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ExperimentAxisQuery._read() and ExperimentAxisQuery.to_anndata() should read and export, respectively, obsm varm obsp and varp. #177

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pablo-gar opened this issue Oct 9, 2023 · 1 comment
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ExperimentAxisQuery._read() and ExperimentAxisQuery.to_anndata() should read and export, respectively, obsm varm obsp and varp. #177

pablo-gar opened this issue Oct 9, 2023 · 1 comment
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pablo-gar commented Oct 9, 2023 •
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Currently if a SOMA Experiment has arrays in obsm varm obsp and varp they are not read by ExperimentAxisQuery._read() and thus not exported by ExperimentAxisQuery.to_anndata().

These arrays should be able to be exported to an AnnData via ExperimentAxisQuery.to_anndata().

This ticket doesn't cover the inclusion of the methods .obsm() obsp() varm and varp()
@johnkerl johnkerl assigned johnkerl and unassigned johnkerl Oct 23, 2023
@pablo-gar pablo-gar assigned johnkerl and unassigned bkmartinjr Oct 30, 2023
@johnkerl johnkerl mentioned this issue Nov 2, 2023
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@johnkerl johnkerl assigned ebezzi and unassigned johnkerl Nov 2, 2023
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johnkerl commented Nov 21, 2023 •
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@ebezzi does this include both #178 and #179?

@johnkerl johnkerl mentioned this issue Nov 21, 2023
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@ebezzi ebezzi closed this as completed Jan 2, 2024
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@johnkerl @bkmartinjr @ebezzi @pablo-gar