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Hi, i am 9595 from india. i have a problem while compiling TERefiner_1 #12

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9495hi opened this issue Jun 6, 2018 · 2 comments
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@9495hi
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9495hi commented Jun 6, 2018

cd TERefiner && make && cd .. = after this command fatal error api/BamReader.h: No such file or directory compilation terminated is generating.

g++ -O3 -Wall -static -I../bamtools/build/src/api/include -I../bamtools/build/src/include -L -Wl,-rpath, -c bam_parse.cpp
In file included from bam_parse.cpp:1:0:
bam_parse.h:4:27: fatal error: api/BamReader.h: No such file or directory
compilation terminated.
Makefile:19: recipe for target 'bam_parse.o' failed
make: *** [bam_parse.o] Error 1

I even tried multiple links from bamtools repository and build folder to REPdenovo/bamtools-master, and the file is never found.
kindly, solve as i have to finish my project within 10 days.

@Milad021
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Milad021 commented Jun 8, 2018

I found a workaround for this compilation issue :
#11 (comment)

@9495hi
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9495hi commented Jun 9, 2018

Its not working in my case

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