From 06388c2ce4350332d2ab5d958d8f6b6ce0ac6dbc Mon Sep 17 00:00:00 2001 From: Anthony Gagnon Date: Mon, 25 Nov 2024 20:45:11 +0000 Subject: [PATCH] fix badges, typos, and add actions on main branch --- .github/workflows/ci.yml | 1 + .github/workflows/linting.yml | 1 + README.md | 5 +---- docs/output.md | 2 -- 4 files changed, 3 insertions(+), 6 deletions(-) diff --git a/.github/workflows/ci.yml b/.github/workflows/ci.yml index d1627a3..a070802 100644 --- a/.github/workflows/ci.yml +++ b/.github/workflows/ci.yml @@ -4,6 +4,7 @@ on: push: branches: - dev + - main pull_request: release: types: [published] diff --git a/.github/workflows/linting.yml b/.github/workflows/linting.yml index a502573..657ca2b 100644 --- a/.github/workflows/linting.yml +++ b/.github/workflows/linting.yml @@ -6,6 +6,7 @@ on: push: branches: - dev + - main pull_request: release: types: [published] diff --git a/README.md b/README.md index ae039a4..5cd5ac0 100644 --- a/README.md +++ b/README.md @@ -1,8 +1,5 @@ # nf-pediatric - -[![GitHub Actions CI Status](https://github.com/nf/pediatric/actions/workflows/ci.yml/badge.svg)](https://github.com/nf/pediatric/actions/workflows/ci.yml) -[![GitHub Actions Linting Status](https://github.com/nf/pediatric/actions/workflows/linting.yml/badge.svg)](https://github.com/nf/pediatric/actions/workflows/linting.yml)[![Cite with Zenodo](http://img.shields.io/badge/DOI-10.5281/zenodo.XXXXXXX-1073c8?labelColor=000000)](https://doi.org/10.5281/zenodo.XXXXXXX) -[![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com) +[![nf-pediatric CI](https://github.com/scilus/nf-pediatric/actions/workflows/ci.yml/badge.svg?branch=main)](https://github.com/scilus/nf-pediatric/actions/workflows/ci.yml)[![nf-core linting](https://github.com/scilus/nf-pediatric/actions/workflows/linting.yml/badge.svg?branch=main)](https://github.com/scilus/nf-pediatric/actions/workflows/linting.yml)[![nf-test](https://img.shields.io/badge/unit_tests-nf--test-337ab7.svg)](https://www.nf-test.com) [![Nextflow](https://img.shields.io/badge/nextflow%20DSL2-%E2%89%A524.04.2-23aa62.svg)](https://www.nextflow.io/) [![run with docker](https://img.shields.io/badge/run%20with-docker-0db7ed?labelColor=000000&logo=docker)](https://www.docker.com/) diff --git a/docs/output.md b/docs/output.md index ae13166..bfd1b43 100644 --- a/docs/output.md +++ b/docs/output.md @@ -97,8 +97,6 @@ The pipeline is built using [Nextflow](https://www.nextflow.io/) and data proces ### Segmentation -### Registration -
Output files