diff --git a/vignettes/manual.Rmd b/vignettes/manual.Rmd index 62a62bf..2fae7fa 100644 --- a/vignettes/manual.Rmd +++ b/vignettes/manual.Rmd @@ -279,6 +279,7 @@ gbm_df |> copy = 'gene' # see ?ggoncoplot for other valid values ) ``` + ## Customising the look Want more control over look of an oncoplot? ggoncoplot takes an `options` argument to help control all visual paramaters. See `?ggoncoplot_options` for a full list of paramaters. @@ -377,7 +378,7 @@ gbm_df |> ## Interaction with other packages -ggoncoplot outputs can be combined with other packages. Simply set interactive = FALSE so ggoncoplot returns a ggplot object instead of a ggiraph. Do the same for express. Then you can con +ggoncoplot outputs can be combined with other packages. Simply set interactive = FALSE so ggoncoplot returns a ggplot object instead of a ggiraph. Do the same for the express package which visualises TCGA methylation and expression t-SNE. Then you can use patchwork to compose the plots into a single visualisation make the entire group interactive with data linked across plots. ```{r} ## Create a Breast Cancer Oncoplot