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publications.html
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---
layout: default
title: Publications
---
<div class="blurb">
<h2>Research articles</h2>
<h3>In preparation</h3>
<p style="padding-left:30px;">
<strong>Jijon S</strong>, Vardavas R and Breban R. Epidemic reemergence induced by vaccine hesitancy.
</p>
<p style="padding-left:30px;">
<strong>Jijón S</strong> and Patouillard E. Mathematical modelling of the SARS-CoV-2 epidemic accounting for endogenous individual behaviors: A rapid narrative review and perspectives for low- and middle-income countries
</p>
<!-- <h3>Preprints / Submitted manuscripts</h3> -->
<h3>Published articles</h3>
<p style="padding-left:30px;">
<strong>Jijón S</strong>, Czuppon P, Blanquart F and Débarre F. (2024)
<br>
Using early detection data to estimate the date of emergence of an epidemic outbreak.
<br>
<em>PLOS Computational Biology</em> 20(3): e1011934.
<br>
doi: 10.1371/journal.pcbi.1011934
<br>
<span style= "color: #1f7099;"> | </span>
<a href="https://doi.org/10.1371/journal.pcbi.1011934" target="_blank">Publication</a>
<span style= "color: #1f7099;"> | </span>
<a href="https://www.medrxiv.org/content/10.1101/2023.01.09.23284284v2" target="_blank">Preprint</a>
<span style= "color: #1f7099;"> | </span>
<a href="https://zenodo.org/doi/10.5281/zenodo.10657737" target="_blank">Zenodo</a>
<span style= "color: #1f7099;"> | </span>
<a href="https://github.com/sjijon/estimate-emergence-from-data" target="_blank">GitHub</a>
<span style= "color: #1f7099;"> | </span>
</p>
<p style="padding-left:30px;">
Smith D, Chervet S, Pinettes T, Shirreff G, <strong>Jijón S</strong>, Oodally A, Jean J, Opatowski L, Kernéis S and Temime L. (2023).
<br>
How have mathematical models contributed to understanding the transmission and control of SARS-CoV-2 in healthcare settings? A systematic search and review.
<br>
<em>Journal of Hospital Infection</em> 141:312-141.
<br>
doi: 10.1016/j.jhin.2023.07.028
<br>
<span style= "color: #1f7099;"> | </span>
<a href="https://doi.org/10.1016/j.jhin.2023.07.028" target="_blank">Publication</a>
<span style= "color: #1f7099;"> | </span>
<a href="https://www.medrxiv.org/content/10.1101/2023.03.17.23287403v2" target="_blank">Preprint</a>
<span style= "color: #1f7099;"> | </span>
</p>
<p style="padding-left:30px;">
Smith DRM, <strong>Jijón S</strong><sup>*</sup>, Oodally A<sup>*</sup>, Shirreff G<sup>*</sup>, Aït Bouziad K, Ante Testard P, Bastard J, Bouziri H, Salama Daouda O, Duchemin T, Godon-Rensonnet AS, Henriot P, Houri Y, Neynaud H, Perozziello A, Thonon F, Crépey P, Dab W, Jean K and Temime L. (2022).
<br>
Sick leave due to COVID-19 during the first pandemic wave in France, 2020.
<br>
<em>Occupational and Environmental Medicine</em> 80:268-272.
<br>
doi: 10.1136/oemed-2022-108451
<br>
<span style= "color: #1f7099;"> | </span>
<a href="https://doi.org/10.1136/oemed-2022-108451" target="_blank">Publication</a>
<span style= "color: #1f7099;"> | </span>
<a href="" target="_blank">Preprint</a>
<span style= "color: #1f7099;"> | </span>
<a href="https://github.com/MESuRS-Lab/Covid-sick-leave" target="_blank">Code</a>
<span style= "color: #1f7099;"> | </span>
</p>
<p style="padding-left:30px;">
<strong>Jijón S</strong>, Al Shafie A, Hassan E, EMAE-MESuRS working group on nosocomial SARS-CoV-2 modeling, Temime L, Jean K and El Kassas M (2022).
<br>
Estimating the risk of incident SARS-CoV-2 infection among healthcare workers in quarantine hospitals: the Egyptian example.
<br>
<em>Scientific Reports</em>, 12:19773.
<br>
doi: 10.1038/s41598-022-23428-x.
<br>
<span style= "color: #1f7099;"> | </span>
<a href="https://doi.org/10.1038/s41598-022-23428-x" target="_blank">Publication</a>
<!-- <a href="https://doi.org/10.1101/2020.12.21.20248594" target="_blank">Medrxiv</a> | -->
<span style= "color: #1f7099;"> | </span>
<a href="https://www.researchsquare.com/article/rs-1893865/v1 target="_blank">Preprint</a>
<span style= "color: #1f7099;"> | </span>
<a href="https://github.com/sjijon/SARS-CoV-2_QuarantineHospitals" target="_blank">Code</a>
<span style= "color: #1f7099;"> | </span>
</p>
<p style="padding-left:30px;">
<strong>Jijón S</strong>, Molina J-M, Costagliola D, Supervie V and Breban R (2021).
<br>
Can HIV epidemics among MSM in high-income countries be eliminated through voluntary participation to PrEP rollouts?.
<br>
<em>AIDS</em>, 35(14):2347–2354.
<br>
doi: 10.1097/QAD.0000000000003012.
<br>
<span style= "color: #1f7099;"> | </span>
<a href="https://doi.org/10.1097/QAD.0000000000003012" target="_blank">Publication</a>
<span style= "color: #1f7099;"> | </span>
<a href="https://hal.archives-ouvertes.fr/hal-03287483" target="_blank">HAL</a>
<span style= "color: #1f7099;"> | </span>
</p>
<p style="padding-left:30px;">
<strong>Jijón S</strong>, Supervie V and Breban R (2017).
<br>
Prevention of treatable infectious diseases: A game-theoretic approach.
<br>
<em>Vaccine</em>, 35(40):5339–5345.
<br>
doi: 10.1016/j.vaccine.2017.08.040.
<br>
<span style= "color: #1f7099;"> | </span>
<a href="https://doi.org/10.1016/j.vaccine.2017.08.040" target="_blank">Publication</a>
<span style= "color: #1f7099;"> | </span>
<a href="https://hal.archives-ouvertes.fr/pasteur-01634523" target="_blank">HAL</a>
<span style= "color: #1f7099;"> | </span>
</p>
<p style="padding-left:30px;">
<strong>Jijón S</strong> and Merino P (2013).
<br>
Reducción de un modelo de dispersión poblacional utilizando el método POD.
<br>
<em>Revista Politécnica</em>, 32(3):1–10.
<br>
<span style= "color: #1f7099;"> | </span>
<a href="https://revistapolitecnica.epn.edu.ec/ojs2/index.php/revista_politecnica2/article/view/66" target="_blank">Publication</a>
<span style= "color: #1f7099;"> | </span>
</p>
<h3>Dissertations</h3>
<p style="padding-left:30px;">
<strong>2021</strong> Prevention of infectious diseases in the context of efficient treatment: a game-theoretic approach.
<br>
PhD thesis, Sorbonne Université.
<br>
<span style= "color: #1f7099;"> | </span>
<a href="https://theses.fr/s267442" target="_blank">Manuscript</a>
<span style= "color: #1f7099;"> | </span>
<a href="https://github.com/sjijon/sjijon.github.io/raw/master/documents/DiaposSoutenanceThese_Handout.pdf" target="_blank">Defense slides</a>
<span style= "color: #1f7099;"> | </span>
</p>
<p style="padding-left:30px;">
<strong>2015</strong> Modeling the impact of pre-exposure prophylaxis in HIV incidence among men who have sex with men.
<br>
Master's dissertation, UPMC.
<br>
<em>(Unpublished)</em>
</p>
<p style="padding-left:30px;">
<strong>2013</strong> Reducción de un modelo de dispersión poblacional utilizando el método P.O.D.
<br>
Undergraduate dissertation, EPN.
<br>
<span style= "color: #1f7099;"> | </span>
<a href="http://bibdigital.epn.edu.ec/handle/15000/5625?locale=en" target="_blank">Manuscript</a>
<span style= "color: #1f7099;"> | </span>
</p>
</br>
<p style="font-size:10px;text-align:center;">
Updated: March, 2024.
</p>
</div><!-- /.blurb -->