You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
The obsm, obsp, varm, and varp must be 2D arrays, not dataframes. In those cases when an input AnnData object does contain a dataframe in any of these slots, the ingest fails (as it should) but it fails partway through the ingest, and it fails with a stack trace.
We should have a type-check early on in from_anndata (next to the other existing error checks) -- before the ingest starts -- not within the ingest-matrix function at which point the experiment-level ingest would crash partway through
The error message should be user-friendly
The text was updated successfully, but these errors were encountered:
The
obsm
,obsp
,varm
, andvarp
must be 2D arrays, not dataframes. In those cases when an input AnnData object does contain a dataframe in any of these slots, the ingest fails (as it should) but it fails partway through the ingest, and it fails with a stack trace.from_anndata
(next to the other existing error checks) -- before the ingest starts -- not within the ingest-matrix function at which point the experiment-level ingest would crash partway throughThe text was updated successfully, but these errors were encountered: