From 10d52d5c5b5994df3406d3996262baef7b9dcae3 Mon Sep 17 00:00:00 2001 From: Severin Dicks <37635888+Intron7@users.noreply.github.com> Date: Tue, 14 May 2024 00:32:51 +0200 Subject: [PATCH] update for 0.10.4 (#194) * update for 0.10.4 * add 0.10.4 file --- README.md | 23 +---------------------- docs/release-notes/0.10.3.md | 1 - docs/release-notes/0.10.4.md | 15 +++++++++++++++ docs/release-notes/index.md | 2 ++ 4 files changed, 18 insertions(+), 23 deletions(-) create mode 100644 docs/release-notes/0.10.4.md diff --git a/README.md b/README.md index 90dbd349..49d7b822 100644 --- a/README.md +++ b/README.md @@ -16,30 +16,9 @@ Rapids-singlecell offers enhanced single-cell data analysis as a near drop-in re Our commitment with rapids-singlecell is to deliver a powerful, user-centric tool that significantly enhances single-cell data analysis capabilities in bioinformatics. -## Installation -### Conda -The easiest way to install *rapids-singlecell* is to use one of the *yaml* file provided in the [conda](https://github.com/scverse/rapids_singlecell/tree/main/conda) folder. These *yaml* files install everything needed to run the example notbooks and get you started. -``` -conda env create -f conda/rsc_rapids_24.02.yml -# or -mamba env create -f conda/rsc_rapids_24.04.yml -``` -### PyPI -``` -pip install rapids-singlecell -``` -The default installer doesn't cover RAPIDS nor cupy. Information on how to install RAPIDS & cupy can be found [here](https://rapids.ai/start.html). - -If you want to use RAPIDS PyPI packages, the whole library with all dependencies can be install with: -```` -pip install 'rapids-singlecell[rapids11]' --extra-index-url=https://pypi.nvidia.com #CUDA11.X -pip install 'rapids-singlecell[rapids12]' --extra-index-url=https://pypi.nvidia.com #CUDA12 -```` -It is important to ensure that the CUDA environment is set up correctly so that RAPIDS and Cupy can locate the necessary libraries. - ## Documentation -Please have a look through the [documentation](https://rapids-singlecell.readthedocs.io/en/latest/) +For more information please have a look through the [documentation](https://rapids-singlecell.readthedocs.io/en/latest/) ## Citation diff --git a/docs/release-notes/0.10.3.md b/docs/release-notes/0.10.3.md index 94cb57fd..a67cf160 100644 --- a/docs/release-notes/0.10.3.md +++ b/docs/release-notes/0.10.3.md @@ -15,7 +15,6 @@ * updates `gr.spatial_autocorr` to use a preallocation during the iterations {pr}`188` {smaller}`S Dicks` * `_get_mean_var` for dense input now uses `cupy.ReductionKernel` to improve precision and speed {pr}`190` {smaller}`S Dicks` -#190 ```{rubric} Bug fixes ``` * fixes a bug where the `pp.scale` would have issues with `int64` indexing {pr}`187` {smaller}`S Dicks` diff --git a/docs/release-notes/0.10.4.md b/docs/release-notes/0.10.4.md new file mode 100644 index 00000000..f885595a --- /dev/null +++ b/docs/release-notes/0.10.4.md @@ -0,0 +1,15 @@ +### 0.10.3 {small}`2024-05-14` + +```{rubric} Features +``` + +```{rubric} Performance +``` + +```{rubric} Bug fixes +``` +* fixes the creation of the docker container on release {pr}`193` {smaller}`T Korten (HZDR/Helmholtz AI)` + + +```{rubric} Misc +``` diff --git a/docs/release-notes/index.md b/docs/release-notes/index.md index 6e3488d1..c18b5dab 100644 --- a/docs/release-notes/index.md +++ b/docs/release-notes/index.md @@ -3,6 +3,8 @@ # Release notes ## Version 0.10.0 +```{include} /release-notes/0.10.4.md +``` ```{include} /release-notes/0.10.3.md ``` ```{include} /release-notes/0.10.2.md