diff --git a/main.nf b/main.nf index 09953f8..9423f6c 100644 --- a/main.nf +++ b/main.nf @@ -49,7 +49,7 @@ workflow.onComplete { Channel .fromFilePairs("$params.input/**/bundles/*.trk", size: -1) { it.parent.parent.name } - .into{bundles_for_rm_invalid; in_bundles_check; bundles_for_fixel_afd} + .into{bundles_for_rm_invalid; in_bundles_check} Channel .fromFilePairs("$params.input/**/metrics/*.nii.gz", @@ -137,7 +137,7 @@ process Remove_Invalid_Streamlines { set sid, file(bundles) from bundles_for_rm_invalid output: - set sid, "${sid}__*_ic.trk" into bundles_for_label_and_distance_map, bundles_for_centroids + set sid, "${sid}__*_ic.trk" into bundles_for_label_and_distance_map, bundles_for_centroids, bundles_for_fixel_afd script: String bundles_list = bundles.join(", ").replace(',', '')