From 74a1b071049972ab2b93571c93b5e7cec6cea0b1 Mon Sep 17 00:00:00 2001
From: Paul Hoffman <mojaveazure@users.noreply.github.com>
Date: Fri, 8 Nov 2024 12:02:44 -0500
Subject: [PATCH] [r/ci] Remove tiledb-r specific install Remove specific
 installation steps for tiledb-r as the doublepin was removed in #3006

resolves #3314

[SC-59087](https://app.shortcut.com/tiledb-inc/story/59087)
---
 .github/workflows/pkgdown.yaml                 | 17 -----------------
 .github/workflows/r-ci.yml                     | 17 -----------------
 .github/workflows/r-python-interop-testing.yml | 13 -------------
 .github/workflows/r-valgrind.yaml              | 12 ------------
 4 files changed, 59 deletions(-)

diff --git a/.github/workflows/pkgdown.yaml b/.github/workflows/pkgdown.yaml
index bf045172b4..c9dfd1c6d5 100644
--- a/.github/workflows/pkgdown.yaml
+++ b/.github/workflows/pkgdown.yaml
@@ -31,23 +31,6 @@ jobs:
         with:
           use-public-rspm: true
 
-      - name: Set additional repositories (macOS)
-        if: ${{ matrix.os != 'ubuntu-latest' }}
-        run: echo 'options(repos = c("https://tiledb-inc.r-universe.dev", getOption("repos")), timeout = 300L)' | tee -a ~/.Rprofile
-
-      - name: Set additional repositories (Linux)
-        if: ${{ matrix.os == 'ubuntu-latest' }}
-        run: |
-          rversion <- paste(strsplit(as.character(getRversion()), split = '\\.')[[1L]][1:2], collapse = '.')
-          codename <-  system('. /etc/os-release; echo ${VERSION_CODENAME}', intern = TRUE)
-          repo <- "https://tiledb-inc.r-universe.dev"
-          (opt <- sprintf('options(repos = c("%s/bin/linux/%s/%s", "%s", getOption("repos")), timeout = 300L)', repo, codename, rversion, repo))
-          cat(opt, "\n", file = "~/.Rprofile", append = TRUE)
-        shell: Rscript {0}
-
-      - name: Install tiledb-r
-        run: cd apis/r && Rscript tools/install-tiledb-r.R
-
       # Run this daily to surface errors as tracked at
       # https://github.com/single-cell-data/TileDB-SOMA/issues/2052
       - name: Install dependencies
diff --git a/.github/workflows/r-ci.yml b/.github/workflows/r-ci.yml
index 7c75fa2507..1d9c3e7e33 100644
--- a/.github/workflows/r-ci.yml
+++ b/.github/workflows/r-ci.yml
@@ -60,23 +60,6 @@ jobs:
       - name: Bootstrap
         run: cd apis/r && tools/r-ci.sh bootstrap
 
-      - name: Set additional repositories (macOS)
-        if: ${{ matrix.os != 'ubuntu-latest' }}
-        run: echo 'options(repos = c("https://tiledb-inc.r-universe.dev", getOption("repos")), timeout = 300L)' | tee -a ~/.Rprofile
-
-      - name: Set additional repositories (Linux)
-        if: ${{ matrix.os == 'ubuntu-latest' }}
-        run: |
-          rversion <- paste(strsplit(as.character(getRversion()), split = '\\.')[[1L]][1:2], collapse = '.')
-          codename <-  system('. /etc/os-release; echo ${VERSION_CODENAME}', intern = TRUE)
-          repo <- "https://tiledb-inc.r-universe.dev"
-          (opt <- sprintf('options(repos = c("%s/bin/linux/%s/%s", "%s", getOption("repos")), timeout = 300L)', repo, codename, rversion, repo))
-          cat(opt, "\n", file = "~/.Rprofile", append = TRUE)
-        shell: Rscript {0}
-
-      - name: Install tiledb-r
-        run: cd apis/r && Rscript tools/install-tiledb-r.R
-
       - name: Install BioConductor package SingleCellExperiment
         run: cd apis/r && tools/r-ci.sh install_bioc SingleCellExperiment
 
diff --git a/.github/workflows/r-python-interop-testing.yml b/.github/workflows/r-python-interop-testing.yml
index 079ee15331..0ae38b5c57 100644
--- a/.github/workflows/r-python-interop-testing.yml
+++ b/.github/workflows/r-python-interop-testing.yml
@@ -32,19 +32,6 @@ jobs:
       - name: Bootstrap
         run: cd apis/r && tools/r-ci.sh bootstrap
 
-      - name: Set additional repositories (Linux)
-        if: ${{ matrix.os == 'ubuntu-latest' }}
-        run: |
-          rversion <- paste(strsplit(as.character(getRversion()), split = '\\.')[[1L]][1:2], collapse = '.')
-          codename <-  system('. /etc/os-release; echo ${VERSION_CODENAME}', intern = TRUE)
-          repo <- "https://tiledb-inc.r-universe.dev"
-          (opt <- sprintf('options(repos = c("%s/bin/linux/%s/%s", "%s", getOption("repos")))', repo, codename, rversion, repo))
-          cat(opt, "\n", file = "~/.Rprofile", append = TRUE)
-        shell: Rscript {0}
-
-      - name: Install tiledb-r
-        run: cd apis/r && Rscript tools/install-tiledb-r.R
-
       - name: Dependencies
         run: cd apis/r && Rscript -e "remotes::install_deps(dependencies = TRUE, upgrade = FALSE)"
 
diff --git a/.github/workflows/r-valgrind.yaml b/.github/workflows/r-valgrind.yaml
index 6a84c0d235..83647109a6 100644
--- a/.github/workflows/r-valgrind.yaml
+++ b/.github/workflows/r-valgrind.yaml
@@ -25,18 +25,6 @@ jobs:
       - name: System Dependencies
         run: apt update -qq && apt upgrade --yes && apt install --yes --no-install-recommends valgrind cmake git
 
-      - name: Set additional repositories (Linux)
-        run: |
-          rversion <- paste(strsplit(as.character(getRversion()), split = '\\.')[[1L]][1:2], collapse = '.')
-          codename <-  system('. /etc/os-release; echo ${VERSION_CODENAME}', intern = TRUE)
-          repo <- "https://tiledb-inc.r-universe.dev"
-          (opt <- sprintf('options(repos = c("%s/bin/linux/%s/%s", "%s", getOption("repos")), timeout = 300L)', repo, codename, rversion, repo))
-          cat(opt, "\n", file = "~/.Rprofile", append = TRUE)
-        shell: Rscript {0}
-
-      - name: Install tiledb-r
-        run: cd apis/r && Rscript tools/install-tiledb-r.R
-
       - name: Package Dependencies
         run: cd apis/r && R -q -e 'remotes::install_deps(".", dependencies=TRUE, upgrade=FALSE)'