Check My Sample Sheet

This is a streamlit application that uses Sequana (github.com/sequana/sequana) iem modules to check Sample Sheet from Illumina sequencers.

Running demo is here: https://check-my-sample-sheet.streamlit.app/

General Information

If you want to contribute to this web application, please provide PR here. Note, however, that the core of the application is within the Sequana project on https://github.com/sequana/sequana/, more specifically in the iem.py module.

The sanity checks implemented are based on experience and the bcl2fastq documentation v2.20

Local instance

git clone https://github.com/sequana/webapp_samplesheet check_my_sample_sheet
cd check_my_sample_sheet

# You will need to install requirements (sequana and streamlit)
pip install --file requirements.txt

# and should ne ready to test the appliction locally in your browser 
streamlit run app.py