   uid=uid, euid=euid, gid=gid, egid=egid,
worker_1    | [2021-10-28 07:32:59,119: WARNING/MainProcess] /root/.local/share/virtualenvs/code-t3DK9Vtb/lib/python2.7/site-packages/celery/apps/worker.py:161: CDeprecationWarning: 
worker_1    | Starting from version 3.2 Celery will refuse to accept pickle by default.
worker_1    | 
worker_1    | The pickle serializer is a security concern as it may give attackers
worker_1    | the ability to execute any command.  It's important to secure
worker_1    | your broker from unauthorized access when using pickle, so we think
worker_1    | that enabling pickle should require a deliberate action and not be
worker_1    | the default choice.
worker_1    | 
worker_1    | If you depend on pickle then you should set a setting to disable this
worker_1    | warning and to be sure that everything will continue working
worker_1    | when you upgrade to Celery 3.2::
worker_1    | 
worker_1    |     CELERY_ACCEPT_CONTENT = ['pickle', 'json', 'msgpack', 'yaml']
worker_1    | 
worker_1    | You must only enable the serializers that you will actually use.
worker_1    | 
worker_1    | 
worker_1    |   warnings.warn(CDeprecationWarning(W_PICKLE_DEPRECATED))
worker_1    | [2021-10-28 07:32:59,583: INFO/MainProcess] Connected to redis://redis:6379/0
db_1        | selecting default max_connections ... 100
worker_1    | [2021-10-28 07:32:59,597: INFO/MainProcess] mingle: searching for neighbors
db_1        | selecting default shared_buffers ... 128MB
db_1        | selecting default timezone ... Etc/UTC
db_1        | selecting dynamic shared memory implementation ... posix
db_1        | creating configuration files ... ok
db_1        | running bootstrap script ... ok
db_1        | performing post-bootstrap initialization ... ok
db_1        | syncing data to disk ... ok
db_1        | 
db_1        | Success. You can now start the database server using:
db_1        | 
db_1        |     pg_ctl -D /var/lib/postgresql/data -l logfile start
db_1        | 
db_1        | 
db_1        | WARNING: enabling "trust" authentication for local connections
db_1        | You can change this by editing pg_hba.conf or using the option -A, or
db_1        | --auth-local and --auth-host, the next time you run initdb.
db_1        | waiting for server to start....2021-10-28 07:32:59.971 UTC [62] LOG:  listening on Unix socket "/var/run/postgresql/.s.PGSQL.5432"
db_1        | 2021-10-28 07:33:00.441 UTC [63] LOG:  database system was shut down at 2021-10-28 07:32:53 UTC
db_1        | 2021-10-28 07:33:00.501 UTC [62] LOG:  database system is ready to accept connections
db_1        |  done
db_1        | server started
worker_1    | [2021-10-28 07:33:00,604: INFO/MainProcess] mingle: all alone
worker_1    | [2021-10-28 07:33:00,617: WARNING/MainProcess] celery@cf4961e6b0f7 ready.
db_1        | 
db_1        | /usr/local/bin/docker-entrypoint.sh: running /docker-entrypoint-initdb.d/create-databases.sql
db_1        | CREATE DATABASE
db_1        | You are now connected to database "skylines" as user "postgres".
tracking_1  | [2021-10-28 07:33:01,826] INFO in app: Running on git revision ce68ee28
tracking_1  | Receiving datagrams on :5597
tracking_1  | [2021-10-28 07:33:01,866] INFO in app: Running on git revision ce68ee28
api_1       | [2021-10-28 07:33:01,997] INFO in app: Running on git revision ce68ee28
api_1       | [2021-10-28 07:33:02,028] INFO in app: Running on git revision ce68ee28
api_1       | [2021-10-28 07:33:02,064] INFO in app: Running on git revision ce68ee28
api_1       |  * Serving Flask app "skylines.frontend" (lazy loading)
api_1       |  * Environment: production
api_1       |    WARNING: This is a development server. Do not use it in a production deployment.
api_1       |    Use a production WSGI server instead.
api_1       |  * Debug mode: on
api_1       |  * Running on http://0.0.0.0:5000/ (Press CTRL+C to quit)
api_1       |  * Restarting with stat
db_1        | CREATE EXTENSION
api_1       | [2021-10-28 07:33:03,141] INFO in app: Running on git revision ce68ee28
db_1        | CREATE EXTENSION
api_1       | [2021-10-28 07:33:03,172] INFO in app: Running on git revision ce68ee28
api_1       | [2021-10-28 07:33:03,211] INFO in app: Running on git revision ce68ee28
api_1       |  * Debugger is active!
api_1       |  * Debugger PIN: 273-665-450
db_1        | CREATE DATABASE
db_1        | You are now connected to database "skylines_test" as user "postgres".
db_1        | CREATE EXTENSION
db_1        | CREATE EXTENSION
db_1        | 
db_1        | 
db_1        | 2021-10-28 07:33:06.592 UTC [62] LOG:  received fast shutdown request
db_1        | waiting for server to shut down....2021-10-28 07:33:06.682 UTC [62] LOG:  aborting any active transactions
db_1        | 2021-10-28 07:33:06.684 UTC [62] LOG:  worker process: logical replication launcher (PID 69) exited with exit code 1
db_1        | 2021-10-28 07:33:06.684 UTC [64] LOG:  shutting down
db_1        | .2021-10-28 07:33:07.628 UTC [62] LOG:  database system is shut down
db_1        |  done
db_1        | server stopped
db_1        | 
db_1        | PostgreSQL init process complete; ready for start up.
db_1        | 
db_1        | 2021-10-28 07:33:07.756 UTC [1] LOG:  listening on IPv4 address "0.0.0.0", port 5432
db_1        | 2021-10-28 07:33:07.756 UTC [1] LOG:  listening on IPv6 address "::", port 5432
db_1        | 2021-10-28 07:33:07.845 UTC [1] LOG:  listening on Unix socket "/var/run/postgresql/.s.PGSQL.5432"
db_1        | 2021-10-28 07:33:08.002 UTC [101] LOG:  database system was shut down at 2021-10-28 07:33:07 UTC
db_1        | 2021-10-28 07:33:08.094 UTC [1] LOG:  database system is ready to accept connections

What is interesting for me is the part about:

db_1        | 2021-10-28 07:33:06.592 UTC [62] LOG:  received fast shutdown request
db_1        | waiting for server to shut down....2021-10-28 07:33:06.682 UTC [62] LOG:  aborting any active transactions
db_1        | 2021-10-28 07:33:06.684 UTC [62] LOG:  worker process: logical replication launcher (PID 69) exited with exit code 1
db_1        | 2021-10-28 07:33:06.684 UTC [64] LOG:  shutting down
db_1        | .2021-10-28 07:33:07.628 UTC [62] LOG:  database system is shut down
db_1        |  done
db_1        | server stopped

Unfortunately, I have no idea how containers of this project are organized and I have no idea how to debug this problem. So I'd really appreciate any help.