pyproject.toml

[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"

[tool.poetry]
name = "sequana-rnaseq"
version = "0.20.0"
description = "A RNAseq pipeline from raw reads to feature counts"
authors = ["Sequana Team"]
license = "BSD-3"
repository = "https://github.com/sequana/rnaseq"
readme = "README.rst"
keywords = ["snakemake, sequana, RNAseq, RNADiff, differential analysis"]
classifiers = [
        "Development Status :: 5 - Production/Stable",
        "Intended Audience :: Education",
        "Intended Audience :: End Users/Desktop",
        "Intended Audience :: Developers",
        "Intended Audience :: Science/Research",
        "License :: OSI Approved :: BSD License",
        "Operating System :: POSIX :: Linux",
        "Programming Language :: Python :: 3.8",
        "Programming Language :: Python :: 3.9",
        "Programming Language :: Python :: 3.10",
        "Topic :: Software Development :: Libraries :: Python Modules",
        "Topic :: Scientific/Engineering :: Bio-Informatics",
        "Topic :: Scientific/Engineering :: Information Analysis",
]

packages = [
    {include = "sequana_pipelines"}
]


[tool.poetry.dependencies]
python = ">=3.8,<4.0"
sequana = ">=0.17.3"
sequana_pipetools = ">=1.0.2"
click-completion = "^0.5.2"
pulp = "<2.8.0"


[tool.poetry.scripts]
sequana_rnaseq = "sequana_pipelines.rnaseq.main:main"


[tool.poetry.group.dev.dependencies]
black = "^23.7.0"
pytest = "^7.4.0"
mock = "^5.1.0"
pytest-mock = "^3.11.1"
pytest-cov = "^4.1.0"