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(1) Scripts for creating gap bed and STR/SimpleRepeat files were added.
(2) The codes for run_CNVnator.pl, run_inGAP.pl, run_single.pl, run_batch_slurm.pl, run_batch_LSF.pl, run_single_singularity.pl, run_batch_slurm_singularity.pl, and run_batch_LSF_singularity.pl were fixed to fit a wide range of non-human species.
(3) Singularity definition file was corrected to decrease the file size of created sif file.
(4) A direct download method for the Singularity sif file was provided.