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DESCRIPTION
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DESCRIPTION
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Package: phylosmith
Title: Functions to help analyze data as phyloseq objects
Version: 1.0.7
Author: Schuyler Smith <[email protected]>
Maintainer: Schuyler Smith <[email protected]>
Description: Functions for analyzing phyloseq objects.
biocViews: Software, Sequencing, Microbiome,
Metagenomics, Clustering, Classification,
MultipleComparison, GeneticVariability, Visualization
URL: https://schuyler-smith.github.io/phylosmith/
BugReports: https://github.com/schuyler-smith/phylosmith.issues
Depends:
R (>= 3.5)
Imports:
data.table,
dendextend,
ggplot2,
ggraph,
ggrepel,
grDevices,
igraph,
parallel,
phyloseq,
RColorBrewer,
RcppParallel,
Rtsne,
sf,
stats,
stringr,
vegan,
viridis
LinkingTo:
Rcpp,
RcppArmadillo,
RcppParallel,
RcppProgress
Suggests:
BiocStyle,
devtools,
knitr,
rmarkdown,
testthat
NeedsCompilation: yes
VignetteBuilder: knitr
License: GPL-3
LazyData: true
RoxygenNote: 7.3.1.9000
Encoding: UTF-8