From 34b52d701e8b6ffdf5605c51fe51999922ba872e Mon Sep 17 00:00:00 2001
From: huangyh09 <huangyh094@gmail.com>
Date: Sat, 5 Oct 2019 10:52:45 +0100
Subject: [PATCH] v0.1.6: fix a bug for smaller set of GT

---
 vireoSNP/version.py | 2 +-
 vireoSNP/vireo.py   | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/vireoSNP/version.py b/vireoSNP/version.py
index de49d1f..32efefd 100644
--- a/vireoSNP/version.py
+++ b/vireoSNP/version.py
@@ -1 +1 @@
-__version__ = "0.1.5"
\ No newline at end of file
+__version__ = "0.1.6"
\ No newline at end of file
diff --git a/vireoSNP/vireo.py b/vireoSNP/vireo.py
index ce2cfdd..8a58feb 100644
--- a/vireoSNP/vireo.py
+++ b/vireoSNP/vireo.py
@@ -143,7 +143,7 @@ def main():
             options.geno_tag)
         
         mm_idx = match(cell_vcf['variants'], donor_vcf['variants'])
-        idx1 = np.where(mm_idx != None)[0]
+        idx1 = np.where(mm_idx == mm_idx)[0] #remove None
         idx2 = mm_idx[idx1].astype(int)
 
         donor_GPb = donor_GPb[idx2, :, :]