diff --git a/tests/chained.nf.test b/tests/chained.nf.test index 44386af..9b0e2a5 100644 --- a/tests/chained.nf.test +++ b/tests/chained.nf.test @@ -5,29 +5,29 @@ nextflow_pipeline { name "Test nf-pediatric all profiles chained" script "../main.nf" -// ** COMMENTED OUT FOR NOW, UNTIL WE HAVE ACCESS TO THE SCIL'S RUNNERS. ** // -// test("Freesurfer + connectomics profiles - should run successfully") { +/* ** COMMENTED OUT FOR NOW, UNTIL WE HAVE ACCESS TO THE SCIL'S RUNNERS. ** // + test("Freesurfer + connectomics profiles - should run successfully") { -// when { -// params { - -// params.input = "$projectDir/tests/data/samplesheet_testconn.csv" -// params.outdir = "test_results/" + when { + params { -// params.connectomics = true -// params.freesurfer = true -// params.fs_license = "https://www.dropbox.com/scl/fi/0s8lp6lydyd0rxawxb4jm/license.txt?rlkey=hz54oc0d4sor69avqphtrjvgn&st=9e0yij97&dl=0" + params.input = "$projectDir/tests/data/samplesheet_testconn.csv" + params.outdir = "test_results/" -// } -// } + params.connectomics = true + params.freesurfer = true + params.fs_license = "https://www.dropbox.com/scl/fi/0s8lp6lydyd0rxawxb4jm/license.txt?rlkey=hz54oc0d4sor69avqphtrjvgn&st=9e0yij97&dl=0" -// then { -// assert workflow.success -// assert workflow.trace.tasks().size() == 9 -// } + } + } -// } + then { + assert workflow.success + assert workflow.trace.tasks().size() == 9 + } + } +*/ test("Connectomics + tracking profiles - should run successfully") { when { @@ -70,6 +70,7 @@ nextflow_pipeline { } +/* UNTIL WE HAVE SCIL'S RUNNERS, WE CAN'T RUN THIS TEST. ** // test("Connectomics + tracking + infant profiles - should run successfully") { when { @@ -101,5 +102,6 @@ nextflow_pipeline { } } +*/ }