Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Difficulty to compile TERefiner on mac OS #15

Open
jorisbertrand opened this issue Aug 19, 2019 · 0 comments
Open

Difficulty to compile TERefiner on mac OS #15

jorisbertrand opened this issue Aug 19, 2019 · 0 comments

Comments

@jorisbertrand
Copy link

Hi,
when running REPdenovo, the program stops with the following error:
Running command: ./TERefiner_1 -P -b ./test/contigs.fa.itself.sort.bam -r ./test/contigs.fa -o ./test/contigs.fa_no_dup.fa -c 0.9 -g ...
/bin/sh: ./TERefiner_1: cannot execute binary file

when trying to compile the TERefiner_1 tool, I got the following error message:

ld: library not found for -lcrt0.o
clang: error: linker command failed with exit code 1 (use -v to see invocation)
make: *** [TERefiner] Error 1

Not sure it is a directly related REPdenovo issue but are you still working on a user-friendly possibility to compile TERefiner_1 and ContigsMerger?

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
Development

No branches or pull requests

1 participant