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…ptions (#1690) (#1696) * Consolidation and vacuuming are now platform configuration options Commit and fragment_metadata consolidation and vacuuming can improve the opening and query performance of SOMA experiments. Vacuuming requires slight coordination though and should not happen by default. Instead a platform config allows the user to control these operations based. This will be expanded to defaults for top-level `io` packages where its more likely a user is doing a one-shot ingestion and will want automatic handling. A new platform config, `consolidate_and_vacuum` has been added which is a boolean to handle this behavior. * set is_mac for ci-minimal workflow Co-authored-by: Seth Shelnutt <[email protected]>
Co-authored-by: John Kerl <[email protected]>
…1698) (#1699) Co-authored-by: John Kerl <[email protected]>
* logger->set_pattern call should be unconditional, not windows-only * Remove EXCLUDE_FROM_ALL annotation on unit_soma, so that the target updates reliably * Add note about failure mode on a fork Co-authored-by: Isaiah Norton <[email protected]>
…1709) * [r] Support `factor` and `ordered` in `SOMADataFrameCreate` * Rework test to not require `nanoarrow` * Remove no-longer-need install of tiledb-r from r-universe [ci skip] * Rename test file * Small refactor in new test file * Add explicit tibble import for as_tibble (but not a new dependency) Co-authored-by: Dirk Eddelbuettel <[email protected]>
Co-authored-by: Vivian Nguyen <[email protected]>
… (#1724) Co-authored-by: Dirk Eddelbuettel <[email protected]>
The newer version lets us clean up some existing dependency complications -- especially an incompatibility with newer versions of numpy, which was getting more problematic as time went on. Co-authored-by: Mike Lin <[email protected]>
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GH really wants us to PR every open branch.
This is a keep-open release branch, not a PR branch.
This PR keeps GH quiet.